AT1G06630

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000813
Physical Location & Seq
Forward (+)
2027606 .. 2031388
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06630.4

Sequence Viewer

Length: 1434 bp
ATGGATGCCAAAAAGTTGGATACTGGCCCGAGAGATGCAATCAACTGGCTCCCTGACGAGATTCTGGGCAAAATCTTGTCATTACTTGCGACAAAACAGGCTGTTTCAACATCGGTTCTTTCTAAAAAGTGGAGGACTCTCTTTAAATTAGTGGATACCCTCGAGTTTGACGATTCTGTCTCTGGAATGGGTGAACAAGAAGCGAGCTATGTGTTTCCGGAGAGCTTTAAGGATTTGGTGGATCGAACAGTAGCTTTGCAGTGTGATTATCCGATCAGGAAGTTGTCACTAAAATGTCATGTTGGCAGGGACGATGAACAACGAAAGGCTTGTGTGGGCCGCTGGATATCGAATGTCGTAGGGCGCGGTGTTTCAGAAGTGGTACTAAGGATCAATGATCGTGGTTTACACTTTCTGTCTCCTCAGCTCTTGACATGCAAAACACTGGTTAAGCTGACACTAGGCACACGTCTCTTTCTTGGAAAGCTTCCTTCATATGTGTCACTTCCATCTCTTAAGTTTCTCTTCATCCATAGCGTCTTCTTTGATGATTTTGGAGAGTTGTCTAATGTGCTTCTTGCTGGTTGCCCGGTGGTCGAGGCGTTATATCTCAATCAAAATGGCGAATCAATGCCTTACACCATATCGAGTCCTACGCTCAAGAGACTATCAGTTCACTACGAGTATCATTTTGAGAGCGTAATCTCATTTGACCTGCCAAATCTCGAGTACCTTGACTACTCTGATTACGCCTTGTATGGGTATCCACAAGTTAACTTGGAATCCCTTGTTGAAGCTTATCTGAATCTTGATAAGGCTGAACATGTCGAGAGCCCGGATGTAACCAAACTCATTATGGGAATAAGAAATGTTGAGATCCTTAGTCTATCTCCCGATTCGGTTGGAGTGATCTATTCATGCTGTAAATATGGGCTACTTCTACCGGTATTCAACAATCTGGTTAGTTTATCTTTTGGGACTAAGAAAACACGAGCTTGGAAATTGCTTGCAGATATACTTAAACAGTCTCCAAAGCTTGAAACTCTCATCATCGAGGATCTGAATGGTTACCCACTCGATGTCTCCATGCCTCTGAACCAAGTGAAGGAGTTGCAGATTCTGGAATATGGAGAAAGTGATGACGAGAGACTCCAAAGTCGATTGGAATCGAAAAACAAACTCGGTTCTTTTGATTTCGAGAAGTTTCTGTTCCCGATTCCTCCGCCAATCAAAATCACGGTGAGTCCTCATCCTTCTGATTCCGGTGGTGATGGTTCGAACTCGAAGTCTTCTTCCGACGACGAGTTTGTTAGCTTGGACTCTTCCACTTCTGGCTTATGTTCTTCTTCCGAACATGTGAGAAAGAAGAAAATGAAGAGGAACAATACAGAAGCAGAAGCTGATGCTTCTTCCTCAGACACATCTTCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

477

Amino Acids

53.17

Weight (kDa)

