Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

21774682 .. 21779157

Gene Structure 4476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAGCTTTCACCGAATCTTGGGTTTCTTCTTCAATCCAAGAAAAACCCAAAGGAGGAGGTATCGGTATCGACAGTAGCAATGGTGTGGCAAAGGAAAAACTGGTGGAAATGAAGGCTTTATTGGCAATTGTCGAGGACAAGTACTTGAACTTCACTTGTGTTTTGGTGATACCCTACATAGCAAGTGAGTACCAGAAAGATAAAATATGGCTAAGACAGACCCGGCCTAACAAACGTGATTATCAAGTTGTTATTGTTGTTGATGATTCCCACAGTATGTCTAAGAGTTGCTGTGGGGATGTTGCTATTGAAGCTCTGGTGACAGTGTGTCGTGCAATGTCACAACTGGTGCTTCTTGGGGATGTTGGAGTTGGAAAGTCTAGTCTAGTGTTGCGCTTTGTTAAAGGACAGTTCATTGAATTTCAGGAATTGACAATTGGTGCTGCCTTCTTCTCGCAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGTAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGAGGAGCTGCTATTGCTGCAATAATTGTGTATGATTTAAATAATCAAGGTTATGCATATATACTCACGCACCCCGGAATACCTTCCGTCTTCTATGACCACTTCTATGATTCGGGTGATTCCATTCATGATCAGATTGTGAAACTGGTACAACAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

237

Amino Acids

26.38

Weight (kDa)

