AT3G49150

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
18218858 .. 18220430
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49150.1

Sequence Viewer

Length: 1404 bp
ATGGATATATGTTGCAAAGATATAATTAGTGATCATTCAAAAAAAGATATAATTAGTGATCTACCAGAAGCTCTTATTTGCCACATCTTGTCATTCCTTCCCATAGAAGATTCGGCTTTGACTTCAGTACTTTCGAAAAAGTGGCAGCATCTATTTGCTTTCAGACCAAATCTTGAGTTTGATGACGCTGTAGTATATCTTAATCCTGACGGAGAAAGAAATGAGACAATATTTGAGAATTTCGTTGATAGAGTATTGAGTTTGCAGGGTGATTATCCTATCAACAAGTTCTCTCTAACATGCCGAGATTTTACTGATCCAACTTGTGTATCTCGTTGGATATCAAATGTGATGGAACGCGGGGTATCGGATCTTGATCTACGTTGTATTGTGTATTGGGATAATGGTACCATGCCTCCAGATATCTTTGTGAGCAAGGCACTGGTTCATCTGAGAATAGAAACTGGAAACGGTGCCTTCATTGATGTGGAAGATGTTTTTCTTCCAAACCTCAAGACTCTATATCTTAATAAAGTCTTGTTACGACACAGTGATAACGGCTTTGTGAAGCTTATTACTAGTTGTCATGTTCTTGAGGATTTATTTATTATGAATATATGTTGGGATGGTTATTTGAAGCGCTCTCTATCTTCTAAAACCCTCAAGAGGCTAACGTTCTTTTGTGAAGACGTCCATGCCGTAAATCCGGAGAGTGTTTCGTTTGATACACCCAATCTTGTCTACTTTGTATACCATGATTGCGTTGCAGACAAGTATAAAAATATGAATTTTGATTCACTTGTTTACGCTAGTATCTGTCTTCAAATGACATCTCATCAGCGTACACATGCAAGCTATGAACATTTGGTCGGTAATGCAACAGATTTTCTTTTGGGAATAAGCAATGTTCAGATCCTTGAATTATTTGCCAATACCATTGAGGTTTGTATTGTAATCCCTTCTTCTTCTTTTTTGGCTACATTGAAACAAAAAGAAGACAAACAAGTTAGTGTTACATGCCTTGCAGGATGGGAGTCATTGCCGGTTCTACTCAAAAACTGTCCAGATCTAGAAAGCCTTATCTTCGATGGGCTCCATCACAACGATACAATTAAATGTGAGGATGTTGACGGGTGTCTATGCAAATCTTCACGTGGCATTCCTAGTTGCCTATCATCAAGTCCGGTGCAGTTTCTAACGATATGGAAATTTGGTGAAATTTGTGATGACTATGATGACATGGAGAAGCAGATAGAGCTCGTCATGTATTTCCTGGAGACAATGCCGAATCTTGAAGAAATGAAATTGTTCTACGATACACAAATTTATGAAGATGTGATAAGCAAACTTCAGATGTTAGTAACCTCGTCGAAATGCACAGTCTATATAATCCCCGAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

467

Amino Acids

53.32

Weight (kDa)