5.31

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 51 2.3e-07 F-box domain
LRR_At5g56370 PF24758 113 - 248 1.2e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 176, 1155
Acc36I ACCTGC 1 cut(s) 723
AccII CGCG 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 3 cut(s) 340, 366, 1223
AclWI GGATC 4 cut(s) 249, 398, 871, 1065
AcuI CTGAAG 1 cut(s) 1410
AfaI GTAC 2 cut(s) 384, 731
AfiI CCNNNNNNNGG 2 cut(s) 759, 1105
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 3 cut(s) 467, 823, 1354
AgeI ACCGGT 1 cut(s) 943
AgsI TTSAA 4 cut(s) 108, 794, 952, 1040
AjiI CACGTC 1 cut(s) 470
Alw26I GTCTC 7 cut(s) 184, 423, 476, 658, 1032, 1087, 1141
AlwI GGATC 4 cut(s) 249, 398, 871, 1065
AlwNI CAGNNNCTG 2 cut(s) 1120, 1400
Ama87I CYCGRG 3 cut(s) 28, 161, 725
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 2 cut(s) 25, 337
ArsI GACNNNNNNTTYG 4 cut(s) 1271, 1289, 1303, 1321
AsiGI ACCGGT 1 cut(s) 943
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 26, 337
AsuC2I CCSGG 2 cut(s) 590, 836
AsuHPI GGTGA 3 cut(s) 203, 1252, 1280
AsuII TTCGAA 1 cut(s) 1277
AvaI CYCGRG 3 cut(s) 28, 161, 725
BanII GRGCYC 1 cut(s) 836
BauI CACGAG 1 cut(s) 990
BbsI GAAGAC 2 cut(s) 532, 1281
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 517, 1265
BciVI GTATCC 3 cut(s) 13, 148, 774
BcnI CCSGG 2 cut(s) 590, 836
BcoDI GTCTC 7 cut(s) 184, 423, 476, 658, 1032, 1087, 1141
BfaI CTAG 1 cut(s) 461
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 723
BfuI GTATCC 3 cut(s) 13, 148, 774
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 590, 836
BmeT110I CYCGRG 3 cut(s) 28, 161, 725
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 26, 337
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 590, 836
BmsI GCATC 2 cut(s) 25, 1393
BpiI GAAGAC 2 cut(s) 532, 1281
Bpu10I CCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 1277
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 2 cut(s) 590, 836
BsaBI GATNNNNATC 1 cut(s) 1165
BsaWI WCCGGW 3 cut(s) 217, 943, 1262
Bsc4I CCNNNNNNNGG 2 cut(s) 759, 1105
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 3 cut(s) 28, 50, 450
Bse8I GATNNNNATC 1 cut(s) 1165
BseAI TCCGGA 1 cut(s) 217
BseGI GGATG 4 cut(s) 10, 528, 844, 1249
BseJI GATNNNNATC 1 cut(s) 1165
BseLI CCNNNNNNNGG 2 cut(s) 759, 1105
BseMII CTCAG 2 cut(s) 437, 1428
BseNI ACTGG 3 cut(s) 28, 50, 450
BseRI GAGGAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 2 cut(s) 27, 339
BshTI ACCGGT 1 cut(s) 943
BsiHKCI CYCGRG 3 cut(s) 28, 161, 725
BsiSI CCGG 5 cut(s) 218, 590, 836, 944, 1263
BslFI GGGAC 2 cut(s) 323, 991
BslI CCNNNNNNNGG 2 cut(s) 759, 1105
BsmAI GTCTC 7 cut(s) 184, 423, 476, 658, 1032, 1087, 1141
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 323, 991
BsnI GGCC 2 cut(s) 27, 339
BsoBI CYCGRG 3 cut(s) 28, 161, 725
Bsp119I TTCGAA 1 cut(s) 1277
Bsp1286I GDGCHC 1 cut(s) 836
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
BspACI CCGC 3 cut(s) 340, 366, 1223
BspANI GGCC 2 cut(s) 27, 339
BspCNI CTCAG 2 cut(s) 436, 1427
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 723
BspPI GGATC 4 cut(s) 249, 398, 871, 1065
BspT104I TTCGAA 1 cut(s) 1277
