Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

63542627 .. 63544000

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCGAGACCTCACACAGTCCCTTAGGGTTTTCCAAGGTCACAATCATATCAAACGGCTTCTAATCGTTGAAATTGAAGACGACGATCTTGTGAAAAAGAACAACTACGATTTGGTCGCGGTGGAGGCTGATCGACTTGACCTTGAACCGGAACAAGCGCTTACTGACGCAGCAGGACTGGCGATCTTCATAGATCATGTCCTTGTTGGGCGGGCAGAACGAGGAAGCCGCCATTTGTTTTTGATCGGAGCAAGGACAGGGGCTCTAAGGCCATGGTGGTGGAGGAGAGAATTCTTGGATCTGGGTGGATTAAGATCGGGTCAGATTGATCGACCCGGATCAGACACACATACTGGATTCTCTATTAGCGGCGACAAGCAAGAGGTGTGCTCGTTAGAGGCAAATGGCTTGGCCATACAGATTGGGACCAATACTCCCGGTGCTAAAATCATGGAACTACCCCTCTTCCCTCCCCTACACATATCACAAACCCATACGTGGCACGGCGGCACTACGCGTCCGCTCGTCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.74

Weight (kDa)

5.89

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	523
AccII	CGCG	2 cut(s)	119, 517
AciI	CCGC	6 cut(s)	119, 211, 229, 369, 507, 521
AclWI	GGATC	2 cut(s)	306, 346
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	148, 498
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	71, 77, 146
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	306, 346
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	2 cut(s)	269, 411
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	2 cut(s)	336, 438
AvaII	GGWCC	1 cut(s)	426
AxyI	CCTNAGG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	71, 520
BcnI	CCSGG	2 cut(s)	336, 438
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	4 cut(s)	171, 229, 370, 508
BlsI	GCNGC	4 cut(s)	172, 230, 371, 509
Bme1390I	CCNGG	2 cut(s)	336, 438
Bme18I	GGWCC	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	336, 438
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuMI	CCSGG	2 cut(s)	336, 438
BsaAI	YACGTR	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	34, 272
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 498
Bse1I	ACTGG	2 cut(s)	183, 358
Bse21I	CCTNAGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	34, 272
BseJI	GATNNNNATC	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	148, 498
BseNI	ACTGG	2 cut(s)	183, 358
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	2 cut(s)	119, 517
BshFI	GGCC	2 cut(s)	271, 413
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	149, 336, 438
BslFI	GGGAC	2 cut(s)	4, 439
BslI	CCNNNNNNNGG	2 cut(s)	148, 498
BsmFI	GGGAC	2 cut(s)	4, 439
BsnI	GGCC	2 cut(s)	271, 413
Bsp1286I	GDGCHC	2 cut(s)	265, 392
Bsp143I	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	6 cut(s)	119, 211, 229, 369, 507, 521
BspANI	GGCC	2 cut(s)	271, 413
BspFNI	CGCG	2 cut(s)	119, 517
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	2 cut(s)	306, 346
BsrBI	CCGCTC	1 cut(s)	523
BsrI	ACTGG	2 cut(s)	183, 358
BssECI	CCNNGG	2 cut(s)	34, 272
BssMI	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
BssT1I	CCWWGG	2 cut(s)	34, 272
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	23, 266
BstDSI	CCRYGG	1 cut(s)	272
BstFNI	CGCG	2 cut(s)	119, 517
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	9 cut(s)	88, 133, 186, 196, 246, 301, 317, 331, 341
BstMBI	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 179
BstSCI	CCNGG	2 cut(s)	334, 436
BstUI	CGCG	2 cut(s)	119, 517
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	298
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	271, 413
BtgI	CCRYGG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	2 cut(s)	176, 506
CviAII	CATG	3 cut(s)	197, 273, 451
CviJI	RGCY	7 cut(s)	58, 128, 228, 263, 271, 408, 413
CviKI_1	RGCY	7 cut(s)	58, 128, 228, 263, 271, 408, 413
DdeI	CTNAG	2 cut(s)	23, 266
DpnI	GATC	9 cut(s)	87, 132, 185, 195, 245, 300, 316, 330, 340
DpnII	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	34, 272
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	426
Eco47III	AGCGCT	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	34, 272
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	34, 272
FaeI	CATG	3 cut(s)	200, 276, 454
FaiI	YATR	9 cut(s)	48, 191, 198, 274, 351, 416, 452, 482, 495
FaqI	GGGAC	2 cut(s)	4, 439
FatI	CATG	3 cut(s)	196, 272, 450
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	171, 229, 370, 508
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	4 cut(s)	171, 229, 370, 508
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	4 cut(s)	171, 229, 370, 508
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	271, 413
HapII	CCGG	3 cut(s)	149, 336, 438
HgaI	GACGC	2 cut(s)	176, 506
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	200, 276, 454
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	3 cut(s)	149, 336, 438
Hpy188I	TCNGA	3 cut(s)	248, 324, 343
Hpy99I	CGWCG	2 cut(s)	86, 530
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 179
HpyF3I	CTNAG	2 cut(s)	23, 266
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	3 cut(s)	200, 276, 454
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	159, 162, 164, 243, 287, 339, 349, 451
Lsp1109I	GCAGC	1 cut(s)	182
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	9 cut(s)	87, 132, 185, 195, 245, 300, 316, 330, 340
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
MboII	GAAGA	3 cut(s)	89, 178, 457
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	265, 392
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	2 cut(s)	72, 290
MluI	ACGCGT	1 cut(s)	515
MluNI	TGGCCA	1 cut(s)	413
MnlI	CCTC	8 cut(s)	20, 118, 215, 276, 376, 391, 473, 480
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	3 cut(s)	149, 336, 438
MspR9I	CCNGG	2 cut(s)	336, 438
MvnI	CGCG	2 cut(s)	119, 517
MwoI	GCNNNNNNNGC	2 cut(s)	125, 179
NciI	CCSGG	2 cut(s)	336, 438
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
NlaIII	CATG	3 cut(s)	200, 276, 454
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	172, 230, 371, 509
Ppu21I	YACGTR	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	4 cut(s)	171, 229, 370, 508
Sau3AI	GATC	9 cut(s)	85, 130, 183, 193, 243, 298, 314, 328, 338
Sau96I	GGNCC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	336, 438
SduI	GDGCHC	2 cut(s)	265, 392
SetI	ASST	5 cut(s)	12, 40, 144, 387, 500
SinI	GGWCC	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	72, 290
SsiI	CCGC	6 cut(s)	119, 211, 229, 369, 507, 521
StyD4I	CCNGG	2 cut(s)	334, 436
StyI	CCWWGG	2 cut(s)	34, 272
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	3 cut(s)	133, 331, 528
TasI	AATT	2 cut(s)	72, 290
TauI	GCSGC	3 cut(s)	231, 372, 510
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.