Rmu_sc0000556.1_g000056

Protein SGT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000556.1
OG0001767
Physical Location & Seq
Reverse (-)
296619 .. 302925
6307 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1503 bp
atgaagaccatcaagtacatacatgaacgctatcttcttcatctgggtttaaaaaaaagaagtagctacgccctaattaatgacaagaagaatggtttcaaaatcaaaatcctctttgatcgtaattcatcgactgagaattcggtgtacgacataaaaaaggcaaagttggatgattggaaagattataaggacgtgctggagtttctgttgaagtcattgccacaaacggatgacctaaagttgtttctaaattattttggtctggaccaaaaagggaaatatgatgtattcgttgatcgactcattgcacatccttttctcttgtgtgctgaagaaaacatgaattttattgcaaacgtacagcatgccattattacccaaaggatcagttttttaagtggtgaaaaattcaaagagtatgagaattgggatgagaaacttgatgattggctgaaaggaagttcctctggaatgaatttgagatgtgcacaaggccagaggttatccctgcaaatgcagaggaagttcctctggaatgaatttgagatgtgcacaaggccagaggttatccctgcaaatgcagggttaagtgtcagcattgatgttcctggagaagagacatatcattttcagcctcgcctgtttggaaaggtattgcatctatttgtggtgctgaggaatcttcttaatttgttaagatatcatgtatatctagagaattctttggagtaccctttccaatttgatgttttgtctaccaaagttgacattcgcctggccaaagctgaacctatacattcaagagatgtccagttcagcaaggataaccctgttccactaaaggttaatgccccagttattggcgtccaaaggccatcttacccatcctccaaaccaaaatgggtagattgggacaagcttgaagcccaagaaaaagatgagaagcttgatggtgatgcagctttgaacaaatttttccaagacatattcaaggatgctgatgaggacacaagaagggccatgagaaaatcttttgtggagttgaacggaacggtgctttcgacaatctggaaaaaagtgggcaccaagaaggtcgaggaaagtgctcctgatggtatggagatgaggaaatgggagtaccaagagctcaagttggacaggtttcgttttgctagtggtggtgcagcttcgctccccggaccaggcaaggctgcagcgcgctcccaggtggtgtgcgacgatggtgcggtggtgggtgtggagtttttctggattgtggcttctgggagcttgttccaaactttggcggtggcagattgtgggcattccggccggactctaagaggacccagtgatggtggaggagagatggaggtcgccggaaaggtgaatggcggggctaccttccgggaaggcaggtctagttcgaccggtgtgaggaagttggattttggtagtgggcttgggcctctgccttactgggttgtggttgcagcctag

Protein Analysis

500

Amino Acids

56.7

Weight (kDa)

8.51

Isoelectric Point (pI)

