AT3G58980

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
21794445 .. 21797006
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58980.1

Sequence Viewer

Length: 1785 bp
ATGGATAGGATTAGCAATCTACCAAATGAGATCATTTGTCACATTGTATCTTTCCTTTCGGCAAAGGAAGCTGCTTTCGCATCGATTCTGTCAAAGAGGTGGCGGAATCTCTTTACCATTGTAATAAAACTTCAGTTTGATGACTCAGTCAAGAATGAAGGGAGTTTGAAGGATTTTGTCGATGGAGTATTGGCTCTGCCTACCAGTTCTCGTGTAAGGAGTTGCTCTCTAGAATGTCGAAGAGAGTTTGATCCGACTCATTATGATGATTTCAATCGTTGTATATGTGCTTTGCTGAAGCGTGGTATCTTGGATCTTAAACTAGACATATGTGCTGGGAGACGATATTCACTACCACTTGAGGTTTTCACTTGCAAAACACTCGTTAAGCTGGAACTTGGGAGTGATTTTGGTGGCTTTGTTGTTGATCTTGTCCCTGAGGATGCTTTTCTACCAGCGCTTGAGACCCTCCTTCTTAACTATATTCGGTTTAAAGATCTCCGCCGTTGTGCGTTTGAAAAGCTTCTTTCTGCTTGCCTTGTGCTCAAGGAACTAGTCATACATAATATGGAGTGGGAACGTTGGAAATGGTCTGGCAACATATCCAGTCCAACCCTTGAAAGACTTACTATTAGTCATGTAGATCTCTATGAGTGTGAGTTTACGAGAATAAATTTAGATACTCCGAATCTTACCTATTTAGAGTTGTCTGATGCTGTACCGGATGACTATCCAATTGTTAATCTTGACTCCCTTGTTGAAGTTAAGCTCGATCTTACGTTGATGGTAGATCACAAGTACCATGGATATGTAGATGACAACGACACGATTTCTAGCAATCCAACAAATCTGATTAATGGGTTAAGAAATGTTGAAATCATGAACTTGCAATCTCCTAATACTTTTCAGGCATTTTCTTACTTCCATGAAGCAATACCGGTGTTTAAAAACCTTTATCATTTAACTATCACAAATAATGATACTGTAATTGGGTTCTGTTGGGAATTTCTACCATTTGTGATAAAGAAGTGTCCAAATCTAAAGACTCTTGTCATCGATGGTCCATTGCACTACAATGAAGACCGACCCAAATCTGTTTGCCACTGTTTGTCGGGATATTCTTTCTTATTGTCATGTCCTTTAGAGGTCTTACAGATAACCGACTATAGTGGAACTCCTGGAGAGGTGGAGCAATTGAAGCATTTTCTAGAGAAACTGTCCGGTCTCAAGTTGGTGAAACTTCATTCTCTTACAAGATTTGGTAGCGACAAGAAAAAGTTATTAATGCTTCCCAGAGCTTCCTCTAAGTGCAAGATCAAGCATTATGATTCTCTAGAGAATGCTCTTCTTCCATCGCTCAAGACTCTCATTCTTGATTCAGTTAAGTTCTATGATCGTTGTGGTTGTTGTGCATTCCAAAAGCTTCTTTCTGCTTGCCCTGTGCTTGTGGAATCAGTGATGCGTAATCTGGAATGGGAAGATTGGGAATGGTCTGGCTGTGCGTCCAGTCAAACCCTTGAGAGACTTACTATTGACCATAGATATTGGGCTGAACATAACTTGGAGAGCTTTACTTTTGATACTCCGAGTCTTACCTACTTAGACTACAATGCTCATGTTCCGGGATCGTATCCAACTGTTAATCTTGACTCCCTTGTCGAGGCTAAGCTCAATCTTGGTTTTACAACTGATCTTGTAGAAGATGATGACGATCCCTTTACCAGCGATCCAACCAATCTAATCAAAGGGTTAAGAAATGTTGAGATCTTGAGACTATGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

594

Amino Acids

67.98

Weight (kDa)

