RLG00000014254

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002407
Physical Location & Seq
Forward (+)
50089494 .. 50089808
315 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014254

Sequence Viewer

Length: 315 bp
ATGTCTCCAGCTCGATCAATCTTGATGATGGTCCACAGACAAGATGCTTTGGATGAGATGTCCAGTAATGAAGTCGAAGAGAGCACTAGAGCTAGTTCTGAAGCTAACGGCAACATTAATGTTGTACAACCCAATCTTAATGAAGCCCGATTTGATGATAGCCTCCACAAGCAGCGGTATGCAGCAAATGGCCAAAAGGAGAAACTTGATGAGAGTGATACTCAAGGGATGCCTGATGACTTCGACATGTATTACTTTGAGGAGTTAGCCTTACCAAGTTATGGGGAGTCCAACTTGACCAGGCAATTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

4.37

Isoelectric Point (pI)

71.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 246
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 3 cut(s) 11, 92, 104
AluI AGCT 3 cut(s) 11, 92, 104
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 172, 182
AseI ATTAAT 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 184, 194
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 87, 93
BisI GCNGC 2 cut(s) 173, 183
BlsI GCNGC 2 cut(s) 174, 184
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 2 cut(s) 34, 219
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpuEI CTTGAG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 58, 234
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 184, 194
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 175
BspANI GGCC 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 1 cut(s) 63
BssMI GATC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 124
BstF5I GGATG 2 cut(s) 58, 234
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 184, 194
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 58, 234
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 125
CviAII CATG 1 cut(s) 247
CviJI RGCY 7 cut(s) 11, 92, 104, 146, 162, 192, 269
CviKI_1 RGCY 7 cut(s) 11, 92, 104, 146, 162, 192, 269
CviQI GTAC 1 cut(s) 125
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 299
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 180, 248, 282
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 173, 183
FokI GGATG 2 cut(s) 65, 241
Fsp4HI GCNGC 2 cut(s) 173, 183
FspBI CTAG 2 cut(s) 87, 93
GluI GCNGC 2 cut(s) 173, 183
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 1 cut(s) 250
HinfI GANTC 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 182
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 21, 76, 246, 286
Lsp1109I GCAGC 2 cut(s) 184, 194
LweI GCATC 2 cut(s) 34, 219
MaeI CTAG 2 cut(s) 87, 93
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 1 cut(s) 305
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 2 cut(s) 173, 253
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 117, 138
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
NdeII GATC 1 cut(s) 14
NlaIII CATG 1 cut(s) 250
NspI RCATGY 1 cut(s) 250
PciI ACATGT 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 2 cut(s) 174, 184
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PscI ACATGT 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspPI GGNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 117, 138
SatI GCNGC 2 cut(s) 173, 183
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 86
SetI ASST 3 cut(s) 13, 94, 106
SfaNI GCATC 2 cut(s) 34, 219
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 1 cut(s) 305
SsiI CCGC 1 cut(s) 175
SspMI CTAG 2 cut(s) 87, 93
StyD4I CCNGG 1 cut(s) 299
TaqI TCGA 3 cut(s) 13, 75, 243
TasI AATT 1 cut(s) 305
TatI WGTACW 1 cut(s) 124
Tru1I TTAA 2 cut(s) 117, 138
Tru9I TTAA 2 cut(s) 117, 138
TseI GCWGC 2 cut(s) 172, 182
TspDTI ATGAA 2 cut(s) 84, 156
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 31
VspI ATTAAT 1 cut(s) 117
XceI RCATGY 1 cut(s) 250
XspI CTAG 2 cut(s) 87, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.