Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

45864990 .. 45867585

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009065

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAAGCTTTCACCGAATCTTGGGTTTCTTCTTCAATCCAAGAAAAACCCAAAGGAGGAGGTATCGGTATCGACAGTAGCGATGGTGTGGCAAAGGTAAAACTGGTGGGAAGGAAGGCTTTATTGGCAAATGAGTTTAGATTATGTAGTTTTGATATGGGCTTGGATTATGCTAAGGGAATCAATGGAATTAGGAGTATAGATGGATATGGGATTGAGCAAAATGAAGCTGAAAGGGTGCTTGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGTTCTTTGTTCAAGGACAGTTCATTGAATTTCAGGATATTGATTTTTATTGTGTGATACTGTACAAATCGACAATTAGTGCTGCCTTCTTCTTGCAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGAGGAGCTGCTGCTGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

161

Amino Acids

17.53

Weight (kDa)

5.42

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	83 - 160	1.1e-16	Ras family
Roc	PF08477	83 - 160	4.6e-13	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	432, 445
AccB7I	CCANNNNNTGG	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	299, 398
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	2 cut(s)	335, 434
AfiI	CCNNNNNNNGG	3 cut(s)	21, 56, 442
AgsI	TTSAA	3 cut(s)	36, 284, 299
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	8, 230, 251, 467
AluI	AGCT	4 cut(s)	8, 230, 251, 467
ApeKI	GCWGC	4 cut(s)	353, 467, 470, 473
ApoI	RAATTY	2 cut(s)	299, 398
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BanI	GGYRCC	2 cut(s)	432, 445
BbvI	GCAGC	4 cut(s)	340, 454, 457, 460
BccI	CCATC	2 cut(s)	77, 197
BciVI	GTATCC	1 cut(s)	406
BfaI	CTAG	2 cut(s)	261, 266
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	4 cut(s)	354, 468, 471, 474
BlsI	GCNGC	4 cut(s)	355, 469, 472, 475
BmiI	GGNNCC	2 cut(s)	434, 447
Bpu10I	CCTNAGC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 56, 442
Bse1I	ACTGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	21, 56, 442
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	2 cut(s)	72, 477
BseXI	GCAGC	4 cut(s)	340, 454, 457, 460
BshNI	GGYRCC	2 cut(s)	432, 445
BslI	CCNNNNNNNGG	3 cut(s)	21, 56, 442
Bsp1407I	TGTACA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	434, 447
BspMI	ACCTGC	1 cut(s)	410
BspT107I	GGYRCC	2 cut(s)	432, 445
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	446
Bst4CI	ACNGT	4 cut(s)	77, 291, 333, 394
BstACI	GRCGYC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 473
BstV1I	GCAGC	4 cut(s)	340, 454, 457, 460
BsuI	GTATCC	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	410
CfoI	GCGC	1 cut(s)	448
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	334, 433
CviJI	RGCY	7 cut(s)	8, 119, 162, 230, 251, 377, 467
CviKI_1	RGCY	7 cut(s)	8, 119, 162, 230, 251, 377, 467
CviQI	GTAC	2 cut(s)	334, 433
DdeI	CTNAG	1 cut(s)	174
DinI	GGCGCC	1 cut(s)	447
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
FaiI	YATR	8 cut(s)	145, 158, 171, 200, 210, 438, 459, 481
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
Fnu4HI	GCNGC	4 cut(s)	354, 468, 471, 474
Fsp4HI	GCNGC	4 cut(s)	354, 468, 471, 474
FspBI	CTAG	2 cut(s)	261, 266
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	354, 468, 471, 474
HaeII	RGCGCY	1 cut(s)	449
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	2 cut(s)	17, 180
HphI	GGTGA	1 cut(s)	4
Hpy188III	TCNNGA	2 cut(s)	305, 425
HpyAV	CCTTC	3 cut(s)	105, 109, 367
HpyCH4III	ACNGT	4 cut(s)	77, 291, 333, 394
HpyCH4V	TGCA	2 cut(s)	367, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 473
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	446
HspAI	GCGC	1 cut(s)	446
KasI	GGCGCC	1 cut(s)	445
KpnI	GGTACC	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	248, 464
LpnPI	CCDG	4 cut(s)	89, 237, 290, 405
Lsp1109I	GCAGC	4 cut(s)	340, 454, 457, 460
MaeI	CTAG	2 cut(s)	261, 266
MboII	GAAGA	3 cut(s)	21, 24, 352
MluCI	AATT	4 cut(s)	189, 299, 345, 398
Mly113I	GGCGCC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	50, 53, 423, 455
MroXI	GAANNNNTTC	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	125, 473
NarI	GGCGCC	1 cut(s)	446
NlaIV	GGNNCC	2 cut(s)	434, 447
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	17, 180
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	355, 469, 472, 475
PluTI	GGCGCC	1 cut(s)	449
PspN4I	GGNNCC	2 cut(s)	434, 447
RsaI	GTAC	2 cut(s)	335, 434
RsaNI	GTAC	2 cut(s)	334, 433
SatI	GCNGC	4 cut(s)	354, 468, 471, 474
SetI	ASST	8 cut(s)	10, 64, 99, 232, 253, 424, 434, 469
SfoI	GGCGCC	1 cut(s)	447
Sse9I	AATT	4 cut(s)	189, 299, 345, 398
SspDI	GGCGCC	1 cut(s)	445
SspMI	CTAG	2 cut(s)	261, 266
TaaI	ACNGT	4 cut(s)	77, 291, 333, 394
TaqI	TCGA	2 cut(s)	72, 341
TasI	AATT	4 cut(s)	189, 299, 345, 398
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	17, 180
TseI	GCWGC	4 cut(s)	353, 467, 470, 473
TspDTI	ATGAA	3 cut(s)	17, 240, 283
Van91I	CCANNNNNTGG	1 cut(s)	442
XapI	RAATTY	2 cut(s)	299, 398
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	261, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.