5.36

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 1.2e-08 F-box domain
LRR_At5g56370 PF24758 98 - 242 6e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1655
AciI CCGC 2 cut(s) 103, 502
AclI AACGTT 1 cut(s) 580
AclWI GGATC 5 cut(s) 245, 321, 1633, 1706, 1721
AcsI RAATTY 2 cut(s) 673, 1004
AcuI CTGAAG 2 cut(s) 116, 317
AfaI GTAC 2 cut(s) 720, 800
AfeI AGCGCT 1 cut(s) 459
AfiI CCNNNNNNNGG 1 cut(s) 1660
AgeI ACCGGT 1 cut(s) 937
AgsI TTSAA 7 cut(s) 169, 274, 518, 620, 761, 875, 1198
AhlI ACTAGT 1 cut(s) 553
AjnI CCWGG 1 cut(s) 1177
AluBI AGCT 8 cut(s) 71, 391, 523, 769, 1298, 1423, 1569, 1669
AluI AGCT 8 cut(s) 71, 391, 523, 769, 1298, 1423, 1569, 1669
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 5 cut(s) 334, 458, 1229, 1516, 1765
AlwI GGATC 5 cut(s) 245, 321, 1633, 1706, 1721
Aor51HI AGCGCT 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 673, 1004
AseI ATTAAT 2 cut(s) 855, 1283
AsiGI ACCGGT 1 cut(s) 937
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 1061
AsuC2I CCSGG 1 cut(s) 1623
AsuHPI GGTGA 1 cut(s) 1246
AvaII GGWCC 1 cut(s) 1061
AxyI CCTNAGG 1 cut(s) 438
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 58
BccI CCATC 4 cut(s) 176, 778, 1052, 1360
BceAI ACGGC 1 cut(s) 489
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 1 cut(s) 1179
BciVI GTATCC 1 cut(s) 1641
BcnI CCSGG 1 cut(s) 1623
BcoDI GTCTC 5 cut(s) 334, 458, 1229, 1516, 1765
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 6 cut(s) 230, 323, 554, 834, 1208, 1334
BfmI CTRYAG 1 cut(s) 1165
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 1 cut(s) 1641
BglII AGATCT 3 cut(s) 496, 643, 1764
BisI GCNGC 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 1665
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 1179, 1623
Bme18I GGWCC 1 cut(s) 1061
BmgT120I GGNCC 1 cut(s) 1061
BmrFI CCNGG 2 cut(s) 1179, 1623
BmsI GCATC 4 cut(s) 89, 433, 703, 1449
BoxI GACNNNNGTC 1 cut(s) 1049
BpiI GAAGAC 1 cut(s) 1086
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 1200
Bpu1102I GCTNAGC 1 cut(s) 1665
BpuEI CTTGAG 6 cut(s) 380, 482, 530, 1211, 1343, 1538
BpuMI CCSGG 1 cut(s) 1623
Bsa29I ATCGAT 2 cut(s) 83, 1056
BsaBI GATNNNNATC 3 cut(s) 273, 729, 1710
BsaI GGTCTC 2 cut(s) 458, 1229
BsaJI CCNNGG 1 cut(s) 802
BsaWI WCCGGW 3 cut(s) 721, 937, 1220
Bsc4I CCNNNNNNNGG 1 cut(s) 1660
Bse118I RCCGGY 1 cut(s) 937
Bse1I ACTGG 3 cut(s) 204, 606, 1506
Bse21I CCTNAGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 1064
Bse8I GATNNNNATC 3 cut(s) 273, 729, 1710
BseBI CCWGG 1 cut(s) 1179
BseCI ATCGAT 2 cut(s) 83, 1056
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 3 cut(s) 448, 730, 1785
BseJI GATNNNNATC 3 cut(s) 273, 729, 1710
BseLI CCNNNNNNNGG 1 cut(s) 1660
BseMI GCAATG 1 cut(s) 1064
BseMII CTCAG 2 cut(s) 159, 429
BseNI ACTGG 3 cut(s) 204, 606, 1506
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 335
BshTI ACCGGT 1 cut(s) 937
BshVI ATCGAT 2 cut(s) 83, 1056
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 4 cut(s) 722, 938, 1221, 1622
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 1660
BsmAI GTCTC 5 cut(s) 334, 458, 1229, 1516, 1765
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 1345, 1412
Bso31I GGTCTC 2 cut(s) 458, 1229
Bsp1286I GDGCHC 1 cut(s) 546
Bsp1720I GCTNAGC 1 cut(s) 1665
Bsp19I CCATGG 1 cut(s) 802
BspACI CCGC 2 cut(s) 103, 502
BspCNI CTCAG 2 cut(s) 158, 430
BspDI ATCGAT 2 cut(s) 83, 1056
