AT3G59180

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
21880719 .. 21882459
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59180.1

Sequence Viewer

Length: 1428 bp
ATGAAAGAGAGAATAAGATTTCTACAAGTTTTATGGATTTTGTGGATAGAGTATTGGCATTGCAAGGCAATTCTCCTGAGTAAACATAGAAGGCGATGGATACATAAAAGTTTCAAGCTTTTTGTGAATAGATTAATGGCTTTGCAAGGAAATGCTCCGTTAAACAGATTCTCTCTCAAGTGTAAAGTTCGCTGTGATTCAGCTTGCGTTGATGGTTGGATTATCAATGTATTGGATCGTGGTGTTTTAGATCTTGATCTAAACATCTCTTCGGAAAGTGATTATAAGCTGCCTTCAGAGGTCTTCTTGAACAAGACATTGGTTAGGCTGAAACTAGGAGGTAAAGATGAGTTCATCATTGATGTGGAAGAAGTTTTTCTTCCGAAGCTTAAGACTTTGTATCTTCATGGTTTCGTTTGTTTCGAAGATAGTGGTGTTGCGTGTGCCAAGCTAATTTCTGGTTGTCCTGTGCTTGAGGAGTTAGTTATGATTAATTTGATGTGGGGACTTATGGACGTTTGCTCTGTGTCTAACCCGACTCTCAAGAGAGTAACAATCTGTTCTGAGATTATTGATTATAATCCTCAGAGTGTATCATTTGATACTCCAAATCTTGTTTACTTAGAATTTACTGATGTTGTTGCAATCAAGTATCCAAAAGTGAATTTGGATTCGCTTGTTGACGCCAGGCTCGGTCTTCGACTGACACCTTGTCAGACCACGAAGGCAAGAAGATCAGTAAAAAGTGTGGGACAAGGAATGATGGGAAATGCAGCAGATTTTCTTATGGGAATTAGCAATGTTAAGATCCTTTACTTATCATTCGACACACTTGAGGTACTTAATTTCTGCTGCAAAACAATACCGCTTTTCAACAACCTGACTTACTTAACTATCGAGACTAACGAGGATGTAGGATGGGAATCATTGTCGAATATACTCGAGAATTGTCCAAATCTAGAAACTATCATTTTCAAAGGACTTCATTACAGAGATACAAATCAATGTTGGGACGAGAGATACCGCTTCAAAGACACAAACAAATGTTTTGAAGAGGATGCAGACATGTGTATGTGCAAGCCTTGGGAAGCGACTCCTATCTGTCTATCATCAAGTTCGGTGAAGATTCTAGAGGTATTGAAGTTTGGAGAAGTCACTAGTTACAAAGATGACATGGATAGGCAGACGGAGGTGATTAAATTCTTCTTGGAGACAATGCCGAATCTCGAACAAGTGATATTATACTACGATACTCCATTTGATGATGATCTGAGTATATTATCAACTGAACTTCAGATGCTTGAAAAAGTAGCCTCACCTAAATGCAAGATTCAAGTTATCTCTGATAACATCAGCTACTCATCTACTGTGCACTCTTCCTCATCAACAAGTGGACTCGTCTTCCTCAACAACACCTTTCCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

475

Amino Acids

54.39

Weight (kDa)