BspTI CTTAAG 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 943
BsrI ACTGG 3 cut(s) 28, 50, 450
BssAI RCCGGY 1 cut(s) 943
BssMI GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
BssSI CACGAG 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 990
Bst4CI ACNGT 3 cut(s) 250, 1026, 1240
Bst6I CTCTTC 3 cut(s) 530, 1327, 1370
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 1277
BstC8I GCNNGC 2 cut(s) 205, 1008
BstDEI CTNAG 5 cut(s) 386, 423, 881, 981, 1414
BstEII GGTNACC 1 cut(s) 1067
BstF5I GGATG 4 cut(s) 10, 528, 844, 1249
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 7 cut(s) 244, 276, 393, 400, 879, 912, 1060
BstMAI GTCTC 7 cut(s) 184, 423, 476, 658, 1032, 1087, 1141
BstMBI GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
BstNSI RCATGY 3 cut(s) 438, 827, 1358
BstPI GGTNACC 1 cut(s) 1067
BstSCI CCNGG 2 cut(s) 588, 834
BstUI CGCG 1 cut(s) 366
BstV2I GAAGAC 2 cut(s) 532, 1281
BstX2I RGATCY 2 cut(s) 876, 1057
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 876, 1057
BsuI GTATCC 3 cut(s) 13, 148, 774
BsuRI GGCC 2 cut(s) 27, 339
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 4 cut(s) 10, 528, 844, 1249
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 266, 443
BveI ACCTGC 1 cut(s) 723
Cac8I GCNNGC 2 cut(s) 205, 1008
CaiI CAGNNNCTG 2 cut(s) 1120, 1400
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 2 cut(s) 26, 337
CseI GACGC 1 cut(s) 526
Csp6I GTAC 2 cut(s) 383, 730
CspAI ACCGGT 1 cut(s) 943
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 6 cut(s) 299, 435, 824, 918, 1087, 1355
CviQI GTAC 2 cut(s) 383, 730
DdeI CTNAG 5 cut(s) 386, 423, 881, 981, 1414
DpnI GATC 7 cut(s) 243, 275, 392, 399, 878, 911, 1059
DpnII GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
DraI TTTAAA 1 cut(s) 145
DrdI GACNNNNNNGTC 2 cut(s) 176, 1155
DseDI GACNNNNNNGTC 2 cut(s) 176, 1155
Eam1104I CTCTTC 3 cut(s) 530, 1327, 1370
EarI CTCTTC 3 cut(s) 530, 1327, 1370
EciI GGCGGA 1 cut(s) 1212
Eco24I GRGCYC 1 cut(s) 836
Eco32I GATATC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 1410
Eco88I CYCGRG 3 cut(s) 28, 161, 725
Eco91I GGTNACC 1 cut(s) 1067
EcoO65I GGTNACC 1 cut(s) 1067
EcoRV GATATC 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 836
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 6 cut(s) 302, 438, 827, 921, 1090, 1358
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 2 cut(s) 323, 991
FatI CATG 6 cut(s) 298, 434, 823, 917, 1086, 1354
FauNDI CATATG 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 4 cut(s) 17, 515, 851, 1236
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 461
GlaI GCGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 2 cut(s) 27, 339
HapII CCGG 5 cut(s) 218, 590, 836, 944, 1263
HgaI GACGC 1 cut(s) 526
HhaI GCGC 1 cut(s) 366
Hin1II CATG 6 cut(s) 302, 438, 827, 921, 1090, 1358
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 3 cut(s) 485, 795, 1034
HpaI GTTAAC 1 cut(s) 775
HpaII CCGG 5 cut(s) 218, 590, 836, 944, 1263
HphI GGTGA 3 cut(s) 203, 1252, 1280
Hpy166II GTNNAC 4 cut(s) 194, 407, 676, 775
Hpy8I GTNNAC 4 cut(s) 194, 407, 676, 775
Hpy99I CGWCG 2 cut(s) 1301, 1304
HpyAV CCTTC 3 cut(s) 501, 1099, 1263
