Rmu_sc0000708.1_g000010

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000708.1
OG0002151
Physical Location & Seq
Forward (+)
51092 .. 52768
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1677 bp
atggtgaagagcacagagcgcgtctgccactacgaaaccttaggcctcgaaccaaattgctcagaaaaagaaatcaaggctgctcacaggaaactaatcctcacgtaccattgggacaaatgtagatcatcccaatgcggcttgtcccaagaagaagccactgccaaatctttagaggtccaacaagcctacgaaatccttatggatcccataaagcgagaaacctataacgcctaccgccagacctacgctgtccctgaagttttcaaccccgacctcgacgtcccctttgacagcatcgtcttcaacggctactccagctccagccgcagcttctacaatgcctactctgccatttttcaaaggatttacgccaacgagcgcgcttttcaaaagaagaacgacctgccgtggaattcggttcacaagcctccagacatgggcaatctcgacaccccttatcctgaggttgtccaattttacaactactggctcaactttagttccataatggatttctgctgggaggatccacatgatgagtatgatctaagtcagatctcccgcaaaggggtgaaggaatggtcccgcataaacatgaaggcgaggaagaaagcaaagaaggaatacaacaataaggtgcggtgtttgacacaaactgcgaaaaggctcgacaggagggtcgtgcagatggtagcgaagagggaggaggagagaaagagggagatagaggaggagagggagaggaggaagcggttgaagaaagagaagttggtgaaggctatggagtatgaggagcaggagtggacgaaaccggttgagaggaagagaaaatatagtaacaaggaggaggaggaggaggaggaaaaagggagagacgaatgggagtgtgtagtctgcaggaaggtgtttaggagtgagcggcagtgcagaaatcatgagcaatcaaaaaagcatctccgcatggttgcagagttaatggagttgttggaggtttcggaggaaaaaccagatgaagaagaggttttggaggaaggaaaaaggaatgaggtggttggagggagtgatagcgaagcggagtttgttgatggtgttaatgataatcagagggaaaagcttagtgaaacaggtgaagttgatgatgaggaagtggaggaggatgagattggtgttcttgaagcaatggtggcgaggcgaaagacgatggaagaggttggtgaagatattcttgaatcaatattggttgaacccatggcgagtagtagtcaagaggtgaagaatgcagacgaggtggctatggagcatgacaagctaaagaacaccaatcagaatgaaggagaaaggaaaccgaggagaagaagagccaagagtaatagaactgacgaacgtgatggttcaaatatgaaggaatccaaacctgattgtagtgcagaaaaaggatatgatgaggatcagatcaacaaaaggaagggtggagagaggaaagagaggagcggtaagaagagtaacggtaaaggagatattgagcataagaaaatgaggagtggaggaaggagtgaagagaagaagggtaagaagagaaatggtggagaaagaagaattaatgaacatggtacatcctatttttctgctgtgaataagagttatctgaacatattacatctgatattcatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

558

Amino Acids

65.63

Weight (kDa)

