Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000420.1

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

107707 .. 108944

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000420.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgcgagaaagacttaaagaagcgagccgccggggagagagagatcgagctggaggaaaagggaaggggaggaaaaccacaacccggaggaggctcaagctgttgaggatggtcacagcgagggagaagagggtgaaggtgataccctacatagcaagtgagtaccagaaagataaaatatggccaagacagacccggcctaacaaacgtgattatcaagttgttattgctgttgatgattcccacagtatgtctgagagttgctgtggggatgttgccattgaagctctggtgacagtgtgtcgtgcaatgtcacaactggaaaatactggcaaccttgctgttgcaagctttggaaagaaaggcaaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

124

Amino Acids

14.08

Weight (kDa)

10.43

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	182
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	84, 90
AgsI	TTSAA	1 cut(s)	284
AhdI	GACNNNNNGTC	1 cut(s)	300
AluBI	AGCT	4 cut(s)	50, 100, 287, 351
AluI	AGCT	4 cut(s)	50, 100, 287, 351
AoxI	GGCC	2 cut(s)	182, 197
AsuC2I	CCSGG	3 cut(s)	32, 85, 196
AsuHPI	GGTGA	3 cut(s)	145, 151, 304
BalI	TGGCCA	1 cut(s)	184
BccI	CCATC	1 cut(s)	103
BcnI	CCSGG	3 cut(s)	32, 85, 196
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	32, 85, 196
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmrFI	CCNGG	3 cut(s)	32, 85, 196
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	3 cut(s)	32, 85, 196
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 90
Bse1I	ACTGG	2 cut(s)	324, 334
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	114, 277
BseLI	CCNNNNNNNGG	2 cut(s)	84, 90
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	324, 334
BseRI	GAGGAG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	184, 199
BsiSI	CCGG	3 cut(s)	31, 85, 196
BslI	CCNNNNNNNGG	2 cut(s)	84, 90
BsnI	GGCC	2 cut(s)	184, 199
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	184, 199
BspCNI	CTCAG	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	324, 334
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	248, 298
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	25, 349
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	114, 277
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	30, 83, 194
BsuRI	GGCC	2 cut(s)	184, 199
BtsCI	GGATG	2 cut(s)	114, 277
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	25, 349
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	8 cut(s)	27, 50, 94, 100, 184, 199, 287, 351
CviKI_1	RGCY	8 cut(s)	27, 50, 94, 100, 184, 199, 287, 351
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	122
FaiI	YATR	4 cut(s)	152, 181, 251, 373
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	2 cut(s)	121, 284
Fsp4HI	GCNGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	184, 199
HapII	CCGG	3 cut(s)	31, 85, 196
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	3 cut(s)	31, 85, 196
HphI	GGTGA	3 cut(s)	145, 151, 304
Hpy188I	TCNGA	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	58, 130
HpyCH4III	ACNGT	2 cut(s)	248, 298
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	308, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	36, 44, 98, 179, 209, 275, 305, 315
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	3 cut(s)	112, 292, 312
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	184
MluNI	TGGCCA	1 cut(s)	184
MnlI	CCTC	7 cut(s)	47, 63, 81, 84, 99, 114, 123
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	3 cut(s)	31, 85, 196
MspR9I	CCNGG	3 cut(s)	32, 85, 196
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	3 cut(s)	32, 85, 196
NdeII	GATC	1 cut(s)	43
NmuCI	GTSAC	3 cut(s)	112, 292, 312
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	32, 85, 196
SetI	ASST	7 cut(s)	52, 102, 141, 211, 289, 339, 353
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	1 cut(s)	28
StyD4I	CCNGG	3 cut(s)	30, 83, 194
TaaI	ACNGT	2 cut(s)	248, 298
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	46
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	3 cut(s)	112, 292, 312
Tsp45I	GTSAC	3 cut(s)	112, 292, 312
TspRI	CASTG	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.