AT5G15620

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000813
Physical Location & Seq
Forward (+)
5082465 .. 5084136
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15620.1

Sequence Viewer

Length: 1323 bp
ATGGATAGATTCAGCAATTTACCAGACGATGTTATTTACCACATCGTTTCTTTTCTTTCGGCAAAGGAGGCTACGTGCTTAAAGTTTGTCTCCAAGAACTTTCAGAATTTGGTTACTATCAAACGAAACGTTGTTTTCCATCATTGGGAAAGTTTCAAGAATTTTGTTGATGGATTATTAGCTGAACCTGCCAGTTACCGTATAAAGAGATTCTCTCTGAAATTGGTGTCTATGGATTTTGCTCAGTATAATATTGTCAACGATTGTCTTTGCAATGTGTTGAAGCGAGGTGTCTTGGATCTTGAGCTCGACATTAACGTCAAAGAAGATTACATACTTCCTTCTGATGTCTTCACTTGCAAGACAGTTGTTAGACTGAAACTAGGGTGTGGTTTTGTTATTGACATTCTCCCTAAGAATGCTTTGCTTCCAGCTCTTAAGACTCTCATTCTTGATTCAGTTCGGTTCTACGCCAGTGATGGTTGTGCGTTCACAAGGCTTCTCTCTGCTTCCCCTGTGCTTGAAGAGTTAGTTATAGATCGTCTCAACTGGGAACATTGGAAAGGTTCTCGCTTTGTGTCTAGTCCGACTCTTAAGAGACTTACTCTTCGGCGTAAAGAATGGGAACCCGAACCTGAAACTTGGACTGATTTTGAGAGCGTTAGTTTTGATACTCCGAGTCTTGCTTACTTAAAATACAAAGATGTTATTCCATATGGGTATCCAATTGTTAATCTCAACTCCATTGTTGAAGCTAGGCTCACTCTTCCTAGGGAAGTAGAGTACGACTATTGGCTTAACAGATCTGCTGATCCTTCGAATTTGATTAGAGGGCTAAAAAATGTTGAGATTCTGAGCATCAAGGTTCTTCATACGATGGACCTGTTATTTTATAACTTCAAGGAAGCAGTCCCAGTGTTTGAAAACTTGATTCATTTGTCGGTTACCAGTGAAGCAGATTTCTGTTGGGATCCTCTGCAAATTCTGCTTGAGAAATCTCCAAATCTAAAGACTCTCACCATTGAGGGTCCCTTGCACTATAATTTTTATGAAAAACTGGATTTGGAAGCTGTTTGCGAATGTTTGTTGGGGTATTCTTTCCTGTTGTCCTGCCCTATTAAGGTCCTCAAGATAACCGAGTTCGTAGGAGATATCGGAGAGATAGTGCAAATGAAACATGTCTTGGGGAAATTGCCGTGTCTTGAGCTGTTGGAAGTTCATGTTCAGGCAAGAAGAGATGACAAAAAGCTGCAGATCATGGCGGATCTCTTAATGCTTCCCAGAACTTCATCCAAATGCAAGGTCAAGGTCCATTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

440

Amino Acids

50.7

Weight (kDa)

