Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

50262903 .. 50264675

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009288

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTTGACCAGAATTTGACCTTGGTGGAGCCCCAGACACGCCAGCACTGCCGGCCCGAACTTTTGCTCGACCTCACACAGTCCCTTAGGGTTTTCCACGGTCACAATCGTATCAAACAGCTTCTAATCTTTGAAATTGAAGACGATGATCTTGTAGAGAAGAACAACTACGATTCGGTGATACCCTACATAACAAGTGAGTACCAGAAAGATAAAATATGGCCAAGACGGACCCGGCCTAACAAACGTGATTATCAAGTTGTTATTGTTGTTGATGATTCCCGCAGTATGTCTGAGAGTTGCTGTGGGGATGTTGCCATTGAAGCTCTGGTGACAGTGTGTCATGCAATGTCACAACTAGAAAATACTAGCAACCTTGCTGTTGCAAGCTTTGGAAAGAAAGGCAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

138

Amino Acids

15.76

Weight (kDa)

5.78

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	134, 140, 323
AhdI	GACNNNNNGTC	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	121, 326, 390
AluI	AGCT	3 cut(s)	121, 326, 390
AoxI	GGCC	3 cut(s)	53, 221, 236
ApoI	RAATTY	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	54, 231
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	190, 343
AvaII	GGWCC	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	94, 127
BalI	TGGCCA	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	2 cut(s)	359, 369
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	231
BmeRI	GACNNNNNGTC	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	54, 231
BmiI	GGNNCC	2 cut(s)	30, 233
BmrFI	CCNGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	21, 97
Bse118I	RCCGGY	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	21, 97
BseGI	GGATG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	55, 223, 238
BsiSI	CCGG	2 cut(s)	52, 235
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	55, 223, 238
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	3 cut(s)	55, 223, 238
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	30, 233
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	21, 97
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	81, 101, 337
BstC8I	GCNNGC	3 cut(s)	44, 53, 388
BstDEI	CTNAG	2 cut(s)	86, 294
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 52, 323
BstSCI	CCNGG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	55, 223, 238
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 342
Cac8I	GCNNGC	3 cut(s)	44, 53, 388
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	54, 231
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	7 cut(s)	31, 55, 121, 223, 238, 326, 390
CviKI_1	RGCY	7 cut(s)	31, 55, 121, 223, 238, 326, 390
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	86, 294
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DriI	GACNNNNNGTC	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	221
Eam1105I	GACNNNNNGTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	347
FaiI	YATR	5 cut(s)	191, 220, 290, 345, 412
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	359, 369
HaeIII	GGCC	3 cut(s)	55, 223, 238
HapII	CCGG	2 cut(s)	52, 235
Hin1II	CATG	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	2 cut(s)	173, 278
HpaII	CCGG	2 cut(s)	52, 235
HphI	GGTGA	2 cut(s)	190, 343
Hpy188I	TCNGA	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	81, 101, 337
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	347, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 52, 323
HpyF3I	CTNAG	2 cut(s)	86, 294
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	23, 47, 56, 65, 218, 248, 314
MaeI	CTAG	2 cut(s)	359, 369
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	101, 331, 351
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	152, 172
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	2 cut(s)	13, 135
MluNI	TGGCCA	1 cut(s)	223
MnlI	CCTC	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	223
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	2 cut(s)	52, 235
MspR9I	CCNGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	48, 52, 323
NaeI	GCCGGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	148
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	2 cut(s)	30, 233
NmuCI	GTSAC	3 cut(s)	101, 331, 351
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	173, 278
PspN4I	GGNNCC	2 cut(s)	30, 233
PspPI	GGNCC	2 cut(s)	54, 231
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	54, 231
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	7 cut(s)	23, 75, 123, 250, 328, 378, 392
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	2 cut(s)	13, 135
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	2 cut(s)	359, 369
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	81, 101, 337
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	13, 135
TfiI	GAWTC	2 cut(s)	173, 278
TscAI	CASTG	2 cut(s)	53, 342
TseFI	GTSAC	3 cut(s)	101, 331, 351
Tsp45I	GTSAC	3 cut(s)	101, 331, 351
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	53, 342
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	2 cut(s)	359, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.