Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

23623012 .. 23623413

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATCTCCAATCCAAGAATCCTCACCCGAATGCTCGACCCGAATTTGACCCTGGTGGAGCCCCGGACAGGCCAACACTGCCGGCCCGGACTTTTGCTCGACCTCACACAGTCCCTTAGGGTTTTCCACTGTCACAATCGTATCAAACGGCTTCTAATCGTTGAAATTGAAGATGATGATCTTGTGGAGAAGAACAACTACGATTCGGTCGCCGTGGAGCCTGACCAACTTGACCTCGGACCGGAACGAGCGCTCACTAACGCAGCGGGACTGGCAATCTTCATAGATCATGACCTTATTGGGCGGGCAGAACAAGGAAGCCGCCATTTGTTTTTGATCGGAGCAATGAAGGGGGCTCTGGGGCCATGGTGGTGGAGGAAAGGATTCTTGGATCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.04

Weight (kDa)

5.91

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	266, 304, 322
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	43
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	68, 241
AgsI	TTSAA	2 cut(s)	164, 170
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	1 cut(s)	371
AlwI	GGATC	1 cut(s)	399
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	3 cut(s)	70, 83, 362
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	84, 239, 362
AsuC2I	CCSGG	2 cut(s)	64, 87
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	116
BaeI	ACNNNNGTAYC	2 cut(s)	124, 157
BanII	GRGCYC	2 cut(s)	63, 358
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbvI	GCAGC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	164, 197
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	2 cut(s)	64, 87
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	2 cut(s)	264, 322
BlsI	GCNGC	2 cut(s)	265, 323
Bme1390I	CCNGG	3 cut(s)	53, 64, 87
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	84, 239, 362
BmiI	GGNNCC	3 cut(s)	60, 219, 363
BmrFI	CCNGG	3 cut(s)	53, 64, 87
BpuMI	CCSGG	2 cut(s)	64, 87
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	5 cut(s)	51, 62, 213, 235, 365
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 241
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	5 cut(s)	51, 62, 213, 235, 365
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	68, 241
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	72, 85, 364
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	64, 82, 87, 242
BslFI	GGGAC	2 cut(s)	97, 282
BslI	CCNNNNNNNGG	2 cut(s)	68, 241
BsmFI	GGGAC	2 cut(s)	97, 282
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	72, 85, 364
Bsp1286I	GDGCHC	2 cut(s)	63, 358
Bsp143I	GATC	5 cut(s)	3, 178, 286, 336, 391
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	3 cut(s)	266, 304, 322
BspANI	GGCC	3 cut(s)	72, 85, 364
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	60, 219, 363
BspPI	GGATC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	5 cut(s)	51, 62, 213, 235, 365
BssMI	GATC	5 cut(s)	3, 178, 286, 336, 391
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	111, 131
BstC8I	GCNNGC	2 cut(s)	83, 306
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	2 cut(s)	213, 365
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	5 cut(s)	6, 181, 289, 339, 394
BstMBI	GATC	5 cut(s)	3, 178, 286, 336, 391
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 272
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	51, 62, 85
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	391
Bsu36I	CCTNAGG	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	72, 85, 364
BtgI	CCRYGG	2 cut(s)	213, 365
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 127
Cac8I	GCNNGC	2 cut(s)	83, 306
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	84, 239, 362
CpoI	CGGWCCG	1 cut(s)	239
CspI	CGGWCCG	1 cut(s)	239
CviAII	CATG	2 cut(s)	290, 366
CviJI	RGCY	8 cut(s)	61, 72, 85, 151, 220, 321, 356, 364
CviKI_1	RGCY	8 cut(s)	61, 72, 85, 151, 220, 321, 356, 364
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	5 cut(s)	5, 180, 288, 338, 393
DpnII	GATC	5 cut(s)	3, 178, 286, 336, 391
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	63, 358
Eco47I	GGWCC	1 cut(s)	239
Eco47III	AGCGCT	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	63, 358
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	293, 369
FaiI	YATR	3 cut(s)	284, 291, 367
FaqI	GGGAC	2 cut(s)	97, 282
FatI	CATG	2 cut(s)	289, 365
FauI	CCCGC	2 cut(s)	259, 297
Fnu4HI	GCNGC	2 cut(s)	264, 322
FriOI	GRGCYC	2 cut(s)	63, 358
Fsp4HI	GCNGC	2 cut(s)	264, 322
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	264, 322
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	72, 85, 364
HapII	CCGG	4 cut(s)	64, 82, 87, 242
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	293, 369
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	3 cut(s)	18, 203, 384
HpaII	CCGG	4 cut(s)	64, 82, 87, 242
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	239, 341
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	111, 131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 272
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	293, 369
HspAI	GCGC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	5 cut(s)	3, 178, 286, 336, 391
LmnI	GCTCC	3 cut(s)	58, 217, 341
Lsp1109I	GCAGC	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	5 cut(s)	5, 180, 288, 338, 393
MboI	GATC	5 cut(s)	3, 178, 286, 336, 391
MboII	GAAGA	3 cut(s)	182, 202, 271
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	63, 358
MluCI	AATT	2 cut(s)	43, 165
MnlI	CCTC	4 cut(s)	32, 113, 245, 369
MroNI	GCCGGC	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	383
MslI	CAYNNNNRTG	2 cut(s)	29, 370
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	4 cut(s)	64, 82, 87, 242
MspR9I	CCNGG	3 cut(s)	53, 64, 87
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	78, 272
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	64, 87
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	5 cut(s)	3, 178, 286, 336, 391
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	2 cut(s)	293, 369
NlaIV	GGNNCC	3 cut(s)	60, 219, 363
NmuCI	GTSAC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	289
PctI	GAATGC	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	18, 203, 384
PkrI	GCNGC	2 cut(s)	265, 323
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	60, 219, 363
PspPI	GGNCC	3 cut(s)	84, 239, 362
PsuI	RGATCY	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	29, 370
Rsr2I	CGGWCCG	1 cut(s)	239
RsrII	CGGWCCG	1 cut(s)	239
SatI	GCNGC	2 cut(s)	264, 322
Sau3AI	GATC	5 cut(s)	3, 178, 286, 336, 391
Sau96I	GGNCC	3 cut(s)	84, 239, 362
ScrFI	CCNGG	3 cut(s)	53, 64, 87
SduI	GDGCHC	2 cut(s)	63, 358
SetI	ASST	3 cut(s)	105, 237, 297
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	29, 370
Sse9I	AATT	2 cut(s)	43, 165
SsiI	CCGC	3 cut(s)	266, 304, 322
StyD4I	CCNGG	3 cut(s)	51, 62, 85
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	111, 131
TaqI	TCGA	2 cut(s)	36, 99
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	43, 165
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	18, 203, 384
TscAI	CASTG	2 cut(s)	83, 134
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	271, 362
TspRI	CASTG	2 cut(s)	83, 134
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.