RLG00000036480

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002407
Physical Location & Seq
Forward (+)
81150650 .. 81153250
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036480

Sequence Viewer

Length: 1170 bp
ATGCTCGACCCGAATTTGACCTTGGTGGAGCCCCAGACACGCCAGCACCGCCGGCCCGAACTTTTGCTCGACCTCACACAGTCCCTTAGGGTTTTCCACGGTCACAATCGTATCAAACAGCTTCTAATCTTTGAAATTGAAGACGACGATCTTGTGGAGAAGAACAACTACGATTCGGTCGCGGTGGAGCTTGACCGACTTGACCTCATACCGGAACGAGCGCTCACTGACGCAGCGGGAATGGCGATCTTCATTAATCATGACCTTGTTGGAGGGGTAGAACGAGGAAGCCGCCATTTGTTTTTGATCGGAGCAATGACGGGGGCTTTGGGGCCATGGTGTGGTCGTCACACTTTGAAGCATGAAGATGGATATGTTTTGATTGACAGAGATGGTGATTATTTTGGATATATTCTTAATTGGTTAAGAGATGGTGATGTTCCTGCTTTAGAAGCTCATACATACAAACAACTTCTAAAAGAGGCAGAATACTTCCAGCTAAGTGGTCTAATAGATAGAATAAAGATTAGTGACTTTACTCGTATTGAGGTCATAAAATTGACAAGGTTTCGAGGTGTTAATCTTTGTGGCCTGGATCTATCAAAACTGGACTCGTCAGATATGGACTTCAGCTATGCATGCCTGCTAAATGTATCATTTTCATACATTGAGGGTGCTACATTTTGTGATTCATATATGCAAGCAAGTGTATTTACTGAAGCAAAAATTAGTGGAGTCTCTTTTGTTGGTGCAAATCTTGAACACACAAATTTCAGTCGTGCCAATAGTTCAGGTGCATCCCATAAGGGTGTTTTCTTTGCGGGTGATGCTGGGCGTGTCATATTTGACAATGCAACTTTGGAAAAATGTGAATTTGTCAAGTCAAATATCTGGGGAGCTTCTTTAACAAGTGCATGTTTAATCAATTGCAGCTTTGTTGAGGCGGACTTGAGTAATGCAAATCTTCAAGATGCTGATGTTACAAACACTAACTTAGAGGGGACCATACTGAAACAAGCCAGTATGATGGGTATCAAGTTGAGTAATACTAATTTGAAAGGTGCAAATCTTGTAGATGCTTATTTACCTGGAGTGGATCTCCAAGGAGCTTGTTTGGATCGTGCAAATCTGGATGGAGCCACGCTTTTTCATGATCCTCCTCATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

390

Amino Acids

43.05

Weight (kDa)

