Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

44299962 .. 44312342

Gene Structure 12381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG204200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGTTGATGAGGTTGAGTCCAGGAGCTTCTAACTCCAAGAGAGATTGCGAGTTCAGAGCTGGTAAGTTTCATGGAATCGGGAACAACTACGATTCGGTCGCGGCGGAGCCTAACCGACTTGACCTCGGACCGGAACTGGGGCTATGGGAGGCCAAACGAGGAAGCCGCCATTTGTTTTTTATCGGAGCAATGACAGGGGCTCTGGGGCTATGGTGGTGGAGGAGAGGATTCTTGGATCTAGGTGGATTAAGATCGGGTCAGATTGATCGACCCCGATCGGACACACATACTGGATTCTCTATTGGCGGCGACGACGAGCACACTTCGCAGATGACTTGGGTGGCTGGCTTAGCCATGGCGGATTGGGGAATTCTAGTTTCGAAGGATTTTGATATACGAAAGGAGGCAGATTTCCCACCTACTATCGTTCCGAACCATCCAACTAGTAGGAAGAATAGGACGGGGCTGATTGTGGGGATTGTTGTTGGTGGTGGAGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.84

Weight (kDa)

7.96

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AciI	CCGC	5 cut(s)	104, 107, 169, 309, 362
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	133, 140
AgsI	TTSAA	1 cut(s)	542
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	29, 62
AluI	AGCT	2 cut(s)	29, 62
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	324
BccI	CCATC	2 cut(s)	447, 506
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	24
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	3 cut(s)	242, 377, 447
BisI	GCNGC	3 cut(s)	105, 169, 310
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	106, 170, 311
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	127, 357
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 140
Bse1I	ACTGG	2 cut(s)	144, 298
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	127, 357
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	133, 140
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	144, 298
BseRI	GAGGAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	2 cut(s)	102, 281
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	2 cut(s)	102, 281
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	133, 140
BsnI	GGCC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	205, 324
Bsp143I	GATC	4 cut(s)	238, 254, 268, 278
Bsp1720I	GCTNAGC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	5 cut(s)	104, 107, 169, 309, 362
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	144, 298
BssECI	CCNNGG	2 cut(s)	127, 357
BssMI	GATC	4 cut(s)	238, 254, 268, 278
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	4 cut(s)	241, 257, 271, 281
BstMBI	GATC	4 cut(s)	238, 254, 268, 278
BstMCI	CGRYCG	2 cut(s)	102, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 353
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	131
CpoI	CGGWCCG	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	501
CspI	CGGWCCG	1 cut(s)	131
CviAII	CATG	2 cut(s)	74, 358
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	4 cut(s)	240, 256, 270, 280
DpnII	GATC	4 cut(s)	238, 254, 268, 278
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
EciI	GGCGGA	2 cut(s)	122, 377
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	77, 361
FaiI	YATR	6 cut(s)	75, 148, 214, 291, 359, 398
FatI	CATG	2 cut(s)	73, 357
Fnu4HI	GCNGC	3 cut(s)	105, 169, 310
FokI	GGATG	1 cut(s)	426
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	105, 169, 310
FspBI	CTAG	3 cut(s)	242, 377, 447
GluI	GCNGC	3 cut(s)	105, 169, 310
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	2 cut(s)	77, 361
HinfI	GANTC	5 cut(s)	19, 78, 95, 231, 297
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	6 cut(s)	59, 131, 188, 264, 283, 435
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	2 cut(s)	317, 320
HpyAV	CCTTC	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 353
HpyF3I	CTNAG	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	77, 361
Kzo9I	GATC	4 cut(s)	238, 254, 268, 278
LmnI	GCTCC	3 cut(s)	26, 109, 188
LpnPI	CCDG	9 cut(s)	9, 36, 48, 125, 147, 183, 191, 279, 333
MaeI	CTAG	3 cut(s)	242, 377, 447
MalI	GATC	4 cut(s)	240, 256, 270, 280
MboI	GATC	4 cut(s)	238, 254, 268, 278
MboII	GAAGA	2 cut(s)	466, 528
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	205, 324
MluCI	AATT	3 cut(s)	372, 522, 536
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	8 cut(s)	6, 137, 145, 155, 216, 221, 400, 491
MseI	TTAA	2 cut(s)	251, 507
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	328, 353
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	238, 254, 268, 278
NlaIII	CATG	2 cut(s)	77, 361
NlaIV	GGNNCC	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	383
PfeI	GAWTC	4 cut(s)	78, 95, 231, 297
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	106, 170, 311
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	251, 507
SatI	GCNGC	3 cut(s)	105, 169, 310
Sau3AI	GATC	4 cut(s)	238, 254, 268, 278
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	205, 324
SetI	ASST	7 cut(s)	17, 31, 64, 129, 247, 424, 502
SfuI	TTCGAA	1 cut(s)	383
SinI	GGWCC	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	3 cut(s)	372, 522, 536
SsiI	CCGC	5 cut(s)	104, 107, 169, 309, 362
SspMI	CTAG	3 cut(s)	242, 377, 447
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	357
TaqI	TCGA	2 cut(s)	271, 383
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	372, 522, 536
TauI	GCSGC	3 cut(s)	107, 171, 312
TfiI	GAWTC	4 cut(s)	78, 95, 231, 297
Tru1I	TTAA	2 cut(s)	251, 507
Tru9I	TTAA	2 cut(s)	251, 507
TspDTI	ATGAA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	3 cut(s)	242, 377, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.