Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

38442815 .. 38444136

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGTTGATGAGGTTGAGTCCAGGAGCTTTTAACTCCAAGAGAGACTGCGAGTTCAGAGCTGGTAAGTTTCATGGAATCGGGAACAACTACGATTCGGTCGCTGCGGAGCCAAACCGACTTGACCTCGGACCGGAACTGGGGCTCTGGGAGGCCAAACTAGGAAGCCGCCATTTGTTTTTGATCGGAGCAATGACGGGGGCTCTGGGGCTATGGTGGTGGAGGAGAGGATTCTTGGATCTGGGTGGATTAAGATTGGGTCAGATTGATCGACCCCGATCGGACACACATACTGGATTCTCTATTGGCGGCGACGACAAGCACGAAGTATCGGGCCTCAATGGAATCCGTTTGGACCAAATTGGATTCTTTACCGAAGGAGCAACTCTGGTCTTTTTCGTCTCTCGACAGCTTCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

7.98

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	107, 169, 309
AclWI	GGATC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	133, 140
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	29, 62, 412, 419
AluI	AGCT	4 cut(s)	29, 62, 412, 419
Alw26I	GTCTC	2 cut(s)	39, 406
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	153, 334
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	131, 334, 355
AvaII	GGWCC	2 cut(s)	131, 355
BanII	GRGCYC	2 cut(s)	147, 205
BbvI	GCAGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	39, 406
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	3 cut(s)	105, 169, 310
BlsI	GCNGC	3 cut(s)	106, 170, 311
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	2 cut(s)	131, 355
BmgT120I	GGNCC	3 cut(s)	131, 334, 355
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 140
Bse1I	ACTGG	2 cut(s)	144, 298
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	133, 140
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	144, 298
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	91
Bsh1285I	CGRYCG	2 cut(s)	102, 281
BshFI	GGCC	2 cut(s)	155, 336
BsiEI	CGRYCG	2 cut(s)	102, 281
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	133, 140
BsmAI	GTCTC	2 cut(s)	39, 406
BsmBI	CGTCTC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	155, 336
Bsp1286I	GDGCHC	2 cut(s)	147, 205
Bsp143I	GATC	4 cut(s)	183, 238, 268, 278
BspACI	CCGC	3 cut(s)	107, 169, 309
BspANI	GGCC	2 cut(s)	155, 336
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	144, 298
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	4 cut(s)	183, 238, 268, 278
Bst2UI	CCWGG	1 cut(s)	24
BstKTI	GATC	4 cut(s)	186, 241, 271, 281
BstMAI	GTCTC	2 cut(s)	39, 406
BstMBI	GATC	4 cut(s)	183, 238, 268, 278
BstMCI	CGRYCG	2 cut(s)	102, 281
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	155, 336
Cfr13I	GGNCC	3 cut(s)	131, 334, 355
CpoI	CGGWCCG	1 cut(s)	131
CspI	CGGWCCG	1 cut(s)	131
CviAII	CATG	1 cut(s)	74
DpnI	GATC	4 cut(s)	185, 240, 270, 280
DpnII	GATC	4 cut(s)	183, 238, 268, 278
Eco24I	GRGCYC	2 cut(s)	147, 205
Eco47I	GGWCC	2 cut(s)	131, 355
EcoRII	CCWGG	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	147, 205
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	1 cut(s)	77
FaiI	YATR	3 cut(s)	75, 214, 291
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	105, 169, 310
FriOI	GRGCYC	2 cut(s)	147, 205
Fsp4HI	GCNGC	3 cut(s)	105, 169, 310
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	105, 169, 310
HaeIII	GGCC	2 cut(s)	155, 336
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	7 cut(s)	19, 78, 95, 231, 297, 345, 366
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	5 cut(s)	59, 131, 188, 264, 283
Hpy188III	TCNNGA	2 cut(s)	82, 405
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	183, 238, 268, 278
LmnI	GCTCC	4 cut(s)	26, 109, 188, 380
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	161
MalI	GATC	4 cut(s)	185, 240, 270, 280
MboI	GATC	4 cut(s)	183, 238, 268, 278
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	147, 205
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	6 cut(s)	6, 137, 145, 216, 221, 347
MseI	TTAA	3 cut(s)	33, 251, 421
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	183, 238, 268, 278
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 412
PfeI	GAWTC	6 cut(s)	78, 95, 231, 297, 345, 366
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	106, 170, 311
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	3 cut(s)	131, 334, 355
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	281
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	33, 251, 421
SatI	GCNGC	3 cut(s)	105, 169, 310
Sau3AI	GATC	4 cut(s)	183, 238, 268, 278
Sau96I	GGNCC	3 cut(s)	131, 334, 355
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	147, 205
SetI	ASST	6 cut(s)	17, 31, 64, 129, 414, 421
SinI	GGWCC	2 cut(s)	131, 355
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	107, 169, 309
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	22
TaqI	TCGA	3 cut(s)	271, 406, 415
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	360
TauI	GCSGC	2 cut(s)	171, 312
TfiI	GAWTC	6 cut(s)	78, 95, 231, 297, 345, 366
Tru1I	TTAA	3 cut(s)	33, 251, 421
Tru9I	TTAA	3 cut(s)	33, 251, 421
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	131, 355
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.