4.98

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 92 - 171 5.3e-09 BTB/POZ domain
Pentapeptide_4 PF13599 281 - 357 2.8e-09 Pentapeptide repeat region
Pentapeptide PF00805 300 - 337 1.6e-08 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 340 - 379 1.2e-09 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AccII CGCG 1 cut(s) 182
AciI CCGC 6 cut(s) 49, 182, 236, 292, 821, 944
AclWI GGATC 4 cut(s) 603, 1104, 1125, 1148
AcsI RAATTY 3 cut(s) 13, 769, 872
AcuI CTGAAG 2 cut(s) 613, 738
AfeI AGCGCT 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 211, 341
AgsI TTSAA 6 cut(s) 134, 140, 358, 761, 968, 1057
AjnI CCWGG 2 cut(s) 591, 1087
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 8 cut(s) 121, 190, 455, 499, 633, 899, 933, 1109
AluI AGCT 8 cut(s) 121, 190, 455, 499, 633, 899, 933, 1109
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 4 cut(s) 603, 1104, 1125, 1148
Aor51HI AGCGCT 1 cut(s) 222
AoxI GGCC 3 cut(s) 53, 332, 589
ApeKI GCWGC 2 cut(s) 233, 930
ApoI RAATTY 3 cut(s) 13, 769, 872
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AseI ATTAAT 1 cut(s) 255
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 3 cut(s) 54, 332, 1002
AsuHPI GGTGA 3 cut(s) 407, 446, 836
AvaII GGWCC 1 cut(s) 1002
AxyI CCTNAGG 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 94, 127
BanII GRGCYC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 245, 942
BccI CCATC 5 cut(s) 362, 386, 425, 1021, 1127
BciT130I CCWGG 2 cut(s) 593, 1089
BcoDI GTCTC 1 cut(s) 742
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 3 cut(s) 234, 292, 931
BlsI GCNGC 3 cut(s) 235, 293, 932
Bme1390I CCNGG 2 cut(s) 593, 1089
Bme18I GGWCC 1 cut(s) 1002
BmgT120I GGNCC 3 cut(s) 54, 332, 1002
BmiI GGNNCC 4 cut(s) 30, 333, 1003, 1138
BmrFI CCNGG 2 cut(s) 593, 1089
BmsI GCATC 4 cut(s) 806, 817, 961, 1066
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 1083, 1115
BpmI CTGGAG 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 970
BsaBI GATNNNNATC 1 cut(s) 1031
BsaJI CCNNGG 4 cut(s) 21, 97, 335, 1102
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 341
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 612, 1020
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 1031
BseBI CCWGG 2 cut(s) 593, 1089
BseDI CCNNGG 4 cut(s) 21, 97, 335, 1102
BseGI GGATG 2 cut(s) 797, 1138
BseJI GATNNNNATC 1 cut(s) 1031
BseLI CCNNNNNNNGG 2 cut(s) 211, 341
BseMI GCAATG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 612, 1020
BseRI GAGGAG 1 cut(s) 1149
BseXI GCAGC 2 cut(s) 245, 942
BseYI CCCAGC 1 cut(s) 830
Bsh1236I CGCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 55, 334, 591
BsiEI CGRYCG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 52, 212
BslFI GGGAC 2 cut(s) 67, 1015
BslI CCNNNNNNNGG 2 cut(s) 211, 341
BsmAI GTCTC 1 cut(s) 742
BsmFI GGGAC 2 cut(s) 67, 1015
BsnI GGCC 3 cut(s) 55, 334, 591
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 6 cut(s) 49, 182, 236, 292, 821, 944
BspANI GGCC 3 cut(s) 55, 334, 591
BspFNI CGCG 1 cut(s) 182
BspHI TCATGA 2 cut(s) 259, 1150
BspLI GGNNCC 4 cut(s) 30, 333, 1003, 1138
BspPI GGATC 4 cut(s) 603, 1104, 1125, 1148
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 2 cut(s) 612, 1020
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 4 cut(s) 21, 97, 335, 1102
BssMI GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
BssT1I CCWWGG 3 cut(s) 21, 335, 1102
Bst2UI CCWGG 2 cut(s) 593, 1089
Bst4CI ACNGT 2 cut(s) 81, 101
BstC8I GCNNGC 5 cut(s) 44, 53, 640, 644, 702
BstDEI CTNAG 3 cut(s) 86, 500, 994
BstDSI CCRYGG 2 cut(s) 97, 335
BstF5I GGATG 2 cut(s) 797, 1138
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 7 cut(s) 151, 249, 309, 598, 1099, 1120, 1156
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 6 cut(s) 48, 52, 242, 452, 639, 827
BstNI CCWGG 2 cut(s) 593, 1089
BstNSI RCATGY 2 cut(s) 642, 918
BstSCI CCNGG 2 cut(s) 591, 1087
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 245, 942
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 595, 1096
BstXI CCANNNNNNTGG 2 cut(s) 503, 1027
BstYI RGATCY 2 cut(s) 595, 1096
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 3 cut(s) 55, 334, 591
BtgI CCRYGG 2 cut(s) 97, 335
BtsCI GGATG 2 cut(s) 797, 1138
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 5 cut(s) 44, 53, 640, 644, 702
CciI TCATGA 2 cut(s) 259, 1150
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 3 cut(s) 54, 332, 1002
CseI GACGC 1 cut(s) 239
CviAII CATG 6 cut(s) 260, 336, 362, 639, 915, 1151
DdeI CTNAG 3 cut(s) 86, 500, 994
DpnI GATC 7 cut(s) 150, 248, 308, 597, 1098, 1119, 1155
DpnII GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
EciI GGCGGA 1 cut(s) 959
Eco130I CCWWGG 3 cut(s) 21, 335, 1102
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 1002
