Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

37819330 .. 37819990

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG200700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTAAGAGTTGCTGTGGGGGTGTTGCTATTAAAGCTCTGGTGACAATGTGTCGAATGTCACAACTGAAAAATACTGCCAGTCTTGCTGTTGTAAGCTTTGGAAAGAAAGGCAACATAAGGTTGCTCCATGACTTTGATCAGCCCTTTACTGGAGACGCTGAAGTTAAGATGATCTTTGACACAGCAGTTGCAAGAGCAAGATTGCCGTCCGGACGGAATCCATTACAGCAGCTTGTTTTGATAATTGCAGATGGTCATTTACATGAGAAGGAGAGGTTGAAACATTGTTTGAGGAATGCCTTGGCTAAGAACCGGATGGTTGCATTTTTGCTTGTTGATAACCCACAGATTCCACAGAATTCCATGACGAACAACACCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

9.74

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	283
AhdI	GACNNNNNGTC	1 cut(s)	51
AluBI	AGCT	3 cut(s)	38, 99, 235
AluI	AGCT	3 cut(s)	38, 99, 235
Alw26I	GTCTC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	248, 313
BceAI	ACGGC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	150
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
BmeRI	GACNNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	2 cut(s)	212, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	81, 157
BseAI	TCCGGA	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	81, 157
BseXI	GCAGC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	213, 316
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	150
BsmBI	CGTCTC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	139, 174
BspEI	TCCGGA	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	81, 157
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	139, 174
BssT1I	CCWWGG	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	6, 309
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	142, 177
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	139, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 86
BstV1I	GCAGC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	324
CseI	GACGC	1 cut(s)	167
CviAII	CATG	3 cut(s)	131, 266, 367
CviJI	RGCY	5 cut(s)	38, 99, 145, 235, 308
CviKI_1	RGCY	5 cut(s)	38, 99, 145, 235, 308
DdeI	CTNAG	2 cut(s)	6, 309
DpnI	GATC	2 cut(s)	141, 176
DpnII	GATC	2 cut(s)	139, 174
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	134, 269, 370
FaiI	YATR	4 cut(s)	119, 132, 267, 368
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	3 cut(s)	130, 265, 366
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	174
HapII	CCGG	2 cut(s)	213, 316
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	134, 269, 370
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	2 cut(s)	220, 352
HpaII	CCGG	2 cut(s)	213, 316
HphI	GGTGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	194, 251, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 86
HpyF3I	CTNAG	2 cut(s)	6, 309
Hsp92II	CATG	3 cut(s)	134, 269, 370
Kpn2I	TCCGGA	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	139, 174
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	26, 94, 138, 226, 329
Lsp1109I	GCAGC	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	43, 60
MalI	GATC	2 cut(s)	141, 176
MboI	GATC	2 cut(s)	139, 174
MluCI	AATT	2 cut(s)	246, 361
MnlI	CCTC	2 cut(s)	270, 288
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	3 cut(s)	33, 168, 385
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	213, 316
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	35, 86
NdeII	GATC	2 cut(s)	139, 174
NlaIII	CATG	3 cut(s)	134, 269, 370
NmuCI	GTSAC	2 cut(s)	43, 60
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	220, 352
PkrI	GCNGC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	33, 168, 385
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	139, 174
SetI	ASST	6 cut(s)	40, 101, 125, 237, 281, 383
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	246, 361
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	246, 361
TfiI	GAWTC	2 cut(s)	220, 352
Tru1I	TTAA	3 cut(s)	33, 168, 385
Tru9I	TTAA	3 cut(s)	33, 168, 385
TseFI	GTSAC	2 cut(s)	43, 60
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	2 cut(s)	43, 60
TspGWI	ACGGA	1 cut(s)	232
XapI	RAATTY	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.