5.4

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 70 - 208 4.5e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 285, 579
AciI CCGC 2 cut(s) 866, 1024
AclWI GGATC 2 cut(s) 243, 802
AcsI RAATTY 3 cut(s) 626, 664, 1199
AcuI CTGAAG 2 cut(s) 279, 1277
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 1 cut(s) 840
AflII CTTAAG 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 9 cut(s) 115, 310, 874, 976, 1030, 1052, 1141, 1304, 1334
AhdI GACNNNNNGTC 1 cut(s) 711
AhlI ACTAGT 1 cut(s) 1157
AjnI CCWGG 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 6 cut(s) 118, 203, 289, 388, 451, 1356
AluI AGCT 6 cut(s) 118, 203, 289, 388, 451, 1356
Alw21I GWGCWC 1 cut(s) 1374
Alw26I GTCTC 2 cut(s) 893, 1205
Alw44I GTGCAC 1 cut(s) 1370
AlwI GGATC 2 cut(s) 243, 802
Ama87I CYCGRG 1 cut(s) 941
ApaLI GTGCAC 1 cut(s) 1370
ApeKI GCWGC 3 cut(s) 289, 773, 852
ApoI RAATTY 3 cut(s) 626, 664, 1199
AseI ATTAAT 2 cut(s) 134, 492
Asp700I GAANNNNTTC 1 cut(s) 375
AsuHPI GGTGA 3 cut(s) 1132, 1204, 1308
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 941
BaeGI GKGCMC 1 cut(s) 1374
BbsI GAAGAC 3 cut(s) 295, 689, 1393
Bbv12I GWGCWC 1 cut(s) 1374
BbvI GCAGC 3 cut(s) 276, 785, 839
BccI CCATC 4 cut(s) 90, 206, 757, 912
BciT130I CCWGG 1 cut(s) 688
BciVI GTATCC 2 cut(s) 93, 663
BcoDI GTCTC 2 cut(s) 893, 1205
BcuI ACTAGT 1 cut(s) 1157
BfaI CTAG 4 cut(s) 335, 959, 1130, 1158
BfrI CTTAAG 1 cut(s) 389
BfuI GTATCC 2 cut(s) 93, 663
BglII AGATCT 1 cut(s) 250
BisI GCNGC 3 cut(s) 290, 774, 853
BlsI GCNGC 3 cut(s) 291, 775, 854
Bme1390I CCNGG 1 cut(s) 688
BmeRI GACNNNNNGTC 1 cut(s) 711
BmeT110I CYCGRG 1 cut(s) 941
BmrFI CCNGG 1 cut(s) 688
BmsI GCATC 2 cut(s) 1048, 1287
BpiI GAAGAC 3 cut(s) 295, 689, 1393
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 4 cut(s) 161, 494, 527, 854
BsaBI GATNNNNATC 5 cut(s) 255, 579, 922, 999, 1266
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 1082
BsaWI WCCGGW 1 cut(s) 1420
Bse3DI GCAATG 2 cut(s) 58, 805
Bse8I GATNNNNATC 5 cut(s) 255, 579, 922, 999, 1266
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 1 cut(s) 1082
BseGI GGATG 3 cut(s) 916, 923, 1063
BseJI GATNNNNATC 5 cut(s) 255, 579, 922, 999, 1266
BseMI GCAATG 2 cut(s) 58, 805
BseMII CTCAG 4 cut(s) 68, 555, 599, 1262
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 1374
BseXI GCAGC 3 cut(s) 276, 785, 839
BsiHKAI GWGCWC 1 cut(s) 1374
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 1 cut(s) 1421
BslFI GGGAC 3 cut(s) 519, 765, 1025
BsmAI GTCTC 2 cut(s) 893, 1205
BsmFI GGGAC 3 cut(s) 519, 765, 1025
BsoBI CYCGRG 1 cut(s) 941
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 1374
Bsp143I GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
BspACI CCGC 2 cut(s) 866, 1024
BspCNI CTCAG 4 cut(s) 69, 556, 598, 1263
BspPI GGATC 2 cut(s) 243, 802
BspT104I TTCGAA 1 cut(s) 423
BspTI CTTAAG 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 58, 805
