Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

34370415 .. 34371409

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCGAGACCTCACACAGTCCCTTAGGGTTTTCCACGGTCACAATTGTATCAAACGGCTTCTAATCGTTGAAATTGAAGACGACAATCTTGTGGAGAAGAACAACTACGATTCGGTCGCGGCGGAGCTTAACCTACTTGACCTCGAACCGGAACGAGCGCTCACTGACGCAGCGGGACTGGAGATCTTCATAGATCATGACCTTGTTGGGCTGGCAGAACAAGGAAGCCGCCATTTGTTTTTTATCGGAACAATGACGGGGGTATGGGGCCATGGTGGTGGAGGAGAGGATTCTTGGATCTGGGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.53

Weight (kDa)

4.52

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	119, 122, 173, 229
AclWI	GGATC	1 cut(s)	305
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	71, 77
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
AlwI	GGATC	1 cut(s)	305
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	161
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	3 cut(s)	120, 171, 229
BlsI	GCNGC	3 cut(s)	121, 172, 230
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	34, 271
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	34, 271
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	4, 189
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	4, 189
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	183, 193, 297
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	4 cut(s)	119, 122, 173, 229
BspANI	GGCC	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	34, 271
BssMI	GATC	3 cut(s)	183, 193, 297
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	18, 38
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	2 cut(s)	34, 271
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	186, 196, 300
BstMBI	GATC	3 cut(s)	183, 193, 297
BstMCI	CGRYCG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	183, 297
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	2 cut(s)	183, 297
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	2 cut(s)	34, 271
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	197, 272
CviJI	RGCY	5 cut(s)	58, 127, 211, 228, 270
CviKI_1	RGCY	5 cut(s)	58, 127, 211, 228, 270
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	3 cut(s)	185, 195, 299
DpnII	GATC	3 cut(s)	183, 193, 297
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	200, 275
FaiI	YATR	4 cut(s)	191, 198, 265, 273
FaqI	GGGAC	2 cut(s)	4, 189
FatI	CATG	2 cut(s)	196, 271
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	120, 171, 229
Fsp4HI	GCNGC	3 cut(s)	120, 171, 229
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	120, 171, 229
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	200, 275
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	110, 290
HpaII	CCGG	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	18, 38
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	200, 275
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	183, 193, 297
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	162, 164, 197, 286
Lsp1109I	GCAGC	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	185, 195, 299
MboI	GATC	3 cut(s)	183, 193, 297
MboII	GAAGA	3 cut(s)	89, 109, 178
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	2 cut(s)	183, 297
MluCI	AATT	2 cut(s)	43, 72
MnlI	CCTC	4 cut(s)	20, 152, 275, 280
MseI	TTAA	2 cut(s)	129, 310
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	183, 193, 297
NlaIII	CATG	2 cut(s)	200, 275
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	38
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	110, 290
PkrI	GCNGC	3 cut(s)	121, 172, 230
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	183, 297
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	129, 310
SatI	GCNGC	3 cut(s)	120, 171, 229
Sau3AI	GATC	3 cut(s)	183, 193, 297
Sau96I	GGNCC	1 cut(s)	268
SetI	ASST	5 cut(s)	12, 129, 135, 144, 204
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	43, 72
SsiI	CCGC	4 cut(s)	119, 122, 173, 229
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	18, 38
TaqI	TCGA	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	43, 72
TauI	GCSGC	2 cut(s)	122, 231
TfiI	GAWTC	2 cut(s)	110, 290
Tru1I	TTAA	2 cut(s)	129, 310
Tru9I	TTAA	2 cut(s)	129, 310
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.