RLG00000014965

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002407
Physical Location & Seq
Forward (+)
60071516 .. 60071956
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014965

Sequence Viewer

Length: 441 bp
ATGATCTCCCAAAACCAAACCCAAGATGATCTCCAATCCAAGAATCCTCACCCGAATGCTCGACCCATAATGCTCGACCCGAATTTGACCTTGGTGGAGCCCCAGACAAGCCAGCACCGCCGGCCCGAACTTTTGCTCGACCTCACACAGTCCCTTAGGGTTTTCCACGGTCACAATCGTATCAAACAGCTTCTAATCTTTGAAATTGAAGACGACGATCTTGCGGAGAAGAACAACTACGATTCGGTCGCGGTGGAGCTTGACCGACTTGACCTTAGATCGGAACGAGCGCTCACTGACGCAGCGGGACTGGCGATCTTCATTAATCATGACCTAGTTGGAGGGGCAGAACGAGGAAGCCGCCATTTGTTTTTGATCGGAGTAATGACGGGGGCTTTGGGGCCATGGTGGTGGAGGAGAGGATTCTTGGATTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

5.42

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 251
AciI CCGC 5 cut(s) 118, 224, 251, 305, 361
AcsI RAATTY 1 cut(s) 82
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 203, 209
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 190, 259
AluI AGCT 2 cut(s) 190, 259
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 2 cut(s) 122, 401
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
AseI ATTAAT 1 cut(s) 324
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 123, 401
AsuHPI GGTGA 1 cut(s) 41
AxyI CCTNAGG 1 cut(s) 155
BaeI ACNNNNGTAYC 2 cut(s) 163, 196
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 314
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BfaI CTAG 1 cut(s) 335
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 2 cut(s) 303, 361
BlsI GCNGC 2 cut(s) 304, 362
BmgT120I GGNCC 2 cut(s) 123, 401
BmiI GGNNCC 2 cut(s) 99, 402
BpiI GAAGAC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 90, 166, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 315
Bse21I CCTNAGG 1 cut(s) 155
BseDI CCNNGG 3 cut(s) 90, 166, 404
BseLI CCNNNNNNNGG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 430
BseXI GCAGC 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 251
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 124, 403
BsiEI CGRYCG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 121
BslFI GGGAC 2 cut(s) 136, 321
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 136, 321
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 2 cut(s) 124, 403
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 6 cut(s) 3, 28, 217, 278, 315, 375
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 5 cut(s) 118, 224, 251, 305, 361
BspANI GGCC 2 cut(s) 124, 403
BspFNI CGCG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 99, 402
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 90, 166, 404
BssMI GATC 6 cut(s) 3, 28, 217, 278, 315, 375
BssT1I CCWWGG 2 cut(s) 90, 404
Bst4CI ACNGT 2 cut(s) 150, 170
BstC8I GCNNGC 2 cut(s) 113, 122
BstDEI CTNAG 2 cut(s) 155, 275
BstDSI CCRYGG 2 cut(s) 166, 404
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 6 cut(s) 6, 31, 220, 281, 318, 378
BstMBI GATC 6 cut(s) 3, 28, 217, 278, 315, 375
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 117, 121, 311
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 155
BsuRI GGCC 2 cut(s) 124, 403
BtgI CCRYGG 2 cut(s) 166, 404
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 113, 122
CciI TCATGA 1 cut(s) 328
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 123, 401
CseI GACGC 1 cut(s) 308
CviAII CATG 2 cut(s) 329, 405
CviJI RGCY 8 cut(s) 100, 111, 124, 190, 259, 360, 395, 403
CviKI_1 RGCY 8 cut(s) 100, 111, 124, 190, 259, 360, 395, 403
DdeI CTNAG 2 cut(s) 155, 275
DpnI GATC 6 cut(s) 5, 30, 219, 280, 317, 377
DpnII GATC 6 cut(s) 3, 28, 217, 278, 315, 375
Eco130I CCWWGG 2 cut(s) 90, 404
Eco24I GRGCYC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 90, 404
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 90, 404
FaeI CATG 2 cut(s) 332, 408
FaiI YATR 3 cut(s) 68, 330, 406
FaqI GGGAC 2 cut(s) 136, 321
FatI CATG 2 cut(s) 328, 404
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 303, 361
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 303, 361
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 303, 361
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 2 cut(s) 124, 403
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 332, 408
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 3 cut(s) 43, 242, 423
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 283, 380
Hpy188III TCNNGA 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 150, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 121, 311
HpyF3I CTNAG 2 cut(s) 155, 275
Hsp92II CATG 2 cut(s) 332, 408
HspAI GCGC 1 cut(s) 290
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Kzo9I GATC 6 cut(s) 3, 28, 217, 278, 315, 375
LmnI GCTCC 2 cut(s) 97, 256
LpnPI CCDG 4 cut(s) 116, 125, 134, 296
Lsp1109I GCAGC 1 cut(s) 314
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 1 cut(s) 170
MalI GATC 6 cut(s) 5, 30, 219, 280, 317, 377
MboI GATC 6 cut(s) 3, 28, 217, 278, 315, 375
MboII GAAGA 3 cut(s) 221, 241, 310
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 82, 204
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 57, 152, 335, 347, 408, 413
MroNI GCCGGC 1 cut(s) 120
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 54, 409
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 121
Mva1269I GAATGC 1 cut(s) 61
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 117, 121, 311
NaeI GCCGGC 1 cut(s) 122
NcoI CCATGG 1 cut(s) 404
NdeII GATC 6 cut(s) 3, 28, 217, 278, 315, 375
NgoMIV GCCGGC 1 cut(s) 120
NlaIII CATG 2 cut(s) 332, 408
NlaIV GGNNCC 2 cut(s) 99, 402
NmuCI GTSAC 1 cut(s) 170
PagI TCATGA 1 cut(s) 328
PctI GAATGC 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 3 cut(s) 43, 242, 423
PkrI GCNGC 2 cut(s) 304, 362
PshBI ATTAAT 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 99, 402
PspPI GGNCC 2 cut(s) 123, 401
RseI CAYNNNNRTG 2 cut(s) 54, 409
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 303, 361
Sau3AI GATC 6 cut(s) 3, 28, 217, 278, 315, 375
Sau96I GGNCC 2 cut(s) 123, 401
SduI GDGCHC 1 cut(s) 102
SetI ASST 6 cut(s) 92, 144, 192, 261, 276, 336
SmiMI CAYNNNNRTG 2 cut(s) 54, 409
Sse9I AATT 2 cut(s) 82, 204
SsiI CCGC 5 cut(s) 118, 224, 251, 305, 361
SspMI CTAG 1 cut(s) 335
StyI CCWWGG 2 cut(s) 90, 404
TaaI ACNGT 2 cut(s) 150, 170
TaqI TCGA 3 cut(s) 61, 75, 138
TaqII GACCGA 2 cut(s) 235, 279
TasI AATT 2 cut(s) 82, 204
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 3 cut(s) 43, 242, 423
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 1 cut(s) 301
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 1 cut(s) 82
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.