24.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGS PF05002 304 - 379 4.5e-29 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 1410
AccB1I GGYRCC 1 cut(s) 1085
AccB7I CCANNNNNTGG 2 cut(s) 863, 1306
AccI GTMKAC 1 cut(s) 758
AccII CGCG 1 cut(s) 1222
AciI CCGC 3 cut(s) 1250, 1310, 1398
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 2 cut(s) 780, 1333
AcsI RAATTY 7 cut(s) 139, 346, 410, 478, 542, 721, 974
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 867
AfaI GTAC 5 cut(s) 17, 149, 363, 734, 1142
AfiI CCNNNNNNNGG 5 cut(s) 863, 1205, 1306, 1358, 1440
AgeI ACCGGT 1 cut(s) 1433
AgsI TTSAA 8 cut(s) 100, 214, 415, 804, 926, 970, 994, 1048
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 4 cut(s) 610, 777, 1204, 1227
AluBI AGCT 8 cut(s) 66, 788, 922, 949, 965, 1150, 1190, 1293
AluI AGCT 8 cut(s) 66, 788, 922, 949, 965, 1150, 1190, 1293
Alw21I GWGCWC 4 cut(s) 493, 557, 1111, 1152
Alw26I GTCTC 1 cut(s) 614
Alw44I GTGCAC 2 cut(s) 489, 553
AlwI GGATC 1 cut(s) 395
AoxI GGCC 7 cut(s) 496, 560, 780, 875, 1020, 1333, 1469
ApaLI GTGCAC 2 cut(s) 489, 553
ApeKI GCWGC 5 cut(s) 962, 1187, 1214, 1217, 1496
ApoI RAATTY 7 cut(s) 139, 346, 410, 478, 542, 721, 974
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AseI ATTAAT 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 1433
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 1222, 1224
AspS9I GGNCC 5 cut(s) 268, 1020, 1202, 1349, 1469
AsuC2I CCSGG 2 cut(s) 1200, 1412
AsuHPI GGTGA 3 cut(s) 416, 968, 1402
AvaII GGWCC 3 cut(s) 268, 1202, 1349
BaeGI GKGCMC 3 cut(s) 493, 557, 1088
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 1 cut(s) 1085
BanII GRGCYC 1 cut(s) 1152
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 4 cut(s) 493, 557, 1111, 1152
BbvCI CCTCAGC 1 cut(s) 677
BbvI GCAGC 4 cut(s) 974, 1199, 1201, 1229
BccI CCATC 8 cut(s) 17, 886, 895, 947, 1109, 1238, 1352, 1366
BcgI CGANNNNNNTGC 4 cut(s) 1088, 1122, 1229, 1263
BciT130I CCWGG 4 cut(s) 612, 779, 1206, 1229
BcnI CCSGG 2 cut(s) 1200, 1412
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 4 cut(s) 716, 1176, 1425, 1501
BfmI CTRYAG 1 cut(s) 1215
BfuAI ACCTGC 1 cut(s) 1410
BisI GCNGC 5 cut(s) 963, 1188, 1215, 1218, 1497
BlsI GCNGC 5 cut(s) 964, 1189, 1216, 1219, 1498
Bme1390I CCNGG 6 cut(s) 612, 779, 1200, 1206, 1229, 1412
Bme18I GGWCC 3 cut(s) 268, 1202, 1349
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 5 cut(s) 268, 1020, 1202, 1349, 1469
BmiI GGNNCC 2 cut(s) 1087, 1351
BmrFI CCNGG 6 cut(s) 612, 779, 1200, 1206, 1229, 1412
BmrI ACTGGG 3 cut(s) 851, 1347, 1492
BmsI GCATC 3 cut(s) 670, 949, 988
BmuI ACTGGG 3 cut(s) 851, 1347, 1492
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 2 cut(s) 221, 633
Bpu10I CCTNAGC 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 1136
BpuMI CCSGG 2 cut(s) 1200, 1412
BsaHI GRCGYC 1 cut(s) 867
BsaJI CCNNGG 2 cut(s) 1198, 1227
BsaWI WCCGGW 1 cut(s) 1433