6.08

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 2.7e-15 DnaJ domain
ZUO1-like_ZHD PF21884 120 - 228 3.3e-16 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 295 - 319 1.1e-06 Zinc-finger double-stranded RNA-binding
zf-met PF12874 295 - 319 4.3e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 281, 299, 680
AatII GACGTC 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 414
AccBSI CCGCTC 2 cut(s) 922, 1494
AccII CGCG 2 cut(s) 21, 384
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1458
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 107, 1615
AfiI CCNNNNNNNGG 3 cut(s) 440, 570, 571
AgeI ACCGGT 1 cut(s) 814
AgsI TTSAA 9 cut(s) 268, 307, 362, 392, 760, 1178, 1232, 1247, 1398
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 321, 333, 1117, 1312
AluI AGCT 4 cut(s) 321, 333, 1117, 1312
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 870
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1458
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 80, 330
ApoI RAATTY 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AseI ATTAAT 1 cut(s) 1602
AsiGI ACCGGT 1 cut(s) 814
Asp700I GAANNNNTTC 1 cut(s) 1224
AspLEI GCGC 3 cut(s) 21, 384, 386
AspS9I GGNCC 2 cut(s) 178, 585
AsuHPI GGTGA 6 cut(s) 16, 586, 787, 1142, 1229, 1285
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BamHI GGATCC 2 cut(s) 205, 529
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 67, 342
BccI CCATC 4 cut(s) 685, 1082, 1198, 1385
BceAI ACGGC 2 cut(s) 325, 394
BcoDI GTCTC 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 414
BglII AGATCT 1 cut(s) 558
BisI GCNGC 5 cut(s) 81, 139, 328, 331, 923
BlsI GCNGC 5 cut(s) 82, 140, 329, 332, 924
Bme18I GGWCC 2 cut(s) 178, 585
BmgT120I GGNCC 2 cut(s) 178, 585
BmiI GGNNCC 3 cut(s) 207, 531, 587
BmsI GCATC 2 cut(s) 306, 964
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 3 cut(s) 301, 307, 417
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1449
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 410, 1251, 1349
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 570, 571
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 494
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1188
Bse8I GATNNNNATC 1 cut(s) 1449
BseDI CCNNGG 3 cut(s) 410, 1251, 1349
BseGI GGATG 3 cut(s) 128, 1165, 1616
BseJI GATNNNNATC 1 cut(s) 1449
BseLI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 2 cut(s) 75, 456
BseNI ACTGG 1 cut(s) 494
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 67, 342
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 3 cut(s) 707, 949, 1449
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 5 cut(s) 128, 130, 239, 269, 571
BslI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BsmAI GTCTC 1 cut(s) 870
BsmBI CGTCTC 1 cut(s) 870
BsmFI GGGAC 5 cut(s) 128, 130, 239, 269, 571
BsmI GAATGC 1 cut(s) 1285
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
Bsp19I CCATGG 1 cut(s) 1251
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 74, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 3 cut(s) 207, 531, 587
BspMAI CTGCAG 1 cut(s) 902
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1458
BspQI GCTCTTC 2 cut(s) 2, 1354
BsrBI CCGCTC 2 cut(s) 922, 1494
BsrDI GCAATG 1 cut(s) 1188
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 3 cut(s) 410, 1251, 1349
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 1251
Bst4CI ACNGT 1 cut(s) 1511
Bst6I CTCTTC 9 cut(s) 2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
BstACI GRCGYC 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 40, 61, 465, 551, 1118
BstDSI CCRYGG 2 cut(s) 410, 1251
BstF5I GGATG 3 cut(s) 128, 1165, 1616
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 3 cut(s) 21, 384, 386
BstKTI GATC 7 cut(s) 128, 208, 532, 550, 561, 1453, 1458
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
BstMWI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 350, 1187, 1309
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 2 cut(s) 67, 342
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 205, 529, 558
BstYI RGATCY 3 cut(s) 205, 529, 558
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 410, 1251
BtsCI GGATG 3 cut(s) 128, 1165, 1616
BtsI GCAGTG 2 cut(s) 159, 932
BtsIMutI CAGTG 2 cut(s) 159, 932
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 937
CfoI GCGC 3 cut(s) 21, 384, 386
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 178, 585
CseI GACGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 106, 1614
CspAI ACCGGT 1 cut(s) 814
CviAII CATG 8 cut(s) 439, 536, 598, 938, 964, 1252, 1304, 1610
CviQI GTAC 2 cut(s) 106, 1614
DdeI CTNAG 5 cut(s) 40, 61, 465, 551, 1118
DpnI GATC 7 cut(s) 127, 207, 531, 549, 560, 1452, 1457