BssECI CCNNGG 1 cut(s) 1082
BssMI GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 1082
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 1 cut(s) 1369
Bst6I CTCTTC 3 cut(s) 274, 1047, 1381
BstACI GRCGYC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 205, 1079
BstDEI CTNAG 5 cut(s) 77, 564, 585, 622, 1271
BstF5I GGATG 3 cut(s) 916, 923, 1063
BstKTI GATC 6 cut(s) 238, 253, 259, 737, 810, 1270
BstMAI GTCTC 2 cut(s) 893, 1205
BstMBI GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
BstNI CCWGG 1 cut(s) 688
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 1 cut(s) 686
BstSLI GKGCMC 1 cut(s) 1374
BstV1I GCAGC 3 cut(s) 276, 785, 839
BstV2I GAAGAC 3 cut(s) 295, 689, 1393
BstX2I RGATCY 2 cut(s) 250, 807
BstYI RGATCY 2 cut(s) 250, 807
BsuI GTATCC 2 cut(s) 93, 663
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 916, 923, 1063
Cac8I GCNNGC 2 cut(s) 205, 1079
CseI GACGC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 839
CviAII CATG 3 cut(s) 407, 1066, 1174
CviQI GTAC 1 cut(s) 839
DdeI CTNAG 5 cut(s) 77, 564, 585, 622, 1271
DpnI GATC 6 cut(s) 237, 252, 258, 736, 809, 1269
DpnII GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
DriI GACNNNNNGTC 1 cut(s) 711
Eam1104I CTCTTC 3 cut(s) 274, 1047, 1381
Eam1105I GACNNNNNGTC 1 cut(s) 711
EarI CTCTTC 3 cut(s) 274, 1047, 1381
Eco130I CCWWGG 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 279, 1277
Eco88I CYCGRG 1 cut(s) 941
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 1082
ErhI CCWWGG 1 cut(s) 1082
FaeI CATG 3 cut(s) 410, 1069, 1177
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 3 cut(s) 519, 765, 1025
FatI CATG 3 cut(s) 406, 1065, 1173
Fnu4HI GCNGC 3 cut(s) 290, 774, 853
FokI GGATG 3 cut(s) 923, 930, 1070
Fsp4HI GCNGC 3 cut(s) 290, 774, 853
FspBI CTAG 4 cut(s) 335, 959, 1130, 1158
GluI GCNGC 3 cut(s) 290, 774, 853
HapII CCGG 1 cut(s) 1421
HgaI GACGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 3 cut(s) 410, 1069, 1177
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 2 cut(s) 116, 386
HpaII CCGG 1 cut(s) 1421
HphI GGTGA 3 cut(s) 1132, 1204, 1308
Hpy166II GTNNAC 5 cut(s) 83, 619, 682, 1372, 1394
Hpy188I TCNGA 9 cut(s) 274, 298, 384, 565, 588, 717, 1272, 1296, 1345
Hpy188III TCNNGA 9 cut(s) 76, 254, 307, 544, 898, 943, 959, 1130, 1226
Hpy8I GTNNAC 5 cut(s) 83, 619, 682, 1372, 1394
HpyAV CCTTC 3 cut(s) 84, 303, 718
HpyCH4III ACNGT 1 cut(s) 1369
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 9 cut(s) 63, 145, 644, 773, 855, 1061, 1077, 1326, 1372
HpyF3I CTNAG 5 cut(s) 77, 564, 585, 622, 1271
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 3 cut(s) 410, 1069, 1177
Kzo9I GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 89, 444, 480, 673, 700, 893
Lsp1109I GCAGC 3 cut(s) 276, 785, 839
LweI GCATC 2 cut(s) 1048, 1287
MaeI CTAG 4 cut(s) 335, 959, 1130, 1158
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 3 cut(s) 550, 1153, 1160