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 875, 905
Bsc4I CCNNNNNNNGG 5 cut(s) 863, 1205, 1306, 1358, 1440
Bse118I RCCGGY 1 cut(s) 1433
Bse1I ACTGG 4 cut(s) 814, 857, 1353, 1487
Bse3DI GCAATG 2 cut(s) 218, 306
BseBI CCWGG 4 cut(s) 612, 779, 1206, 1229
BseDI CCNNGG 2 cut(s) 1198, 1227
BseGI GGATG 6 cut(s) 178, 238, 313, 439, 887, 1003
BseLI CCNNNNNNNGG 5 cut(s) 863, 1205, 1306, 1358, 1440
BseMI GCAATG 2 cut(s) 218, 306
BseMII CTCAG 2 cut(s) 126, 668
BseNI ACTGG 4 cut(s) 814, 857, 1353, 1487
BsePI GCGCGC 1 cut(s) 1220
BseRI GAGGAG 1 cut(s) 1380
BseSI GKGCMC 3 cut(s) 493, 557, 1088
BseX3I CGGCCG 1 cut(s) 1333
BseXI GCAGC 4 cut(s) 974, 1199, 1201, 1229
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 1222
Bsh1285I CGRYCG 2 cut(s) 1336, 1434
BshFI GGCC 7 cut(s) 498, 562, 782, 877, 1022, 1335, 1471
BshNI GGYRCC 1 cut(s) 1085
BshTI ACCGGT 1 cut(s) 1433
BsiEI CGRYCG 2 cut(s) 1336, 1434
BsiHKAI GWGCWC 4 cut(s) 493, 557, 1111, 1152
BsiSI CCGG 6 cut(s) 1200, 1332, 1336, 1383, 1411, 1434
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 5 cut(s) 863, 1205, 1306, 1358, 1440
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 1 cut(s) 929
BsmI GAATGC 1 cut(s) 1327
BsnI GGCC 7 cut(s) 498, 562, 782, 877, 1022, 1335, 1471
Bsp1286I GDGCHC 5 cut(s) 493, 557, 1088, 1111, 1152
Bsp143I GATC 3 cut(s) 118, 298, 387
BspACI CCGC 3 cut(s) 1250, 1310, 1398
BspANI GGCC 7 cut(s) 498, 562, 782, 877, 1022, 1335, 1471
BspCNI CTCAG 2 cut(s) 127, 669
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 2 cut(s) 1087, 1351
BspMAI CTGCAG 1 cut(s) 1219
BspMI ACCTGC 1 cut(s) 1410
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 1085
BsrDI GCAATG 2 cut(s) 218, 306
BsrFI RCCGGY 1 cut(s) 1433
BsrI ACTGG 4 cut(s) 814, 857, 1353, 1487
BssAI RCCGGY 1 cut(s) 1433
BssECI CCNNGG 2 cut(s) 1198, 1227
BssHII GCGCGC 1 cut(s) 1220
BssMI GATC 3 cut(s) 118, 298, 387
BssNI GRCGYC 1 cut(s) 867
Bst2UI CCWGG 4 cut(s) 612, 779, 1206, 1229
Bst4CI ACNGT 1 cut(s) 1057
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 867
BstC8I GCNNGC 2 cut(s) 369, 1222
BstDEI CTNAG 3 cut(s) 135, 677, 1343
BstF5I GGATG 6 cut(s) 178, 238, 313, 439, 887, 1003
BstFNI CGCG 1 cut(s) 1222
BstHHI GCGC 2 cut(s) 1222, 1224
BstKTI GATC 3 cut(s) 121, 301, 390
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 118, 298, 387
BstMCI CGRYCG 2 cut(s) 1336, 1434
BstNI CCWGG 4 cut(s) 612, 779, 1206, 1229
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 6 cut(s) 610, 777, 1198, 1204, 1227, 1410
BstSFI CTRYAG 1 cut(s) 1215
BstSLI GKGCMC 3 cut(s) 493, 557, 1088
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 4 cut(s) 974, 1199, 1201, 1229
BstV2I GAAGAC 1 cut(s) 11
BstZI CGGCCG 1 cut(s) 1333
BsuRI GGCC 7 cut(s) 498, 562, 782, 877, 1022, 1335, 1471
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 6 cut(s) 178, 238, 313, 439, 887, 1003
BtsIMutI CAGTG 1 cut(s) 1360
BveI ACCTGC 1 cut(s) 1410
Cac8I GCNNGC 2 cut(s) 369, 1222
CfoI GCGC 2 cut(s) 1222, 1224