DpnII GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
DrdI GACNNNNNNGTC 3 cut(s) 281, 299, 680
DseDI GACNNNNNNGTC 3 cut(s) 281, 299, 680
Eam1104I CTCTTC 9 cut(s) 2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
EarI CTCTTC 9 cut(s) 2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
Eco130I CCWWGG 1 cut(s) 1251
Eco147I AGGCCT 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
EcoRI GAATTC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 1251
ErhI CCWWGG 1 cut(s) 1251
Esp3I CGTCTC 1 cut(s) 870
FaeI CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
FalI AAGNNNNNCTT 2 cut(s) 1212, 1244
FaqI GGGAC 5 cut(s) 128, 130, 239, 269, 571
FatI CATG 8 cut(s) 438, 535, 597, 937, 963, 1251, 1303, 1609
FauI CCCGC 2 cut(s) 572, 596
Fnu4HI GCNGC 5 cut(s) 81, 139, 328, 331, 923
FokI GGATG 3 cut(s) 115, 1172, 1603
Fsp4HI GCNGC 5 cut(s) 81, 139, 328, 331, 923
GlaI GCGC 3 cut(s) 20, 383, 385
GluI GCNGC 5 cut(s) 81, 139, 328, 331, 923
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 3 cut(s) 301, 307, 417
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 10
HhaI GCGC 3 cut(s) 21, 384, 386
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
Hin6I GCGC 3 cut(s) 19, 382, 384
HinP1I GCGC 3 cut(s) 19, 382, 384
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 2 cut(s) 1232, 1409
HpaII CCGG 1 cut(s) 815
HphI GGTGA 6 cut(s) 16, 586, 787, 1142, 1229, 1285
Hpy166II GTNNAC 2 cut(s) 424, 807
Hpy188I TCNGA 8 cut(s) 64, 558, 1000, 1107, 1329, 1455, 1650, 1665
Hpy188III TCNNGA 7 cut(s) 434, 449, 464, 938, 1175, 1229, 1268
Hpy8I GTNNAC 2 cut(s) 424, 807
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 1511
HpyCH4IV ACGT 3 cut(s) 104, 282, 1387
HpyCH4V TGCA 6 cut(s) 688, 900, 930, 971, 1283, 1430
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 350, 1187, 1309
HpyF3I CTNAG 5 cut(s) 40, 61, 465, 551, 1118
HpySE526I ACGT 3 cut(s) 104, 282, 1387
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
HspAI GCGC 3 cut(s) 19, 382, 384
Kzo9I GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
LguI GCTCTTC 2 cut(s) 2, 1354
LmnI GCTCC 4 cut(s) 326, 796, 1300, 1491
Lsp1109I GCAGC 2 cut(s) 67, 342
LweI GCATC 2 cut(s) 306, 964
MaeII ACGT 3 cut(s) 104, 282, 1387
MaeIII GTNAC 2 cut(s) 839, 1505
MalI GATC 7 cut(s) 127, 207, 531, 549, 560, 1452, 1457
MbiI CCGCTC 2 cut(s) 922, 1494
MboI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
MflI RGATCY 3 cut(s) 205, 529, 558
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 4 cut(s) 55, 415, 476, 1599
MmeI TCCRAC 3 cut(s) 205, 969, 1036
MroXI GAANNNNTTC 1 cut(s) 1224
MseI TTAA 3 cut(s) 977, 1095, 1602
MslI CAYNNNNRTG 2 cut(s) 133, 596
MspI CCGG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 1285
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 350, 1187, 1309
NcoI CCATGG 1 cut(s) 1251
NdeII GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
NlaIII CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
NlaIV GGNNCC 3 cut(s) 207, 531, 587
PagI TCATGA 1 cut(s) 937
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 2, 1354
PctI GAATGC 1 cut(s) 1285
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 2 cut(s) 1232, 1409
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 5 cut(s) 82, 140, 329, 332, 924
Ppu21I YACGTR 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 1602
PspFI CCCAGC 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 207, 531, 587
PspPI GGNCC 2 cut(s) 178, 585
PstI CTGCAG 1 cut(s) 902
PsuI RGATCY 3 cut(s) 205, 529, 558
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 2 cut(s) 107, 1615
RsaNI GTAC 2 cut(s) 106, 1614
RseI CAYNNNNRTG 2 cut(s) 133, 596
SapI GCTCTTC 2 cut(s) 2, 1354
SaqAI TTAA 3 cut(s) 977, 1095, 1602
SatI GCNGC 5 cut(s) 81, 139, 328, 331, 923
Sau3AI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
Sau96I GGNCC 2 cut(s) 178, 585
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 306, 964
SfcI CTRYAG 1 cut(s) 898
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 2 cut(s) 133, 596
Sse9I AATT 4 cut(s) 55, 415, 476, 1599
SseBI AGGCCT 1 cut(s) 45
SspI AATATT 1 cut(s) 1239
StuI AGGCCT 1 cut(s) 45
StyI CCWWGG 1 cut(s) 1251
TaaI ACNGT 1 cut(s) 1511
TaiI ACGT 3 cut(s) 107, 285, 1390
TaqI TCGA 4 cut(s) 48, 279, 450, 672
TasI AATT 4 cut(s) 55, 415, 476, 1599
TauI GCSGC 3 cut(s) 141, 330, 925
TfiI GAWTC 2 cut(s) 1232, 1409
Tru1I TTAA 3 cut(s) 977, 1095, 1602
Tru9I TTAA 3 cut(s) 977, 1095, 1602
TscAI CASTG 2 cut(s) 166, 932
TseI GCWGC 2 cut(s) 80, 330
TspDTI ATGAA 6 cut(s) 614, 1029, 1347, 1418, 1620, 1660
TspRI CASTG 2 cut(s) 166, 932
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1602
XapI RAATTY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 1224
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.