6.39

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 42 4.7e-08 F-box domain
LRR_At5g56370 PF24758 94 - 206 2.1e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 145 - 172 8.5e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 1 cut(s) 1262
AclI AACGTT 1 cut(s) 129
AclWI GGATC 5 cut(s) 306, 806, 965, 978, 1272
AcsI RAATTY 4 cut(s) 106, 160, 820, 981
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 2 cut(s) 145, 1120
AflII CTTAAG 2 cut(s) 437, 593
AflIII ACRYGT 1 cut(s) 1177
AgsI TTSAA 6 cut(s) 157, 283, 524, 752, 901, 923
AjuI GAANNNNNNNTTGG 2 cut(s) 1166, 1198
AluBI AGCT 7 cut(s) 182, 307, 434, 755, 1070, 1207, 1249
AluI AGCT 7 cut(s) 182, 307, 434, 755, 1070, 1207, 1249
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 3 cut(s) 94, 548, 592
AlwI GGATC 5 cut(s) 306, 806, 965, 978, 1272
ApeKI GCWGC 1 cut(s) 1249
ApoI RAATTY 4 cut(s) 106, 160, 820, 981
ArsI GACNNNNNNTTYG 4 cut(s) 591, 623, 1287, 1319
AspA2I CCTAGG 1 cut(s) 770
AspS9I GGNCC 4 cut(s) 880, 1028, 1123, 1309
AsuHPI GGTGA 1 cut(s) 1009
AsuII TTCGAA 1 cut(s) 818
AvaII GGWCC 4 cut(s) 880, 1028, 1123, 1309
AvrII CCTAGG 1 cut(s) 770
BamHI GGATCC 1 cut(s) 970
BanII GRGCYC 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 1236
BccI CCATC 4 cut(s) 147, 164, 473, 871
BceAI ACGGC 1 cut(s) 1180
BciVI GTATCC 1 cut(s) 732
BcoDI GTCTC 3 cut(s) 94, 548, 592
BfaI CTAG 4 cut(s) 383, 582, 756, 771
BfmI CTRYAG 1 cut(s) 1250
BfrI CTTAAG 2 cut(s) 437, 593
BfuAI ACCTGC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 732
BglII AGATCT 1 cut(s) 803
BisI GCNGC 1 cut(s) 1250
BlnI CCTAGG 1 cut(s) 770
BlsI GCNGC 1 cut(s) 1251
Bme18I GGWCC 4 cut(s) 880, 1028, 1123, 1309
BmgT120I GGNCC 4 cut(s) 880, 1028, 1123, 1309
BmiI GGNNCC 4 cut(s) 627, 972, 1029, 1030
BmrI ACTGGG 2 cut(s) 559, 908
BmsI GCATC 1 cut(s) 867
BmuI ACTGGG 2 cut(s) 559, 908
BpiI GAAGAC 1 cut(s) 343
BplI GAGNNNNNCTC 4 cut(s) 199, 231, 589, 621
Bpu14I TTCGAA 1 cut(s) 818
BpuEI CTTGAG 4 cut(s) 323, 1010, 1112, 1223
BsaAI YACGTR 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 770
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 1149, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 1120
Bse1I ACTGG 6 cut(s) 192, 474, 554, 914, 948, 1062
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 770
BseGI GGATG 1 cut(s) 1289
BseLI CCNNNNNNNGG 2 cut(s) 145, 1120
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 257, 845
BseNI ACTGG 6 cut(s) 192, 474, 554, 914, 948, 1062
BseXI GCAGC 1 cut(s) 1236
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 2 cut(s) 896, 1014
BslI CCNNNNNNNGG 2 cut(s) 145, 1120
BsmAI GTCTC 3 cut(s) 94, 548, 592
BsmBI CGTCTC 1 cut(s) 548
BsmFI GGGAC 2 cut(s) 896, 1014
BsmI GAATGC 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
BspACI CCGC 1 cut(s) 1262
BspCNI CTCAG 2 cut(s) 256, 846
BspLI GGNNCC 4 cut(s) 627, 972, 1029, 1030
BspMAI CTGCAG 1 cut(s) 1254
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 5 cut(s) 306, 806, 965, 978, 1272
BspT104I TTCGAA 1 cut(s) 818
BspTI CTTAAG 2 cut(s) 437, 593
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 6 cut(s) 192, 474, 554, 914, 948, 1062
BssECI CCNNGG 1 cut(s) 770
BssMI GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
BssT1I CCWWGG 1 cut(s) 770
Bst4CI ACNGT 2 cut(s) 200, 367
Bst6I CTCTTC 4 cut(s) 519, 612, 771, 1228
BstAFI CTTAAG 2 cut(s) 437, 593
BstAPI GCANNNNNTGC 1 cut(s) 985
BstBAI YACGTR 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 818
BstDEI CTNAG 3 cut(s) 243, 414, 854
BstEII GGTNACC 1 cut(s) 943
BstF5I GGATG 1 cut(s) 1289
BstKTI GATC 7 cut(s) 301, 541, 806, 814, 973, 1257, 1267
BstMAI GTCTC 3 cut(s) 94, 548, 592
BstMBI GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
