Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

25647534 .. 25656695

Gene Structure 9162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATCCCATAGGGAAAACAAGAGAAAAACATTCGTGTGATGATGTCTATAGAACCATAGGTTCTAAGACTACTCGGTCGAGGACTCGAGTCTTGAGTAATGGAACATTCACAGTTGAAAGAATTAATGGGTGTGTTGAGAAGGTGCTACTACCAAATTTTGGTGGCCATCGGAGGTGGTTGCCGGTGGCGCGTGGGGCCCACGCGCTGCCACTGTTGGTGGAGCTTGGAGGCGCAAGAAGGAGGGAAGTTTCATGGAATCGGGAACAACTACGATTCGGTCGCGGCAGCTTGGACCGACTTGACTCGGACCGAATCGGGGCTATGGCAGCTAATGAGGAAGCCTCCATTTGCTTTTATCGCAGCAATGACGGGGCTATGGGTCTATGGTGGTGGAGGAGAGGAATCTTAGATCTGGGTGGATTAAGATCAGTCAAATTGATCAACCCCGATCGGACACACATACCGGATTCTCTATTGGCGGCGACAAGCACGAAGTGTGCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.99

Weight (kDa)

10.38

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccII	CGCG	3 cut(s)	193, 206, 285
AciI	CCGC	2 cut(s)	285, 482
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	161, 319
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	3 cut(s)	226, 291, 332
AluI	AGCT	3 cut(s)	226, 291, 332
Alw21I	GWGCWC	1 cut(s)	505
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	166, 198
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	208, 288, 329, 363
ApoI	RAATTY	1 cut(s)	157
AseI	ATTAAT	1 cut(s)	126
AspLEI	GCGC	3 cut(s)	193, 208, 236
AspS9I	GGNCC	4 cut(s)	198, 199, 295, 310
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	295, 310
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	4 cut(s)	195, 300, 341, 375
BccI	CCATC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	49
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	6 cut(s)	209, 286, 289, 330, 364, 483
BlsI	GCNGC	6 cut(s)	210, 287, 290, 331, 365, 484
Bme18I	GGWCC	2 cut(s)	295, 310
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	4 cut(s)	198, 199, 295, 310
BmiI	GGNNCC	3 cut(s)	6, 199, 200
BoxI	GACNNNNGTC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpuEI	CTTGAG	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	427
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 319
Bse118I	RCCGGY	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	2 cut(s)	161, 319
BseMI	GCAATG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	4 cut(s)	195, 300, 341, 375
Bsh1236I	CGCG	3 cut(s)	193, 206, 285
Bsh1285I	CGRYCG	3 cut(s)	80, 283, 454
BshFI	GGCC	2 cut(s)	168, 200
BsiEI	CGRYCG	3 cut(s)	80, 283, 454
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	185, 467
BslI	CCNNNNNNNGG	2 cut(s)	161, 319
BsnI	GGCC	2 cut(s)	168, 200
BsoBI	CYCGRG	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	202, 505
Bsp143I	GATC	5 cut(s)	4, 412, 428, 441, 451
BspACI	CCGC	2 cut(s)	285, 482
BspANI	GGCC	2 cut(s)	168, 200
BspFNI	CGCG	3 cut(s)	193, 206, 285
BspLI	GGNNCC	3 cut(s)	6, 199, 200
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssMI	GATC	5 cut(s)	4, 412, 428, 441, 451
Bst4CI	ACNGT	2 cut(s)	115, 216
BstDEI	CTNAG	2 cut(s)	66, 409
BstFNI	CGCG	3 cut(s)	193, 206, 285
BstHHI	GCGC	3 cut(s)	193, 208, 236
BstKTI	GATC	5 cut(s)	7, 415, 431, 444, 454
BstMBI	GATC	5 cut(s)	4, 412, 428, 441, 451
BstMCI	CGRYCG	3 cut(s)	80, 283, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 197, 329, 360
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	3 cut(s)	193, 206, 285
BstV1I	GCAGC	4 cut(s)	195, 300, 341, 375
BstX2I	RGATCY	2 cut(s)	4, 412
BstYI	RGATCY	2 cut(s)	4, 412
BsuRI	GGCC	2 cut(s)	168, 200
BtsIMutI	CAGTG	1 cut(s)	212
CfoI	GCGC	3 cut(s)	193, 208, 236
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	198, 199, 295, 310
CpoI	CGGWCCG	1 cut(s)	310
CspI	CGGWCCG	1 cut(s)	310
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	8 cut(s)	168, 200, 226, 291, 323, 332, 344, 377
CviKI_1	RGCY	8 cut(s)	168, 200, 226, 291, 323, 332, 344, 377
