Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

3743366 .. 3745228

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGCATGTCCATTGAAGAGCTTGATTTCGATGGTGGTAGTGGTGATGATGAGGCACGAAACGAGAGAGATGGAGACTTTGTTCACGGTAATGATGCCATGGTGGTGGAGAGGATTCTTGGATCTGGGTGGATTATGATCGGGTCGATTAATCGACCTCGATCGGACATAGAGACCGAATTCTCTATTGGCGACGACGACATCAAGGTGTGCTCGTTAGAGGTAGATGAAATGGGTGGTTGTCTTAGGCATGCAAATTGGGGTGATGGCAGATTTTGGTGCGAATTTGGTGGAAGTGGTCAACTACAAATGGGGTATGGTTCACCAACGTGGTTCAGAATTGGTGACACATTAACGGATCATGGAGCTGCATATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.83

Weight (kDa)

4.18

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	130, 366
AcsI	RAATTY	2 cut(s)	179, 284
AgsI	TTSAA	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AleI	CACNNNNGTG	1 cut(s)	328
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	22, 368
AluI	AGCT	2 cut(s)	22, 368
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	69, 167
AlwI	GGATC	2 cut(s)	130, 366
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	179, 284
AseI	ATTAAT	1 cut(s)	150
AsuHPI	GGTGA	4 cut(s)	56, 275, 315, 356
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	3 cut(s)	26, 65, 260
BcoDI	GTCTC	2 cut(s)	69, 167
BfaI	CTAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmsI	GCATC	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	355
Bsh1285I	CGRYCG	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	69, 167
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	4 cut(s)	122, 138, 161, 358
Bsp19I	CCATGG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	130, 366
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	4 cut(s)	122, 138, 161, 358
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	99
BstKTI	GATC	4 cut(s)	125, 141, 164, 361
BstMAI	GTCTC	2 cut(s)	69, 167
BstMBI	GATC	4 cut(s)	122, 138, 161, 358
BstMCI	CGRYCG	1 cut(s)	164
BstNSI	RCATGY	2 cut(s)	10, 254
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	252
CviAII	CATG	4 cut(s)	7, 100, 251, 362
CviJI	RGCY	2 cut(s)	22, 368
CviKI_1	RGCY	2 cut(s)	22, 368
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	4 cut(s)	124, 140, 163, 360
DpnII	GATC	4 cut(s)	122, 138, 161, 358
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	10, 103, 254, 365
FaiI	YATR	9 cut(s)	8, 101, 137, 170, 252, 318, 363, 373, 375
FatI	CATG	4 cut(s)	6, 99, 250, 361
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	1 cut(s)	369
Hin1II	CATG	4 cut(s)	10, 103, 254, 365
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	4 cut(s)	56, 275, 315, 356
Hpy166II	GTNNAC	3 cut(s)	85, 302, 323
Hpy188I	TCNGA	2 cut(s)	166, 338
Hpy8I	GTNNAC	3 cut(s)	85, 302, 323
Hpy99I	CGWCG	2 cut(s)	197, 200
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	254, 371
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	4 cut(s)	10, 103, 254, 365
Kzo9I	GATC	4 cut(s)	122, 138, 161, 358
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	379
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	124, 140, 163, 360
MboI	GATC	4 cut(s)	122, 138, 161, 358
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	4 cut(s)	179, 256, 284, 339
MnlI	CCTC	4 cut(s)	46, 105, 168, 214
MseI	TTAA	2 cut(s)	150, 353
MslI	CAYNNNNRTG	4 cut(s)	90, 104, 206, 328
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	4 cut(s)	122, 138, 161, 358
NlaIII	CATG	4 cut(s)	10, 103, 254, 365
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	2 cut(s)	10, 254
OliI	CACNNNNGTG	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	370
Ple19I	CGATCG	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	164
RseI	CAYNNNNRTG	4 cut(s)	90, 104, 206, 328
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	150, 353
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	122, 138, 161, 358
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	6 cut(s)	24, 160, 210, 225, 332, 370
SfaNI	GCATC	1 cut(s)	85
SmiMI	CAYNNNNRTG	4 cut(s)	90, 104, 206, 328
SphI	GCATGC	1 cut(s)	254
Sse9I	AATT	4 cut(s)	179, 256, 284, 339
SspMI	CTAG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	4 cut(s)	30, 146, 154, 160
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	179, 256, 284, 339
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	150, 353
Tru9I	TTAA	2 cut(s)	150, 353
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	2 cut(s)	179, 284
XceI	RCATGY	2 cut(s)	10, 254
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.