4.75

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 52 1e-06 F-box domain
LRR_At5g56370 PF24758 111 - 256 7.9e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 693
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 2 cut(s) 407, 473
AccI GTMKAC 2 cut(s) 741, 750
AccII CGCG 1 cut(s) 360
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 1 cut(s) 360
AclI AACGTT 1 cut(s) 674
AclWI GGATC 3 cut(s) 311, 378, 907
AcsI RAATTY 5 cut(s) 238, 787, 1208, 1218, 1323
AcuI CTGAAG 2 cut(s) 108, 1334
AcvI CACGTG 1 cut(s) 1154
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 3 cut(s) 129, 409, 844
AfeI AGCGCT 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 666
AgsI TTSAA 6 cut(s) 39, 637, 824, 920, 985, 1295
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 1 cut(s) 1272
AluBI AGCT 4 cut(s) 71, 571, 855, 1258
AluI AGCT 4 cut(s) 71, 571, 855, 1258
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 2 cut(s) 218, 1271
AlwI GGATC 3 cut(s) 311, 378, 907
Ama87I CYCGRG 1 cut(s) 1394
Aor13HI TCCGGA 1 cut(s) 706
Aor51HI AGCGCT 1 cut(s) 641
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 5 cut(s) 238, 787, 1208, 1218, 1323
Asp700I GAANNNNTTC 1 cut(s) 1307
Asp718I GGTACC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 642
AsuHPI GGTGA 2 cut(s) 281, 1226
AsuII TTCGAA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 1394
BaeI ACNNNNGTAYC 4 cut(s) 312, 345, 796, 829
BanI GGYRCC 2 cut(s) 407, 473
BanII GRGCYC 2 cut(s) 1095, 1260
BbrPI CACGTG 1 cut(s) 1154
BbsI GAAGAC 3 cut(s) 693, 812, 1002
Bbv12I GWGCWC 1 cut(s) 1260
BbvI GCAGC 1 cut(s) 157
BccI CCATC 5 cut(s) 346, 620, 1023, 1082, 1104
BceAI ACGGC 2 cut(s) 574, 683
BciT130I CCWGG 1 cut(s) 1274
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 218, 1271
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 4 cut(s) 579, 810, 1070, 1164
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 643
BglII AGATCT 1 cut(s) 1066
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmcAI AGTACT 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 1274
BmeT110I CYCGRG 1 cut(s) 1394
BmiI GGNNCC 3 cut(s) 409, 475, 1094
BmrFI CCNGG 1 cut(s) 1274
BmsI GCATC 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 1134
BpiI GAAGAC 3 cut(s) 693, 812, 1002
BpmI CTGGAG 2 cut(s) 402, 1295
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 4 cut(s) 194, 497, 614, 647
BsaAI YACGTR 1 cut(s) 1154
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 1395
BsaWI WCCGGW 2 cut(s) 706, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 666
Bse118I RCCGGY 1 cut(s) 1042
Bse1I ACTGG 2 cut(s) 447, 469
Bse3DI GCAATG 2 cut(s) 910, 1037
Bse8I GATNNNNATC 1 cut(s) 375
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 1 cut(s) 1274
BseDI CCNNGG 1 cut(s) 1395
BseGI GGATG 3 cut(s) 631, 1034, 1129
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 666
BseMI GCAATG 2 cut(s) 910, 1037
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 447, 469
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 1208
Bsh1236I CGCG 1 cut(s) 360
BshNI GGYRCC 2 cut(s) 407, 473
BsiHKAI GWGCWC 1 cut(s) 1260
BsiHKCI CYCGRG 1 cut(s) 1394
BsiSI CCGG 3 cut(s) 707, 1043, 1184
BslI CCNNNNNNNGG 1 cut(s) 666
BsmAI GTCTC 2 cut(s) 218, 1271
BsmI GAATGC 1 cut(s) 1158
BsoBI CYCGRG 1 cut(s) 1394
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 1095, 1260
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