Cfr10I RCCGGY 1 cut(s) 1433
Cfr13I GGNCC 5 cut(s) 268, 1020, 1202, 1349, 1469
CseI GACGC 1 cut(s) 856
Csp6I GTAC 5 cut(s) 16, 148, 362, 733, 1141
CspAI ACCGGT 1 cut(s) 1433
CviAII CATG 5 cut(s) 23, 343, 368, 707, 1024
CviQI GTAC 5 cut(s) 16, 148, 362, 733, 1141
DdeI CTNAG 3 cut(s) 135, 677, 1343
DpnI GATC 3 cut(s) 120, 300, 389
DpnII GATC 3 cut(s) 118, 298, 387
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 2 cut(s) 780, 1333
EagI CGGCCG 1 cut(s) 1333
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Ecl136II GAGCTC 1 cut(s) 1150
EclXI CGGCCG 1 cut(s) 1333
Eco24I GRGCYC 1 cut(s) 1152
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 3 cut(s) 268, 1202, 1349
Eco52I CGGCCG 1 cut(s) 1333
Eco53kI GAGCTC 1 cut(s) 1150
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 1150
EcoO109I RGGNCCY 1 cut(s) 1349
EcoRI GAATTC 2 cut(s) 139, 721
EcoRII CCWGG 4 cut(s) 610, 777, 1204, 1227
EcoRV GATATC 1 cut(s) 704
EcoT38I GRGCYC 1 cut(s) 1152
FaeI CATG 5 cut(s) 26, 346, 371, 710, 1027
FalI AAGNNNNNCTT 2 cut(s) 865, 897
FaqI GGGAC 1 cut(s) 929
FatI CATG 5 cut(s) 22, 342, 367, 706, 1023
FauI CCCGC 1 cut(s) 1391
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 5 cut(s) 963, 1188, 1215, 1218, 1497
FokI GGATG 6 cut(s) 185, 245, 300, 446, 874, 1010
FriOI GRGCYC 1 cut(s) 1152
Fsp4HI GCNGC 5 cut(s) 963, 1188, 1215, 1218, 1497
FspBI CTAG 4 cut(s) 716, 1176, 1425, 1501
GlaI GCGC 2 cut(s) 1221, 1223
GluI GCNGC 5 cut(s) 963, 1188, 1215, 1218, 1497
GsuI CTGGAG 2 cut(s) 221, 633
HaeIII GGCC 7 cut(s) 498, 562, 782, 877, 1022, 1335, 1471
HapII CCGG 6 cut(s) 1200, 1332, 1336, 1383, 1411, 1434
HgaI GACGC 1 cut(s) 856
HhaI GCGC 2 cut(s) 1222, 1224
Hin1I GRCGYC 1 cut(s) 867
Hin1II CATG 5 cut(s) 26, 346, 371, 710, 1027
Hin6I GCGC 2 cut(s) 1220, 1222
HinP1I GCGC 2 cut(s) 1220, 1222
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 2 cut(s) 920, 947
HinfI GANTC 3 cut(s) 303, 682, 1339
HpaII CCGG 6 cut(s) 1200, 1332, 1336, 1383, 1411, 1434
HphI GGTGA 3 cut(s) 416, 968, 1402
Hpy166II GTNNAC 5 cut(s) 148, 491, 555, 759, 769
Hpy188III TCNNGA 8 cut(s) 266, 471, 535, 716, 804, 1072, 1112, 1273
Hpy8I GTNNAC 5 cut(s) 148, 491, 555, 759, 769
Hpy99I CGWCG 1 cut(s) 1244
HpyAV CCTTC 4 cut(s) 1011, 1087, 1409, 1417
HpyCH4III ACNGT 1 cut(s) 1057
HpyCH4IV ACGT 2 cut(s) 195, 360
HpyF3I CTNAG 3 cut(s) 135, 677, 1343
HpySE526I ACGT 2 cut(s) 195, 360
Hsp92I GRCGYC 1 cut(s) 867
Hsp92II CATG 5 cut(s) 26, 346, 371, 710, 1027
HspAI GCGC 2 cut(s) 1220, 1222
Kzo9I GATC 3 cut(s) 118, 298, 387
LmnI GCTCC 4 cut(s) 1114, 1200, 1229, 1290
Lsp1109I GCAGC 4 cut(s) 974, 1199, 1201, 1229
LweI GCATC 3 cut(s) 670, 949, 988
MaeI CTAG 4 cut(s) 716, 1176, 1425, 1501
MaeII ACGT 2 cut(s) 195, 360
MalI GATC 3 cut(s) 120, 300, 389
MboI GATC 3 cut(s) 118, 298, 387
MboII GAAGA 7 cut(s) 16, 26, 29, 100, 347, 629, 677
MhlI GDGCHC 5 cut(s) 493, 557, 1088, 1111, 1152
MlsI TGGCCA 1 cut(s) 782