HpyCH4III ACNGT 3 cut(s) 250, 1026, 1240
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 5 cut(s) 38, 259, 438, 1010, 1114
HpyF3I CTNAG 5 cut(s) 386, 423, 881, 981, 1414
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 6 cut(s) 302, 438, 827, 921, 1090, 1358
HspAI GCGC 1 cut(s) 364
Kpn2I TCCGGA 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
LmnI GCTCC 1 cut(s) 54
LweI GCATC 2 cut(s) 25, 1393
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 4 cut(s) 285, 501, 841, 1067
MalI GATC 7 cut(s) 243, 275, 392, 399, 878, 911, 1059
MboI GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
MflI RGATCY 2 cut(s) 876, 1057
MhlI GDGCHC 1 cut(s) 836
MluCI AATT 2 cut(s) 146, 1001
MlyI GAGTC 5 cut(s) 130, 658, 1143, 1252, 1313
MmeI TCCRAC 2 cut(s) 883, 1320
MroI TCCGGA 1 cut(s) 217
MseI TTAA 7 cut(s) 144, 228, 450, 516, 774, 1020, 1432
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 5 cut(s) 218, 590, 836, 944, 1263
MspR9I CCNGG 2 cut(s) 590, 836
MvnI CGCG 1 cut(s) 366
NciI CCSGG 2 cut(s) 590, 836
NdeI CATATG 1 cut(s) 496
NdeII GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
NlaIII CATG 6 cut(s) 302, 438, 827, 921, 1090, 1358
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 285, 501
NspI RCATGY 3 cut(s) 438, 827, 1358
NspV TTCGAA 1 cut(s) 1277
PaeR7I CTCGAG 2 cut(s) 161, 725
PciI ACATGT 2 cut(s) 823, 1354
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 943
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 5 cut(s) 130, 657, 1143, 1251, 1313
PpsI GAGTC 5 cut(s) 130, 657, 1143, 1251, 1313
PscI ACATGT 2 cut(s) 823, 1354
PspEI GGTNACC 1 cut(s) 1067
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 26, 337
PspXI VCTCGAGB 1 cut(s) 161
PstNI CAGNNNCTG 2 cut(s) 1120, 1400
PsuI RGATCY 2 cut(s) 876, 1057
RsaI GTAC 2 cut(s) 384, 731
RsaNI GTAC 2 cut(s) 383, 730
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 7 cut(s) 144, 228, 450, 516, 774, 1020, 1432
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 7 cut(s) 241, 273, 390, 397, 876, 909, 1057
Sau96I GGNCC 2 cut(s) 26, 337
SchI GAGTC 5 cut(s) 130, 658, 1143, 1252, 1313
ScrFI CCNGG 2 cut(s) 590, 836
SduI GDGCHC 1 cut(s) 836
SfaNI GCATC 2 cut(s) 25, 1393
Sfr274I CTCGAG 2 cut(s) 161, 725
SfuI TTCGAA 1 cut(s) 1277
SlaI CTCGAG 2 cut(s) 161, 725
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 4 cut(s) 161, 515, 659, 725
SmoI CTYRAG 4 cut(s) 161, 515, 659, 725
Sse9I AATT 2 cut(s) 146, 1001
SsiI CCGC 3 cut(s) 340, 366, 1223
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 588, 834
TaaI ACNGT 3 cut(s) 250, 1026, 1240
TaiI ACGT 1 cut(s) 472
TasI AATT 2 cut(s) 146, 1001
TauI GCSGC 1 cut(s) 342
Tru1I TTAA 7 cut(s) 144, 228, 450, 516, 774, 1020, 1432
Tru9I TTAA 7 cut(s) 144, 228, 450, 516, 774, 1020, 1432
TscAI CASTG 2 cut(s) 266, 450
TseFI GTSAC 2 cut(s) 285, 501
Tsp45I GTSAC 2 cut(s) 285, 501
TspDTI ATGAA 5 cut(s) 330, 483, 517, 906, 1388
TspRI CASTG 2 cut(s) 266, 450
Vha464I CTTAAG 1 cut(s) 515
XceI RCATGY 3 cut(s) 438, 827, 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XhoI CTCGAG 2 cut(s) 161, 725
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.