BspACI CCGC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 409, 475, 1094
BspPI GGATC 3 cut(s) 311, 378, 907
BspT104I TTCGAA 1 cut(s) 134
BspT107I GGYRCC 2 cut(s) 407, 473
BsrDI GCAATG 2 cut(s) 910, 1037
BsrFI RCCGGY 1 cut(s) 1042
BsrI ACTGG 2 cut(s) 447, 469
BssAI RCCGGY 1 cut(s) 1042
BssECI CCNNGG 1 cut(s) 1395
BssMI GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
BssNAI GTATAC 1 cut(s) 751
BssNI GRCGYC 1 cut(s) 690
Bst1107I GTATAC 1 cut(s) 751
Bst2UI CCWGG 1 cut(s) 1274
Bst4CI ACNGT 4 cut(s) 473, 551, 1061, 1381
BstACI GRCGYC 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 1154
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 853
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 631, 1034, 1129
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 7 cut(s) 34, 61, 319, 373, 379, 915, 1069
BstMAI GTCTC 2 cut(s) 218, 1271
BstMBI GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
BstMWI GCNNNNNNNGC 1 cut(s) 1255
BstNI CCWGG 1 cut(s) 1274
BstNSI RCATGY 3 cut(s) 303, 851, 1020
BstPAI GACNNNNGTC 1 cut(s) 1134
BstSCI CCNGG 1 cut(s) 1272
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 3 cut(s) 693, 812, 1002
BstX2I RGATCY 3 cut(s) 370, 912, 1066
BstYI RGATCY 3 cut(s) 370, 912, 1066
BstZ17I GTATAC 1 cut(s) 751
BtsCI GGATG 3 cut(s) 631, 1034, 1129
BtsIMutI CAGTG 2 cut(s) 440, 556
Cac8I GCNNGC 1 cut(s) 853
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 1042
CseI GACGC 1 cut(s) 194
Csp6I GTAC 3 cut(s) 128, 408, 843
CviAII CATG 9 cut(s) 300, 412, 587, 695, 755, 848, 1017, 1240, 1264
CviQI GTAC 3 cut(s) 128, 408, 843
DdeI CTNAG 1 cut(s) 452
DpnI GATC 7 cut(s) 33, 60, 318, 372, 378, 914, 1068
DpnII GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
Ecl136II GAGCTC 1 cut(s) 1258
Eco24I GRGCYC 2 cut(s) 1095, 1260
Eco32I GATATC 2 cut(s) 342, 424
Eco47III AGCGCT 1 cut(s) 641
Eco53kI GAGCTC 1 cut(s) 1258
Eco57I CTGAAG 2 cut(s) 108, 1334
Eco72I CACGTG 1 cut(s) 1154
Eco88I CYCGRG 1 cut(s) 1394
EcoICRI GAGCTC 1 cut(s) 1258
EcoRII CCWGG 1 cut(s) 1272
EcoRV GATATC 2 cut(s) 342, 424
EcoT38I GRGCYC 2 cut(s) 1095, 1260
FaeI CATG 9 cut(s) 303, 415, 590, 698, 758, 851, 1020, 1243, 1267
FatI CATG 9 cut(s) 299, 411, 586, 694, 754, 847, 1016, 1239, 1263
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 31
FblI GTMKAC 2 cut(s) 741, 750
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 3 cut(s) 638, 1041, 1136
FriOI GRGCYC 2 cut(s) 1095, 1260
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 4 cut(s) 579, 810, 1070, 1164
GlaI GCGC 1 cut(s) 641
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 402, 1295
HaeII RGCGCY 1 cut(s) 643
HapII CCGG 3 cut(s) 707, 1043, 1184
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 9 cut(s) 303, 415, 590, 698, 758, 851, 1020, 1243, 1267
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 110, 517, 794, 1034, 1288
HpaII CCGG 3 cut(s) 707, 1043, 1184
HphI GGTGA 2 cut(s) 281, 1226
Hpy166II GTNNAC 5 cut(s) 742, 751, 805, 845, 1129
Hpy188I TCNGA 5 cut(s) 164, 370, 453, 912, 1353
Hpy8I GTNNAC 5 cut(s) 742, 751, 805, 845, 1129
Hpy99I CGWCG 1 cut(s) 1372
HpyAV CCTTC 3 cut(s) 107, 487, 969
HpyCH4III ACNGT 4 cut(s) 473, 551, 1061, 1381
HpyCH4IV ACGT 4 cut(s) 382, 674, 690, 1153
HpyCH4V TGCA 9 cut(s) 15, 265, 767, 851, 878, 1025, 1143, 1189, 1377
HpyF10VI GCNNNNNNNGC 1 cut(s) 1255
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 4 cut(s) 382, 674, 690, 1153