5.37

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	117 - 200	1.7e-27	Ras family
Roc	PF08477	117 - 198	2e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	2 cut(s)	525, 538
AccB7I	CCANNNNNTGG	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	422, 491
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	4 cut(s)	146, 194, 527, 702
AfiI	CCNNNNNNNGG	3 cut(s)	21, 56, 535
AgsI	TTSAA	4 cut(s)	36, 151, 314, 422
AhdI	GACNNNNNGTC	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 423, 455
AluBI	AGCT	3 cut(s)	8, 317, 560
AluI	AGCT	3 cut(s)	8, 317, 560
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	3 cut(s)	446, 560, 569
ApoI	RAATTY	2 cut(s)	422, 491
Asp700I	GAANNNNTTC	1 cut(s)	634
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	2 cut(s)	399, 541
AsuC2I	CCSGG	2 cut(s)	226, 627
AsuHPI	GGTGA	4 cut(s)	4, 181, 334, 680
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BanI	GGYRCC	2 cut(s)	525, 538
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	433, 547, 556
BciVI	GTATCC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	2 cut(s)	226, 627
BfaI	CTAG	2 cut(s)	384, 389
BfoI	RGCGCY	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	447, 561, 570
BlsI	GCNGC	3 cut(s)	448, 562, 571
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	226, 627
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	527, 540
BmrFI	CCNGG	2 cut(s)	226, 627
BpiI	GAAGAC	1 cut(s)	634
BpuMI	CCSGG	2 cut(s)	226, 627
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 56, 535
Bse1I	ACTGG	3 cut(s)	108, 354, 702
Bse3DI	GCAATG	2 cut(s)	88, 345
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	307, 370
BseLI	CCNNNNNNNGG	3 cut(s)	21, 56, 535
BseMI	GCAATG	2 cut(s)	88, 345
BseNI	ACTGG	3 cut(s)	108, 354, 702
BseRI	GAGGAG	2 cut(s)	72, 570
BseXI	GCAGC	3 cut(s)	433, 547, 556
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	2 cut(s)	525, 538
BsiSI	CCGG	2 cut(s)	226, 627
BslI	CCNNNNNNNGG	3 cut(s)	21, 56, 535
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	682
BspANI	GGCC	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	527, 540
BspT107I	GGYRCC	2 cut(s)	525, 538
BsrDI	GCAATG	2 cut(s)	88, 345
BsrI	ACTGG	3 cut(s)	108, 354, 702
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	1 cut(s)	682
BssNI	GRCGYC	1 cut(s)	539
Bst4CI	ACNGT	6 cut(s)	77, 278, 328, 414, 487, 511
BstACI	GRCGYC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	215, 285
BstF5I	GGATG	2 cut(s)	307, 370
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	399, 541
BstKTI	GATC	1 cut(s)	685
BstMBI	GATC	1 cut(s)	682
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 314, 566, 569
BstSCI	CCNGG	2 cut(s)	224, 625
BstV1I	GCAGC	3 cut(s)	433, 547, 556
BstV2I	GAAGAC	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	307, 370
BtsIMutI	CAGTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	2 cut(s)	399, 541
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	4 cut(s)	145, 193, 526, 701
CviAII	CATG	1 cut(s)	680
CviJI	RGCY	7 cut(s)	8, 119, 214, 229, 317, 470, 560
CviKI_1	RGCY	7 cut(s)	8, 119, 214, 229, 317, 470, 560
CviQI	GTAC	4 cut(s)	145, 193, 526, 701
DdeI	CTNAG	2 cut(s)	215, 285
DinI	GGCGCC	1 cut(s)	540
DpnI	GATC	1 cut(s)	684
DpnII	GATC	1 cut(s)	682
DraI	TTTAAA	1 cut(s)	591
DriI	GACNNNNNGTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	610
EgeI	GGCGCC	1 cut(s)	540
EheI	GGCGCC	1 cut(s)	540
FaeI	CATG	1 cut(s)	683
FatI	CATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	3 cut(s)	447, 561, 570
FokI	GGATG	2 cut(s)	314, 377
Fsp4HI	GCNGC	3 cut(s)	447, 561, 570
FspBI	CTAG	2 cut(s)	384, 389
GlaI	GCGC	2 cut(s)	398, 540
GluI	GCNGC	3 cut(s)	447, 561, 570
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	2 cut(s)	226, 627
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	399, 541
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	1 cut(s)	683
Hin6I	GCGC	2 cut(s)	397, 539
HinP1I	GCGC	2 cut(s)	397, 539
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	17, 269, 662, 671
HpaII	CCGG	2 cut(s)	226, 627
HphI	GGTGA	4 cut(s)	4, 181, 334, 680
Hpy188I	TCNGA	1 cut(s)	687
Hpy188III	TCNNGA	3 cut(s)	428, 518, 680
HpyAV	CCTTC	3 cut(s)	109, 460, 645
HpyCH4III	ACNGT	6 cut(s)	77, 278, 328, 414, 487, 511
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	338, 572, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 314, 566, 569
HpyF3I	CTNAG	2 cut(s)	215, 285
HpySE526I	ACGT	1 cut(s)	238
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	1 cut(s)	683
HspAI	GCGC	2 cut(s)	397, 539
KasI	GGCGCC	1 cut(s)	538
KpnI	GGTACC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	1 cut(s)	682
LmnI	GCTCC	1 cut(s)	557
LpnPI	CCDG	8 cut(s)	89, 209, 239, 305, 335, 413, 640, 683
Lsp1109I	GCAGC	3 cut(s)	433, 547, 556
MaeI	CTAG	2 cut(s)	384, 389
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	322, 342
MalI	GATC	1 cut(s)	684
MboI	GATC	1 cut(s)	682
MboII	GAAGA	4 cut(s)	21, 24, 445, 634
MfeI	CAATTG	2 cut(s)	129, 438
MluCI	AATT	6 cut(s)	129, 422, 431, 438, 491, 576
Mly113I	GGCGCC	1 cut(s)	539
MmeI	TCCRAC	2 cut(s)	349, 355
MnlI	CCTC	5 cut(s)	50, 53, 130, 516, 548
Mph1103I	ATGCAT	1 cut(s)	610
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	2 cut(s)	405, 590
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	2 cut(s)	226, 627
MspR9I	CCNGG	2 cut(s)	226, 627
MunI	CAATTG	2 cut(s)	129, 438
MwoI	GCNNNNNNNGC	4 cut(s)	125, 314, 566, 569
NarI	GGCGCC	1 cut(s)	539
NciI	CCSGG	2 cut(s)	226, 627
NdeII	GATC	1 cut(s)	682
NlaIII	CATG	1 cut(s)	683
NlaIV	GGNNCC	2 cut(s)	527, 540
NmuCI	GTSAC	2 cut(s)	322, 342
NsiI	ATGCAT	1 cut(s)	610
PagI	TCATGA	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	4 cut(s)	17, 269, 662, 671
PflMI	CCANNNNNTGG	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	448, 562, 571
PluTI	GGCGCC	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	527, 540
RsaI	GTAC	4 cut(s)	146, 194, 527, 702
RsaNI	GTAC	4 cut(s)	145, 193, 526, 701
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	405, 590
SatI	GCNGC	3 cut(s)	447, 561, 570
Sau3AI	GATC	1 cut(s)	682
ScaI	AGTACT	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	226, 627
SetI	ASST	9 cut(s)	10, 64, 241, 319, 517, 527, 562, 604, 637
SfoI	GGCGCC	1 cut(s)	540
SmiI	ATTTAAAT	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	657
Sse9I	AATT	6 cut(s)	129, 422, 431, 438, 491, 576
SspDI	GGCGCC	1 cut(s)	538
SspMI	CTAG	2 cut(s)	384, 389
StyD4I	CCNGG	2 cut(s)	224, 625
SwaI	ATTTAAAT	1 cut(s)	591
TaaI	ACNGT	6 cut(s)	77, 278, 328, 414, 487, 511
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	72, 135
TasI	AATT	6 cut(s)	129, 422, 431, 438, 491, 576
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	4 cut(s)	17, 269, 662, 671
Tru1I	TTAA	2 cut(s)	405, 590
Tru9I	TTAA	2 cut(s)	405, 590
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	2 cut(s)	322, 342
TseI	GCWGC	3 cut(s)	446, 560, 569
Tsp45I	GTSAC	2 cut(s)	322, 342
TspDTI	ATGAA	3 cut(s)	128, 406, 668
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	535
XapI	RAATTY	2 cut(s)	422, 491
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	2 cut(s)	384, 389
ZrmI	AGTACT	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.