Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

10879556 .. 10884737

Gene Structure 5182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTTACAAAGAACGTCAAGGGCAGACAATCTTGAGGTGATACCCTACATAGCAAGTGAGTACCAGAAAGATAAAATATGGCCAAGACGGACTCAGCCTAACAAACGTGATTATCAAGTTGTTATTGCTGTTAATGATTCCCACAGTATGTCTGAGAGTTGTTGTGGGGATGTTGCCATTGAAGCTCTGGTGACAGTGTGTAGTGCAATGTCACAACTAGAAAATATTGGCAACCTTGTTGTTGCAAGCTTTGGAAAGAAAGGCAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

90

Amino Acids

10.01

Weight (kDa)

7.7

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	80
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	2 cut(s)	185, 249
AluI	AGCT	2 cut(s)	185, 249
AoxI	GGCC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	49, 202
BalI	TGGCCA	1 cut(s)	82
BfaI	CTAG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	107, 144
BshFI	GGCC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	106, 145
BsrDI	GCAATG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	146, 196
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	93, 153
BstF5I	GGATG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	4 cut(s)	82, 97, 185, 249
CviKI_1	RGCY	4 cut(s)	82, 97, 185, 249
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	93, 153
EaeI	YGGCCR	1 cut(s)	80
FaiI	YATR	4 cut(s)	50, 79, 149, 271
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	91, 137
HphI	GGTGA	2 cut(s)	49, 202
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	146, 196
HpyCH4IV	ACGT	2 cut(s)	14, 106
HpyCH4V	TGCA	2 cut(s)	206, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	93, 153
HpySE526I	ACGT	2 cut(s)	14, 106
LpnPI	CCDG	2 cut(s)	77, 173
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	2 cut(s)	14, 106
MaeIII	GTNAC	3 cut(s)	3, 190, 210
MlsI	TGGCCA	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	1 cut(s)	28
Mox20I	TGGCCA	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	82
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	190, 210
PfeI	GAWTC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	132
SchI	GAGTC	1 cut(s)	85
SetI	ASST	6 cut(s)	17, 39, 109, 187, 237, 251
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	146, 196
TaiI	ACGT	2 cut(s)	17, 109
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	190, 210
Tsp45I	GTSAC	2 cut(s)	190, 210
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.