Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

43311492 .. 43312066

Gene Structure 575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGCGGGGACAATGACGACCGCCGCCGGAGCTGCTGTGATTATAATCCTCACCCGAATGCTCGACCCGAATTTGACCTTGGTGGAGCCCCAGACACGCCAGCACCGCCGGCCCGAACTTTTGCTCTACCTCACCCAGTCCCTTAGGGTTTTCCACGGTCACAATCGTATCAAACAGCTTCTAATCTTTGAAATTGAAGATGACGATCTTGTGGAGAAGAACAACTACGATTCGGTCGCGGTGGAGCTTGACCGACTTGACCTCATACCGGAACGAGCGCTCACTGACGTGGCCGGAATGGCGATCTTCATTAATCATGACCTTGTTGGAGGGGCAGAACAAGGAAGCCGCCATTTGTTTTTGATCGGAGCAATGACGGGGGCTTTGGGGCCATGGTGGTGGAGGAGAGGATTCTTGGATCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.03

Weight (kDa)

5.44

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AccII	CGCG	1 cut(s)	242
AciI	CCGC	7 cut(s)	5, 8, 24, 27, 109, 242, 352
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	73
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	194, 200
AjiI	CACGTC	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	3 cut(s)	35, 181, 250
AluI	AGCT	3 cut(s)	35, 181, 250
AlwI	GGATC	1 cut(s)	429
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	3 cut(s)	113, 294, 392
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	114, 392
AsuHPI	GGTGA	2 cut(s)	46, 127
AxyI	CCTNAGG	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BanII	GRGCYC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbvI	GCAGC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	4 cut(s)	6, 27, 36, 352
BlsI	GCNGC	4 cut(s)	7, 28, 37, 353
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	114, 392
BmiI	GGNNCC	2 cut(s)	90, 393
BmrI	ACTGGG	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	133
BsaBI	GATNNNNATC	2 cut(s)	47, 207
BsaJI	CCNNGG	3 cut(s)	81, 157, 395
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	2 cut(s)	47, 207
BseDI	CCNNGG	3 cut(s)	81, 157, 395
BseJI	GATNNNNATC	2 cut(s)	47, 207
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	2 cut(s)	24, 240
BshFI	GGCC	3 cut(s)	115, 296, 394
BsiEI	CGRYCG	2 cut(s)	24, 240
BsiSI	CCGG	4 cut(s)	30, 112, 272, 297
BslFI	GGGAC	2 cut(s)	25, 127
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	25, 127
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	115, 296, 394
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	208, 306, 366, 421
Bsp19I	CCATGG	1 cut(s)	395
BspACI	CCGC	7 cut(s)	5, 8, 24, 27, 109, 242, 352
BspANI	GGCC	3 cut(s)	115, 296, 394
BspFNI	CGCG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	90, 393
BspPI	GGATC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	3 cut(s)	81, 157, 395
BssMI	GATC	4 cut(s)	208, 306, 366, 421
BssT1I	CCWWGG	2 cut(s)	81, 395
Bst4CI	ACNGT	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	104, 113
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	2 cut(s)	157, 395
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	211, 309, 369, 424
BstMBI	GATC	4 cut(s)	208, 306, 366, 421
BstMCI	CGRYCG	2 cut(s)	24, 240
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 35, 108, 112, 302
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	115, 296, 394
BtgI	CCRYGG	2 cut(s)	157, 395
BtrI	CACGTC	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	104, 113
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	114, 392
CviAII	CATG	2 cut(s)	320, 396
CviJI	RGCY	9 cut(s)	35, 91, 115, 181, 250, 296, 351, 386, 394
CviKI_1	RGCY	9 cut(s)	35, 91, 115, 181, 250, 296, 351, 386, 394
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	4 cut(s)	210, 308, 368, 423
DpnII	GATC	4 cut(s)	208, 306, 366, 421
EaeI	YGGCCR	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	81, 395
Eco24I	GRGCYC	1 cut(s)	93
Eco47III	AGCGCT	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	81, 395
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	81, 395
FaeI	CATG	2 cut(s)	323, 399
FaiI	YATR	4 cut(s)	47, 269, 321, 397
FaqI	GGGAC	2 cut(s)	25, 127
FatI	CATG	2 cut(s)	319, 395
Fnu4HI	GCNGC	4 cut(s)	6, 27, 36, 352
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	6, 27, 36, 352
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	4 cut(s)	6, 27, 36, 352
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	115, 296, 394
HapII	CCGG	4 cut(s)	30, 112, 272, 297
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	323, 399
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	2 cut(s)	233, 414
HpaII	CCGG	4 cut(s)	30, 112, 272, 297
HphI	GGTGA	2 cut(s)	46, 127
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 35, 108, 112, 302
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	323, 399
HspAI	GCGC	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Kzo9I	GATC	4 cut(s)	208, 306, 366, 421
LmnI	GCTCC	4 cut(s)	32, 88, 247, 371
LpnPI	CCDG	8 cut(s)	43, 107, 116, 125, 152, 285, 310, 410
Lsp1109I	GCAGC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	4 cut(s)	210, 308, 368, 423
MboI	GATC	4 cut(s)	208, 306, 366, 421
MboII	GAAGA	3 cut(s)	212, 232, 301
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	73, 195
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	62, 143, 275, 326, 399, 404
MroNI	GCCGGC	1 cut(s)	111
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	3 cut(s)	59, 290, 400
MspI	CCGG	4 cut(s)	30, 112, 272, 297
Mva1269I	GAATGC	1 cut(s)	66
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	32, 35, 108, 112, 302
NaeI	GCCGGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	4 cut(s)	208, 306, 366, 421
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	323, 399
NlaIV	GGNNCC	2 cut(s)	90, 393
NmuCI	GTSAC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	319
PctI	GAATGC	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	233, 414
PkrI	GCNGC	4 cut(s)	7, 28, 37, 353
PshBI	ATTAAT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	90, 393
PspPI	GGNCC	2 cut(s)	114, 392
PsuI	RGATCY	1 cut(s)	421
RseI	CAYNNNNRTG	3 cut(s)	59, 290, 400
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	6, 27, 36, 352
Sau3AI	GATC	4 cut(s)	208, 306, 366, 421
Sau96I	GGNCC	2 cut(s)	114, 392
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	8 cut(s)	37, 83, 135, 183, 252, 267, 294, 327
SmiMI	CAYNNNNRTG	3 cut(s)	59, 290, 400
Sse9I	AATT	2 cut(s)	73, 195
SsiI	CCGC	7 cut(s)	5, 8, 24, 27, 109, 242, 352
StyI	CCWWGG	2 cut(s)	81, 395
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	66
TaqII	GACCGA	2 cut(s)	226, 270
TasI	AATT	2 cut(s)	73, 195
TauI	GCSGC	3 cut(s)	8, 29, 354
TfiI	GAWTC	2 cut(s)	233, 414
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.