DdeI	CTNAG	2 cut(s)	66, 409
DpnI	GATC	5 cut(s)	6, 414, 430, 443, 453
DpnII	GATC	5 cut(s)	4, 412, 428, 441, 451
DraIII	CACNNNGTG	1 cut(s)	498
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	295, 310
Eco88I	CYCGRG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	1 cut(s)	258
FaiI	YATR	8 cut(s)	11, 51, 59, 256, 326, 380, 388, 464
FatI	CATG	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	6 cut(s)	209, 286, 289, 330, 364, 483
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	6 cut(s)	209, 286, 289, 330, 364, 483
GlaI	GCGC	3 cut(s)	192, 207, 235
GluI	GCNGC	6 cut(s)	209, 286, 289, 330, 364, 483
HaeIII	GGCC	2 cut(s)	168, 200
HapII	CCGG	2 cut(s)	185, 467
HhaI	GCGC	3 cut(s)	193, 208, 236
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	3 cut(s)	191, 206, 234
HinP1I	GCGC	3 cut(s)	191, 206, 234
HinfI	GANTC	8 cut(s)	85, 90, 259, 276, 305, 315, 405, 470
HpaII	CCGG	2 cut(s)	185, 467
Hpy188I	TCNGA	3 cut(s)	174, 310, 456
Hpy188III	TCNNGA	2 cut(s)	94, 263
HpyAV	CCTTC	2 cut(s)	136, 234
HpyCH4III	ACNGT	2 cut(s)	115, 216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 197, 329, 360
HpyF3I	CTNAG	2 cut(s)	66, 409
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	3 cut(s)	191, 206, 234
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	4, 412, 428, 441, 451
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	3 cut(s)	198, 401, 480
Lsp1109I	GCAGC	4 cut(s)	195, 300, 341, 375
MalI	GATC	5 cut(s)	6, 414, 430, 443, 453
MboI	GATC	5 cut(s)	4, 412, 428, 441, 451
MflI	RGATCY	2 cut(s)	4, 412
MhlI	GDGCHC	2 cut(s)	202, 505
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	123, 157, 437
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	79, 99, 299
MnlI	CCTC	8 cut(s)	75, 168, 224, 237, 331, 355, 390, 395
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	2 cut(s)	126, 425
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	2 cut(s)	185, 467
MvnI	CGCG	3 cut(s)	193, 206, 285
MwoI	GCNNNNNNNGC	4 cut(s)	190, 197, 329, 360
NdeII	GATC	5 cut(s)	4, 412, 428, 441, 451
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	3 cut(s)	6, 199, 200
PaeR7I	CTCGAG	1 cut(s)	87
PfeI	GAWTC	5 cut(s)	259, 276, 315, 405, 470
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	210, 287, 290, 331, 365, 484
Ple19I	CGATCG	1 cut(s)	454
PleI	GAGTC	3 cut(s)	79, 98, 299
PpsI	GAGTC	3 cut(s)	79, 98, 299
PshAI	GACNNNNGTC	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	6, 199, 200
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	4 cut(s)	198, 199, 295, 310
PspXI	VCTCGAGB	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	4, 412
PvuI	CGATCG	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	36
Rsr2I	CGGWCCG	1 cut(s)	310
RsrII	CGGWCCG	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	126, 425
SatI	GCNGC	6 cut(s)	209, 286, 289, 330, 364, 483
Sau3AI	GATC	5 cut(s)	4, 412, 428, 441, 451
Sau96I	GGNCC	4 cut(s)	198, 199, 295, 310
SchI	GAGTC	3 cut(s)	79, 99, 299
SduI	GDGCHC	2 cut(s)	202, 505
SetI	ASST	6 cut(s)	64, 147, 179, 228, 293, 334
SfcI	CTRYAG	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	295, 310
SlaI	CTCGAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	87, 94
SmoI	CTYRAG	2 cut(s)	87, 94
Sse9I	AATT	3 cut(s)	123, 157, 437
SsiI	CCGC	2 cut(s)	285, 482
TaaI	ACNGT	2 cut(s)	115, 216
TaqI	TCGA	2 cut(s)	80, 88
TaqII	GACCGA	4 cut(s)	66, 269, 312, 327
TasI	AATT	3 cut(s)	123, 157, 437
TauI	GCSGC	2 cut(s)	288, 485
TfiI	GAWTC	5 cut(s)	259, 276, 315, 405, 470
Tru1I	TTAA	2 cut(s)	126, 425
Tru9I	TTAA	2 cut(s)	126, 425
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	4 cut(s)	208, 288, 329, 363
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	295, 310
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.