RLG00000032950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002407
Physical Location & Seq
Forward (+)
21301048 .. 21301735
688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032950

Sequence Viewer

Length: 441 bp
ATGATCTCCCAAAACCAAACCCAAGATGATCTCCAATCCAAGAATCCTCACCCGAATGCTCGACCCGTAATGCTCGACCTGAATTTGACCCTGGTGGAGACCCGGACACACCAGCACCGCCGACCAGGACTTTTGCTCGAACTCACACAGTCCCTTAGAGTTTTCCACAGTCACAATCGTATCAAACGACTTCTAATCGTTGAAATTGAATATGACGATCTTGTGGAGAAGAACAACTACGATTCGGTAGTGGTGGAGCTTGACCGACTTGACCTTGGACTGGAACGAGAGCTCACTGACGCAGCGGGACTAGCGATCTTTATAGATCATGACCTTGTTGGGAGGGCAGAACGAGGAAGCCGCCATTTGTTTTTGATCGGAGCAATGACGGGGGCTCTGGGGCCATGGTGGTGGAGGAAAGGATTCTTGGATCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.8

Weight (kDa)

5.94

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 118, 305, 361
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 203, 209
AjnI CCWGG 2 cut(s) 90, 124
AjuI GAANNNNNNNTTGG 1 cut(s) 410
AluBI AGCT 2 cut(s) 259, 292
AluI AGCT 2 cut(s) 259, 292
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 438
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 163, 196
BanII GRGCYC 2 cut(s) 294, 397
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 92, 126
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 311, 434
BisI GCNGC 2 cut(s) 303, 361
BlsI GCNGC 2 cut(s) 304, 362
Bme1390I CCNGG 3 cut(s) 92, 103, 126
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 3 cut(s) 92, 103, 126
BpuMI CCSGG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 90, 274, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 2 cut(s) 92, 126
BseDI CCNNGG 3 cut(s) 90, 274, 404
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 314
BshFI GGCC 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 2 cut(s) 136, 321
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 136, 321
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 1 cut(s) 403
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 294, 397
Bsp143I GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 3 cut(s) 118, 305, 361
BspANI GGCC 1 cut(s) 403
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 90, 274, 404
BssMI GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
BssT1I CCWWGG 2 cut(s) 274, 404
Bst2UI CCWGG 2 cut(s) 92, 126
Bst4CI ACNGT 2 cut(s) 150, 170
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 404
BstKTI GATC 7 cut(s) 6, 31, 220, 318, 328, 378, 433
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 92, 126
BstSCI CCNGG 3 cut(s) 90, 101, 124
BstV1I GCAGC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 411
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 403
BtgI CCRYGG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 294
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 308
CviAII CATG 2 cut(s) 329, 405
CviJI RGCY 5 cut(s) 259, 292, 360, 395, 403
CviKI_1 RGCY 5 cut(s) 259, 292, 360, 395, 403
DdeI CTNAG 1 cut(s) 155
DpnI GATC 7 cut(s) 5, 30, 219, 317, 327, 377, 432
DpnII GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 274, 404
Eco24I GRGCYC 2 cut(s) 294, 397
Eco31I GGTCTC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 90, 124
EcoT14I CCWWGG 2 cut(s) 274, 404
EcoT38I GRGCYC 2 cut(s) 294, 397
ErhI CCWWGG 2 cut(s) 274, 404
FaeI CATG 2 cut(s) 332, 408
FaiI YATR 4 cut(s) 213, 323, 330, 406
FaqI GGGAC 2 cut(s) 136, 321
FatI CATG 2 cut(s) 328, 404
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 303, 361
FriOI GRGCYC 2 cut(s) 294, 397
Fsp4HI GCNGC 2 cut(s) 303, 361
FspBI CTAG 2 cut(s) 311, 434
GluI GCNGC 2 cut(s) 303, 361
HaeIII GGCC 1 cut(s) 403
HapII CCGG 1 cut(s) 103
HgaI GACGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 332, 408
HinfI GANTC 3 cut(s) 43, 242, 423
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 150, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 2 cut(s) 332, 408
Kzo9I GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
LmnI GCTCC 2 cut(s) 256, 380
LpnPI CCDG 9 cut(s) 77, 92, 104, 111, 116, 125, 138, 266, 383
Lsp1109I GCAGC 1 cut(s) 314
MaeI CTAG 2 cut(s) 311, 434
MaeIII GTNAC 1 cut(s) 170
MalI GATC 7 cut(s) 5, 30, 219, 317, 327, 377, 432
MboI GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
MboII GAAGA 1 cut(s) 241
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 294, 397
MluCI AATT 2 cut(s) 82, 204
MnlI CCTC 4 cut(s) 57, 336, 347, 408
MroXI GAANNNNTTC 1 cut(s) 422
MslI CAYNNNNRTG 2 cut(s) 54, 409
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 3 cut(s) 92, 103, 126
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 2 cut(s) 92, 126
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 404
NdeII GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
NlaIII CATG 2 cut(s) 332, 408
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 170
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 43, 242, 423
PkrI GCNGC 2 cut(s) 304, 362
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 90, 124
PspGI CCWGG 2 cut(s) 90, 124
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 430
RseI CAYNNNNRTG 2 cut(s) 54, 409
SacI GAGCTC 1 cut(s) 294
SatI GCNGC 2 cut(s) 303, 361
Sau3AI GATC 7 cut(s) 3, 28, 217, 315, 325, 375, 430
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 92, 103, 126
SduI GDGCHC 2 cut(s) 294, 397
SetI ASST 6 cut(s) 81, 261, 276, 294, 336, 439
SmiMI CAYNNNNRTG 2 cut(s) 54, 409
Sse9I AATT 2 cut(s) 82, 204
SsiI CCGC 3 cut(s) 118, 305, 361
SspMI CTAG 2 cut(s) 311, 434
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 3 cut(s) 90, 101, 124
StyI CCWWGG 2 cut(s) 274, 404
TaaI ACNGT 2 cut(s) 150, 170
TaqI TCGA 3 cut(s) 61, 75, 138
TaqII GACCGA 1 cut(s) 279
TasI AATT 2 cut(s) 82, 204
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 3 cut(s) 43, 242, 423
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 170
TspRI CASTG 1 cut(s) 301
XapI RAATTY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 2 cut(s) 311, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.