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 2 cut(s) 297, 1333
MmeI TCCRAC 3 cut(s) 150, 1137, 1428
Mox20I TGGCCA 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 782
MseI TTAA 7 cut(s) 50, 78, 398, 590, 690, 698, 849
Msp20I TGGCCA 1 cut(s) 782
MspI CCGG 6 cut(s) 1200, 1332, 1336, 1383, 1411, 1434
MspR9I CCNGG 6 cut(s) 612, 779, 1200, 1206, 1229, 1412
Mva1269I GAATGC 1 cut(s) 1327
MvaI CCWGG 4 cut(s) 612, 779, 1206, 1229
MvnI CGCG 1 cut(s) 1222
NciI CCSGG 2 cut(s) 1200, 1412
NdeII GATC 3 cut(s) 118, 298, 387
NlaIII CATG 5 cut(s) 26, 346, 371, 710, 1027
NlaIV GGNNCC 2 cut(s) 1087, 1351
NspI RCATGY 1 cut(s) 371
PaeI GCATGC 1 cut(s) 371
PauI GCGCGC 1 cut(s) 1220
PcsI WCGNNNNNNNCGW 1 cut(s) 1061
PctI GAATGC 1 cut(s) 1327
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 682
PflMI CCANNNNNTGG 2 cut(s) 863, 1306
PfoI TCCNGGA 2 cut(s) 610, 1410
PinAI ACCGGT 1 cut(s) 1433
PkrI GCNGC 5 cut(s) 964, 1189, 1216, 1219, 1498
PleI GAGTC 2 cut(s) 297, 1333
PpsI GAGTC 2 cut(s) 297, 1333
PpuMI RGGWCCY 1 cut(s) 1349
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 1152
Psp5II RGGWCCY 1 cut(s) 1349
Psp6I CCWGG 4 cut(s) 610, 777, 1204, 1227
PspGI CCWGG 4 cut(s) 610, 777, 1204, 1227
PspN4I GGNNCC 2 cut(s) 1087, 1351
PspPI GGNCC 5 cut(s) 268, 1020, 1202, 1349, 1469
PspPPI RGGWCCY 1 cut(s) 1349
PstI CTGCAG 1 cut(s) 1219
PteI GCGCGC 1 cut(s) 1220
RsaI GTAC 5 cut(s) 17, 149, 363, 734, 1142
RsaNI GTAC 5 cut(s) 16, 148, 362, 733, 1141
SacI GAGCTC 1 cut(s) 1152
SaqAI TTAA 7 cut(s) 50, 78, 398, 590, 690, 698, 849
SatI GCNGC 5 cut(s) 963, 1188, 1215, 1218, 1497
Sau3AI GATC 3 cut(s) 118, 298, 387
Sau96I GGNCC 5 cut(s) 268, 1020, 1202, 1349, 1469
SchI GAGTC 2 cut(s) 297, 1333
ScrFI CCNGG 6 cut(s) 612, 779, 1200, 1206, 1229, 1412
SduI GDGCHC 5 cut(s) 493, 557, 1088, 1111, 1152
SfaNI GCATC 3 cut(s) 670, 949, 988
SfcI CTRYAG 1 cut(s) 1215
SinI GGWCC 3 cut(s) 268, 1202, 1349
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SphI GCATGC 1 cut(s) 371
SsiI CCGC 3 cut(s) 1250, 1310, 1398
SspMI CTAG 4 cut(s) 716, 1176, 1425, 1501
SstI GAGCTC 1 cut(s) 1152
StyD4I CCNGG 6 cut(s) 610, 777, 1198, 1204, 1227, 1410
TaaI ACNGT 1 cut(s) 1057
TaiI ACGT 2 cut(s) 198, 363
TaqI TCGA 5 cut(s) 131, 301, 1064, 1098, 1430
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 1 cut(s) 682
Tru1I TTAA 7 cut(s) 50, 78, 398, 590, 690, 698, 849
Tru9I TTAA 7 cut(s) 50, 78, 398, 590, 690, 698, 849
TscAI CASTG 1 cut(s) 1360
TseI GCWGC 5 cut(s) 962, 1187, 1214, 1217, 1496
TspDTI ATGAA 7 cut(s) 17, 29, 39, 117, 359, 491, 555
TspGWI ACGGA 2 cut(s) 245, 1065
TspRI CASTG 1 cut(s) 1360
Van91I CCANNNNNTGG 2 cut(s) 863, 1306
VneI GTGCAC 2 cut(s) 489, 553
VpaK11BI GGWCC 3 cut(s) 268, 1202, 1349
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 7 cut(s) 139, 346, 410, 478, 542, 721, 974
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 4 cut(s) 716, 1176, 1425, 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.