MalI GATC 6 cut(s) 237, 252, 258, 736, 809, 1269
MboI GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
MflI RGATCY 2 cut(s) 250, 807
MhlI GDGCHC 1 cut(s) 1374
MluCI AATT 9 cut(s) 69, 453, 493, 626, 664, 792, 844, 946, 1199
MlyI GAGTC 3 cut(s) 532, 1087, 1389
MmeI TCCRAC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 9 cut(s) 134, 161, 390, 492, 804, 843, 890, 1197, 1426
MslI CAYNNNNRTG 3 cut(s) 362, 1070, 1321
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 1 cut(s) 1421
MspR9I CCNGG 1 cut(s) 688
MvaI CCWGG 1 cut(s) 688
NdeII GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
NlaIII CATG 3 cut(s) 410, 1069, 1177
NmuCI GTSAC 1 cut(s) 1153
NspI RCATGY 1 cut(s) 1069
NspV TTCGAA 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 941
PciI ACATGT 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 903
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 7 cut(s) 168, 197, 671, 923, 1126, 1222, 1330
PkrI GCNGC 3 cut(s) 291, 775, 854
PleI GAGTC 3 cut(s) 532, 1087, 1389
PpsI GAGTC 3 cut(s) 532, 1087, 1389
PscI ACATGT 1 cut(s) 1065
PshBI ATTAAT 2 cut(s) 134, 492
PsiI TTATAA 2 cut(s) 285, 579
Psp6I CCWGG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 686
PsuI RGATCY 2 cut(s) 250, 807
RsaI GTAC 1 cut(s) 840
RsaNI GTAC 1 cut(s) 839
RseI CAYNNNNRTG 3 cut(s) 362, 1070, 1321
SaqAI TTAA 9 cut(s) 134, 161, 390, 492, 804, 843, 890, 1197, 1426
SatI GCNGC 3 cut(s) 290, 774, 853
Sau3AI GATC 6 cut(s) 235, 250, 256, 734, 807, 1267
SchI GAGTC 3 cut(s) 532, 1087, 1389
ScrFI CCNGG 1 cut(s) 688
SduI GDGCHC 1 cut(s) 1374
SfaNI GCATC 2 cut(s) 1048, 1287
Sfr274I CTCGAG 1 cut(s) 941
SfuI TTCGAA 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 941
SmiMI CAYNNNNRTG 3 cut(s) 362, 1070, 1321
SmlI CTYRAG 6 cut(s) 176, 389, 473, 542, 833, 941
SmoI CTYRAG 6 cut(s) 176, 389, 473, 542, 833, 941
SpeI ACTAGT 1 cut(s) 1157
Sse9I AATT 9 cut(s) 69, 453, 493, 626, 664, 792, 844, 946, 1199
SsiI CCGC 2 cut(s) 866, 1024
SspMI CTAG 4 cut(s) 335, 959, 1130, 1158
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 1 cut(s) 1369
TaiI ACGT 1 cut(s) 519
TaqI TCGA 7 cut(s) 423, 700, 825, 897, 932, 942, 1227
TaqII GACCGA 1 cut(s) 683
TasI AATT 9 cut(s) 69, 453, 493, 626, 664, 792, 844, 946, 1199
TfiI GAWTC 7 cut(s) 168, 197, 671, 923, 1126, 1222, 1330
Tru1I TTAA 9 cut(s) 134, 161, 390, 492, 804, 843, 890, 1197, 1426
Tru9I TTAA 9 cut(s) 134, 161, 390, 492, 804, 843, 890, 1197, 1426
TseFI GTSAC 1 cut(s) 1153
TseI GCWGC 3 cut(s) 289, 773, 852
Tsp45I GTSAC 1 cut(s) 1153
TspDTI ATGAA 4 cut(s) 17, 343, 395, 974
TspGWI ACGGA 2 cut(s) 147, 1202
Vha464I CTTAAG 1 cut(s) 389
VneI GTGCAC 1 cut(s) 1370
VspI ATTAAT 2 cut(s) 134, 492
XapI RAATTY 3 cut(s) 626, 664, 1199
XbaI TCTAGA 2 cut(s) 958, 1129
XceI RCATGY 1 cut(s) 1069
XhoI CTCGAG 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 4 cut(s) 335, 959, 1130, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.