Eco47III AGCGCT 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 613, 738
Eco81I CCTNAGG 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 591, 1087
EcoT14I CCWWGG 3 cut(s) 21, 335, 1102
EcoT22I ATGCAT 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 3 cut(s) 21, 335, 1102
FaeI CATG 6 cut(s) 263, 339, 365, 642, 918, 1154
FaqI GGGAC 2 cut(s) 67, 1015
FatI CATG 6 cut(s) 259, 335, 361, 638, 914, 1150
FauI CCCGC 2 cut(s) 229, 814
Fnu4HI GCNGC 3 cut(s) 234, 292, 931
FokI GGATG 2 cut(s) 784, 1145
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 234, 292, 931
GlaI GCGC 1 cut(s) 222
GluI GCNGC 3 cut(s) 234, 292, 931
GsaI CCCAGC 1 cut(s) 834
GsuI CTGGAG 1 cut(s) 1110
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 3 cut(s) 55, 334, 591
HapII CCGG 2 cut(s) 52, 212
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 223
Hin1II CATG 6 cut(s) 263, 339, 365, 642, 918, 1154
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 4 cut(s) 173, 611, 689, 735
HpaII CCGG 2 cut(s) 52, 212
HphI GGTGA 3 cut(s) 407, 446, 836
Hpy188I TCNGA 2 cut(s) 311, 619
Hpy188III TCNNGA 5 cut(s) 260, 758, 968, 1130, 1151
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 81, 101
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 52, 242, 452, 639, 827
HpyF3I CTNAG 3 cut(s) 86, 500, 994
Hsp92II CATG 6 cut(s) 263, 339, 365, 642, 918, 1154
HspAI GCGC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Kzo9I GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
LmnI GCTCC 6 cut(s) 28, 187, 311, 896, 1106, 1136
Lsp1109I GCAGC 2 cut(s) 245, 942
LweI GCATC 4 cut(s) 806, 817, 961, 1066
MaeIII GTNAC 4 cut(s) 101, 347, 530, 979
MalI GATC 7 cut(s) 150, 248, 308, 597, 1098, 1119, 1155
MboI GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
MboII GAAGA 5 cut(s) 152, 172, 241, 377, 956
MfeI CAATTG 1 cut(s) 925
MflI RGATCY 2 cut(s) 595, 1096
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 9 cut(s) 13, 135, 418, 557, 726, 769, 872, 925, 1051
MlyI GAGTC 2 cut(s) 605, 744
MmeI TCCRAC 1 cut(s) 250
Mph1103I ATGCAT 1 cut(s) 640
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 6 cut(s) 255, 417, 425, 579, 905, 920
MslI CAYNNNNRTG 2 cut(s) 366, 807
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 52, 212
MspR9I CCNGG 2 cut(s) 593, 1089
MunI CAATTG 1 cut(s) 925
MvaI CCWGG 2 cut(s) 593, 1089
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 6 cut(s) 48, 52, 242, 452, 639, 827
NaeI GCCGGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 335
NdeII GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
NgoMIV GCCGGC 1 cut(s) 51
NlaIII CATG 6 cut(s) 263, 339, 365, 642, 918, 1154
NlaIV GGNNCC 4 cut(s) 30, 333, 1003, 1138
NmuCI GTSAC 3 cut(s) 101, 347, 530
NsiI ATGCAT 1 cut(s) 640
NspI RCATGY 2 cut(s) 642, 918
PaeI GCATGC 1 cut(s) 642
PagI TCATGA 2 cut(s) 259, 1150
PdiI GCCGGC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 173, 689
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 3 cut(s) 235, 293, 932
PleI GAGTC 2 cut(s) 605, 743
PpsI GAGTC 2 cut(s) 605, 743
PshBI ATTAAT 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 591, 1087
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 2 cut(s) 591, 1087
PspN4I GGNNCC 4 cut(s) 30, 333, 1003, 1138
PspPI GGNCC 3 cut(s) 54, 332, 1002
PsuI RGATCY 2 cut(s) 595, 1096
RseI CAYNNNNRTG 2 cut(s) 366, 807
SaqAI TTAA 6 cut(s) 255, 417, 425, 579, 905, 920
SatI GCNGC 3 cut(s) 234, 292, 931
Sau3AI GATC 7 cut(s) 148, 246, 306, 595, 1096, 1117, 1153
Sau96I GGNCC 3 cut(s) 54, 332, 1002
SchI GAGTC 2 cut(s) 605, 744
ScrFI CCNGG 2 cut(s) 593, 1089
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 4 cut(s) 806, 817, 961, 1066
SinI GGWCC 1 cut(s) 1002
SmiMI CAYNNNNRTG 2 cut(s) 366, 807
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
SphI GCATGC 1 cut(s) 642
Sse9I AATT 9 cut(s) 13, 135, 418, 557, 726, 769, 872, 925, 1051
SsiI CCGC 6 cut(s) 49, 182, 236, 292, 821, 944
StyD4I CCNGG 2 cut(s) 591, 1087
StyI CCWWGG 3 cut(s) 21, 335, 1102
TaaI ACNGT 2 cut(s) 81, 101
TaqI TCGA 3 cut(s) 6, 69, 571
TaqII GACCGA 2 cut(s) 166, 210
TasI AATT 9 cut(s) 13, 135, 418, 557, 726, 769, 872, 925, 1051
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 2 cut(s) 173, 689
Tru1I TTAA 6 cut(s) 255, 417, 425, 579, 905, 920
Tru9I TTAA 6 cut(s) 255, 417, 425, 579, 905, 920
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 3 cut(s) 101, 347, 530
TseI GCWGC 2 cut(s) 233, 930
Tsp45I GTSAC 3 cut(s) 101, 347, 530
TspDTI ATGAA 5 cut(s) 241, 378, 651, 681, 1139
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 1002
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 3 cut(s) 13, 769, 872
XceI RCATGY 2 cut(s) 642, 918
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.