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 9 cut(s) 303, 415, 590, 698, 758, 851, 1020, 1243, 1267
HspAI GCGC 1 cut(s) 640
Kpn2I TCCGGA 1 cut(s) 706
KpnI GGTACC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
LmnI GCTCC 1 cut(s) 1098
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 157
MaeI CTAG 4 cut(s) 579, 810, 1070, 1164
MaeII ACGT 4 cut(s) 382, 674, 690, 1153
MaeIII GTNAC 3 cut(s) 540, 1012, 1360
MalI GATC 7 cut(s) 33, 60, 318, 372, 378, 914, 1068
MboI GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
MflI RGATCY 3 cut(s) 370, 912, 1066
MhlI GDGCHC 2 cut(s) 1095, 1260
MlyI GAGTC 2 cut(s) 511, 1043
MmeI TCCRAC 2 cut(s) 317, 344
MnlI CCTC 9 cut(s) 426, 521, 589, 660, 671, 934, 1114, 1375, 1390
MroI TCCGGA 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 1307
MseI TTAA 3 cut(s) 201, 528, 1113
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 3 cut(s) 707, 1043, 1184
MspR9I CCNGG 1 cut(s) 1274
Mva1269I GAATGC 1 cut(s) 1158
MvaI CCWGG 1 cut(s) 1274
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 1255
NdeII GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
NlaIII CATG 9 cut(s) 303, 415, 590, 698, 758, 851, 1020, 1243, 1267
NlaIV GGNNCC 3 cut(s) 409, 475, 1094
NmeAIII GCCGAG 1 cut(s) 329
NspI RCATGY 3 cut(s) 303, 851, 1020
NspV TTCGAA 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PctI GAATGC 1 cut(s) 1158
PdmI GAANNNNTTC 1 cut(s) 1307
PfeI GAWTC 3 cut(s) 110, 794, 1288
PfoI TCCNGGA 1 cut(s) 1272
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 2 cut(s) 511, 1042
PmaCI CACGTG 1 cut(s) 1154
PmlI CACGTG 1 cut(s) 1154
PpsI GAGTC 2 cut(s) 511, 1042
Ppu21I YACGTR 1 cut(s) 1154
PshAI GACNNNNGTC 1 cut(s) 1134
Psp124BI GAGCTC 1 cut(s) 1260
Psp1406I AACGTT 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 1272
PspCI CACGTG 1 cut(s) 1154
PspGI CCWGG 1 cut(s) 1272
PspN4I GGNNCC 3 cut(s) 409, 475, 1094
PsuI RGATCY 3 cut(s) 370, 912, 1066
RsaI GTAC 3 cut(s) 129, 409, 844
RsaNI GTAC 3 cut(s) 128, 408, 843
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 1260
SaqAI TTAA 3 cut(s) 201, 528, 1113
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 7 cut(s) 31, 58, 316, 370, 376, 912, 1066
ScaI AGTACT 1 cut(s) 129
SchI GAGTC 2 cut(s) 511, 1043
ScrFI CCNGG 1 cut(s) 1274
SduI GDGCHC 2 cut(s) 1095, 1260
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 4 cut(s) 173, 512, 593, 662
SmoI CTYRAG 4 cut(s) 173, 512, 593, 662
SpeI ACTAGT 1 cut(s) 578
SsiI CCGC 1 cut(s) 360
SspI AATATT 1 cut(s) 231
SspMI CTAG 4 cut(s) 579, 810, 1070, 1164
SstI GAGCTC 1 cut(s) 1260
StyD4I CCNGG 1 cut(s) 1272
TaaI ACNGT 4 cut(s) 473, 551, 1061, 1381
TaiI ACGT 4 cut(s) 385, 677, 693, 1156
TaqI TCGA 3 cut(s) 134, 1086, 1370
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 3 cut(s) 110, 794, 1288
Tru1I TTAA 3 cut(s) 201, 528, 1113
Tru9I TTAA 3 cut(s) 201, 528, 1113
TscAI CASTG 2 cut(s) 447, 556
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 7 cut(s) 437, 469, 626, 800, 873, 1316, 1344
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 2 cut(s) 447, 556
XapI RAATTY 5 cut(s) 238, 787, 1208, 1218, 1323
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 3 cut(s) 303, 851, 1020
XmiI GTMKAC 2 cut(s) 741, 750
XmnI GAANNNNTTC 1 cut(s) 1307
XspI CTAG 4 cut(s) 579, 810, 1070, 1164
ZraI GACGTC 1 cut(s) 691
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.