BspHI TCATGA 1 cut(s) 879
BspPI GGATC 5 cut(s) 245, 321, 1633, 1706, 1721
BspQI GCTCTTC 1 cut(s) 1350
BspTNI GGTCTC 2 cut(s) 458, 1229
BsrDI GCAATG 1 cut(s) 1064
BsrFI RCCGGY 1 cut(s) 937
BsrI ACTGG 3 cut(s) 204, 606, 1506
BssAI RCCGGY 1 cut(s) 937
BssECI CCNNGG 1 cut(s) 802
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 802
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 1179
Bst4CI ACNGT 4 cut(s) 985, 1106, 1218, 1639
Bst6I CTCTTC 2 cut(s) 235, 1350
BstC8I GCNNGC 2 cut(s) 535, 1435
BstDEI CTNAG 5 cut(s) 145, 438, 1305, 1600, 1665
BstDSI CCRYGG 1 cut(s) 802
BstENI CCTNNNNNAGG 1 cut(s) 1658
BstF5I GGATG 3 cut(s) 448, 730, 1785
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstMAI GTCTC 5 cut(s) 334, 458, 1229, 1516, 1765
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 1198
BstNI CCWGG 1 cut(s) 1179
BstPAI GACNNNNGTC 1 cut(s) 1049
BstSCI CCNGG 2 cut(s) 1177, 1621
BstSFI CTRYAG 1 cut(s) 1165
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 4 cut(s) 313, 496, 643, 1764
BstYI RGATCY 4 cut(s) 313, 496, 643, 1764
Bsu15I ATCGAT 2 cut(s) 83, 1056
Bsu36I CCTNAGG 1 cut(s) 438
BsuI GTATCC 1 cut(s) 1641
BsuTUI ATCGAT 2 cut(s) 83, 1056
BtgI CCRYGG 1 cut(s) 802
BtgZI GCGATG 1 cut(s) 1338
BtsCI GGATG 3 cut(s) 448, 730, 1785
BtsIMutI CAGTG 2 cut(s) 1102, 1461
Cac8I GCNNGC 2 cut(s) 535, 1435
CciI TCATGA 1 cut(s) 879
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 937
Cfr13I GGNCC 1 cut(s) 1061
ClaI ATCGAT 2 cut(s) 83, 1056
CseI GACGC 1 cut(s) 1491
Csp6I GTAC 2 cut(s) 719, 799
CspAI ACCGGT 1 cut(s) 937
CviAII CATG 6 cut(s) 638, 803, 880, 926, 1134, 1616
CviQI GTAC 2 cut(s) 719, 799
DdeI CTNAG 5 cut(s) 145, 438, 1305, 1600, 1665
DraI TTTAAA 2 cut(s) 493, 946
DrdI GACNNNNNNGTC 1 cut(s) 1655
DseDI GACNNNNNNGTC 1 cut(s) 1655
Eam1104I CTCTTC 2 cut(s) 235, 1350
EarI CTCTTC 2 cut(s) 235, 1350
EciI GGCGGA 2 cut(s) 118, 491
Eco130I CCWWGG 1 cut(s) 802
Eco31I GGTCTC 2 cut(s) 458, 1229
Eco47I GGWCC 1 cut(s) 1061
Eco47III AGCGCT 1 cut(s) 459
Eco57I CTGAAG 2 cut(s) 116, 317
Eco81I CCTNAGG 1 cut(s) 438
EcoNI CCTNNNNNAGG 1 cut(s) 1658
EcoRII CCWGG 1 cut(s) 1177
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 6 cut(s) 641, 806, 883, 929, 1137, 1619
FaqI GGGAC 1 cut(s) 419
FatI CATG 6 cut(s) 637, 802, 879, 925, 1133, 1615
FauNDI CATATG 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 455, 737
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 6 cut(s) 230, 323, 554, 834, 1208, 1334
GlaI GCGC 1 cut(s) 459
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 1200
HaeII RGCGCY 1 cut(s) 461
HapII CCGG 4 cut(s) 722, 938, 1221, 1622
HgaI GACGC 1 cut(s) 1491
HhaI GCGC 1 cut(s) 460
Hin1II CATG 6 cut(s) 641, 806, 883, 929, 1137, 1619
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 2 cut(s) 521, 1421
HpaII CCGG 4 cut(s) 722, 938, 1221, 1622
HphI GGTGA 1 cut(s) 1246
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 5 cut(s) 255, 687, 712, 852, 1587
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 3 cut(s) 152, 163, 482
HpyCH4III ACNGT 4 cut(s) 985, 1106, 1218, 1639
HpyCH4IV ACGT 2 cut(s) 580, 779
HpyCH4V TGCA 5 cut(s) 375, 889, 1069, 1311, 1412
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 1198
HpyF3I CTNAG 5 cut(s) 145, 438, 1305, 1600, 1665
HpySE526I ACGT 2 cut(s) 580, 779
Hsp92II CATG 6 cut(s) 641, 806, 883, 929, 1137, 1619
HspAI GCGC 1 cut(s) 458
LguI GCTCTTC 1 cut(s) 1350
