Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

13187224 .. 13187610

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG074700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGTTGATGAGGTTGAGTCCAGCAGCTTCTAACTCCAAGAGAGACTGCGAGTTCAGAGCTGGTAAGTTTCATGGAATCGGGAACAACTACGATTCGGTCGCGGCGGAGCCTGACCGACTTGACCTCGGACAGGAACTGGGGCTATGGGAGGCCAAACGAGGAAGTCGCCATTTGTTTTTGATCGGAGCAATGACGGGGGCTTTGGGGCTATGGTGGTGGAGGAGAGGATTCTTGGATCTGGGTGGATTAAGATCGGGTCAGATTGATCGACCCCGATCGGACACACATACTGGATTCTCTATTGGCGGCGACGACAAGCACGAAGTGTGCTCGTTAGATGCAGATGACTTGGGTGGCTGGCTTAGCCATGGCAGATTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

6.18

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	104, 107, 309
AclWI	GGATC	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	133
AluBI	AGCT	2 cut(s)	29, 62
AluI	AGCT	2 cut(s)	29, 62
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	26
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	39
BisI	GCNGC	3 cut(s)	27, 105, 310
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	3 cut(s)	28, 106, 311
BmiI	GGNNCC	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	127, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	144, 298
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	127, 370
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	144, 298
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	2 cut(s)	102, 281
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	2 cut(s)	102, 281
BsiHKAI	GWGCWC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	183, 238, 254, 268, 278
Bsp1720I	GCTNAGC	1 cut(s)	365
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	3 cut(s)	104, 107, 309
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	144, 298
BssECI	CCNNGG	2 cut(s)	127, 370
BssMI	GATC	5 cut(s)	183, 238, 254, 268, 278
BssT1I	CCWWGG	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	5 cut(s)	186, 241, 257, 271, 281
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	5 cut(s)	183, 238, 254, 268, 278
BstMCI	CGRYCG	2 cut(s)	102, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	139
CviAII	CATG	2 cut(s)	74, 371
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	5 cut(s)	185, 240, 256, 270, 280
DpnII	GATC	5 cut(s)	183, 238, 254, 268, 278
DraIII	CACNNNGTG	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	77, 374
FaiI	YATR	5 cut(s)	75, 148, 214, 291, 372
FatI	CATG	2 cut(s)	73, 370
Fnu4HI	GCNGC	3 cut(s)	27, 105, 310
Fsp4HI	GCNGC	3 cut(s)	27, 105, 310
GluI	GCNGC	3 cut(s)	27, 105, 310
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	77, 374
HinfI	GANTC	5 cut(s)	19, 78, 95, 231, 297
Hpy188I	TCNGA	5 cut(s)	59, 131, 188, 264, 283
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	77, 374
Kzo9I	GATC	5 cut(s)	183, 238, 254, 268, 278
LmnI	GCTCC	2 cut(s)	109, 188
LpnPI	CCDG	8 cut(s)	36, 48, 119, 125, 126, 227, 279, 346
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	331
MalI	GATC	5 cut(s)	185, 240, 256, 270, 280
MboI	GATC	5 cut(s)	183, 238, 254, 268, 278
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	6 cut(s)	6, 137, 145, 155, 216, 221
MseI	TTAA	1 cut(s)	251
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	5 cut(s)	183, 238, 254, 268, 278
NlaIII	CATG	2 cut(s)	77, 374
NlaIV	GGNNCC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	78, 95, 231, 297
PkrI	GCNGC	3 cut(s)	28, 106, 311
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	27, 105, 310
Sau3AI	GATC	5 cut(s)	183, 238, 254, 268, 278
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	4 cut(s)	17, 31, 64, 129
SfaNI	GCATC	1 cut(s)	331
SsiI	CCGC	3 cut(s)	104, 107, 309
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	1 cut(s)	271
TaqII	GACCGA	2 cut(s)	88, 132
TauI	GCSGC	2 cut(s)	107, 312
TfiI	GAWTC	4 cut(s)	78, 95, 231, 297
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	62
XagI	CCTNNNNNAGG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.