LmnI GCTCC 1 cut(s) 1189
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 4 cut(s) 89, 433, 703, 1449
MaeI CTAG 6 cut(s) 230, 323, 554, 834, 1208, 1334
MaeII ACGT 2 cut(s) 580, 779
MaeIII GTNAC 1 cut(s) 38
MboII GAAGA 6 cut(s) 252, 1091, 1337, 1340, 1490, 1712
MfeI CAATTG 2 cut(s) 735, 1193
MflI RGATCY 4 cut(s) 313, 496, 643, 1764
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 5 cut(s) 673, 735, 987, 1004, 1193
MlyI GAGTC 7 cut(s) 137, 250, 743, 1039, 1357, 1597, 1643
MmeI TCCRAC 6 cut(s) 278, 563, 635, 866, 1658, 1754
MnlI CCTC 8 cut(s) 90, 355, 433, 479, 1138, 1177, 1312, 1654
MroXI GAANNNNTTC 1 cut(s) 522
MslI CAYNNNNRTG 3 cut(s) 264, 807, 1074
MspI CCGG 4 cut(s) 722, 938, 1221, 1622
MspR9I CCNGG 2 cut(s) 1179, 1623
MunI CAATTG 2 cut(s) 735, 1193
Mva1269I GAATGC 2 cut(s) 1345, 1412
MvaI CCWGG 1 cut(s) 1179
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 1198
NciI CCSGG 1 cut(s) 1623
NcoI CCATGG 1 cut(s) 802
NdeI CATATG 1 cut(s) 329
NlaIII CATG 6 cut(s) 641, 806, 883, 929, 1137, 1619
NmuCI GTSAC 1 cut(s) 38
PagI TCATGA 1 cut(s) 879
PciSI GCTCTTC 1 cut(s) 1350
PctI GAATGC 2 cut(s) 1345, 1412
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 6 cut(s) 85, 106, 688, 1328, 1376, 1451
PflFI GACNNNGTC 1 cut(s) 146
PfoI TCCNGGA 2 cut(s) 1177, 1621
PinAI ACCGGT 1 cut(s) 937
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 7 cut(s) 137, 250, 743, 1039, 1357, 1596, 1643
PpsI GAGTC 7 cut(s) 137, 250, 743, 1039, 1357, 1596, 1643
PshAI GACNNNNGTC 1 cut(s) 1049
PshBI ATTAAT 2 cut(s) 855, 1283
Psp1406I AACGTT 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 1177
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 1177
PspPI GGNCC 1 cut(s) 1061
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PsuI RGATCY 4 cut(s) 313, 496, 643, 1764
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 720, 800
RsaNI GTAC 2 cut(s) 719, 799
RseI CAYNNNNRTG 3 cut(s) 264, 807, 1074
SapI GCTCTTC 1 cut(s) 1350
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 1061
SchI GAGTC 7 cut(s) 137, 250, 743, 1039, 1357, 1597, 1643
ScrFI CCNGG 2 cut(s) 1179, 1623
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 4 cut(s) 89, 433, 703, 1449
SfcI CTRYAG 1 cut(s) 1165
SinI GGWCC 1 cut(s) 1061
SmiMI CAYNNNNRTG 3 cut(s) 264, 807, 1074
SmlI CTYRAG 7 cut(s) 359, 461, 545, 1226, 1358, 1517, 1768
SmoI CTYRAG 7 cut(s) 359, 461, 545, 1226, 1358, 1517, 1768
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 5 cut(s) 673, 735, 987, 1004, 1193
SsiI CCGC 2 cut(s) 103, 502
SspMI CTAG 6 cut(s) 230, 323, 554, 834, 1208, 1334
StyD4I CCNGG 2 cut(s) 1177, 1621
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 4 cut(s) 985, 1106, 1218, 1639
TaiI ACGT 2 cut(s) 583, 782
TaqI TCGA 6 cut(s) 83, 180, 238, 771, 1056, 1659
TaqII GACCGA 1 cut(s) 1098
TasI AATT 5 cut(s) 673, 735, 987, 1004, 1193
TfiI GAWTC 6 cut(s) 85, 106, 688, 1328, 1376, 1451
TscAI CASTG 2 cut(s) 1109, 1461
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 5 cut(s) 171, 896, 942, 1092, 1232
TspRI CASTG 2 cut(s) 1109, 1461
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 1061
VspI ATTAAT 2 cut(s) 855, 1283
XagI CCTNNNNNAGG 1 cut(s) 1658
XapI RAATTY 2 cut(s) 673, 1004
XbaI TCTAGA 3 cut(s) 229, 1207, 1333
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 6 cut(s) 230, 323, 554, 834, 1208, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.