BstMWI GCNNNNNNNGC 3 cut(s) 68, 188, 985
BstNSI RCATGY 1 cut(s) 1181
BstPI GGTNACC 1 cut(s) 943
BstSFI CTRYAG 1 cut(s) 1250
BstV1I GCAGC 1 cut(s) 1236
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 4 cut(s) 298, 803, 970, 1264
BstYI RGATCY 4 cut(s) 298, 803, 970, 1264
BsuI GTATCC 1 cut(s) 732
BtsCI GGATG 1 cut(s) 1289
BtsIMutI CAGTG 3 cut(s) 481, 921, 955
BveI ACCTGC 1 cut(s) 196
Cfr13I GGNCC 4 cut(s) 880, 1028, 1123, 1309
Csp6I GTAC 1 cut(s) 784
CviAII CATG 3 cut(s) 1178, 1220, 1258
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 3 cut(s) 243, 414, 854
DpnI GATC 7 cut(s) 300, 540, 805, 813, 972, 1256, 1266
DpnII GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 4 cut(s) 519, 612, 771, 1228
EarI CTCTTC 4 cut(s) 519, 612, 771, 1228
EciI GGCGGA 1 cut(s) 1277
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 770
Eco24I GRGCYC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 1153
Eco47I GGWCC 4 cut(s) 880, 1028, 1123, 1309
Eco53kI GAGCTC 1 cut(s) 307
Eco91I GGTNACC 1 cut(s) 943
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 2 cut(s) 1028, 1123
EcoO65I GGTNACC 1 cut(s) 943
EcoRV GATATC 1 cut(s) 1153
EcoT14I CCWWGG 1 cut(s) 770
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 770
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 3 cut(s) 1181, 1223, 1261
FaqI GGGAC 2 cut(s) 896, 1014
FatI CATG 3 cut(s) 1177, 1219, 1257
FauNDI CATATG 1 cut(s) 715
Fnu4HI GCNGC 1 cut(s) 1250
FokI GGATG 1 cut(s) 1276
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 1250
FspBI CTAG 4 cut(s) 383, 582, 756, 771
GluI GCNGC 1 cut(s) 1250
Hin1II CATG 3 cut(s) 1181, 1223, 1261
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 9 cut(s) 9, 210, 442, 455, 589, 679, 850, 931, 1012
HphI GGTGA 1 cut(s) 1009
Hpy166II GTNNAC 2 cut(s) 259, 492
Hpy188I TCNGA 7 cut(s) 105, 219, 346, 588, 678, 855, 1157
Hpy188III TCNNGA 6 cut(s) 157, 302, 452, 1129, 1202, 1320
Hpy8I GTNNAC 2 cut(s) 259, 492
HpyAV CCTTC 2 cut(s) 351, 825
HpyCH4III ACNGT 2 cut(s) 200, 367
HpyCH4IV ACGT 3 cut(s) 74, 129, 318
HpyCH4V TGCA 7 cut(s) 273, 360, 979, 1036, 1168, 1252, 1299
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 188, 985
HpyF3I CTNAG 3 cut(s) 243, 414, 854
HpySE526I ACGT 3 cut(s) 74, 129, 318
Hsp92II CATG 3 cut(s) 1181, 1223, 1261
KflI GGGWCCC 1 cut(s) 1028
Kzo9I GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
Lsp1109I GCAGC 1 cut(s) 1236
LweI GCATC 1 cut(s) 867
MaeI CTAG 4 cut(s) 383, 582, 756, 771
MaeII ACGT 3 cut(s) 74, 129, 318
MaeIII GTNAC 3 cut(s) 112, 194, 943
MalI GATC 7 cut(s) 300, 540, 805, 813, 972, 1256, 1266
MboI GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
MboII GAAGA 7 cut(s) 338, 343, 536, 599, 758, 860, 1245
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 4 cut(s) 298, 803, 970, 1264
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 9 cut(s) 16, 106, 160, 221, 726, 820, 981, 1042, 1190
MlyI GAGTC 4 cut(s) 436, 583, 688, 1006
MmeI TCCRAC 2 cut(s) 611, 1191
MnlI CCTC 6 cut(s) 61, 281, 824, 984, 1018, 1136
MseI TTAA 9 cut(s) 80, 315, 438, 594, 692, 732, 798, 1119, 1271
MslI CAYNNNNRTG 1 cut(s) 1294
MspCI CTTAAG 2 cut(s) 437, 593
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 68, 188, 985
NdeI CATATG 1 cut(s) 715
NdeII GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
NlaIII CATG 3 cut(s) 1181, 1223, 1261
NlaIV GGNNCC 4 cut(s) 627, 972, 1029, 1030
NspI RCATGY 1 cut(s) 1181
NspV TTCGAA 1 cut(s) 818
PciI ACATGT 1 cut(s) 1177
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 5 cut(s) 9, 210, 455, 850, 931
PkrI GCNGC 1 cut(s) 1251
PleI GAGTC 4 cut(s) 436, 583, 687, 1006
PpsI GAGTC 4 cut(s) 436, 583, 687, 1006
Ppu21I YACGTR 1 cut(s) 75
PpuMI RGGWCCY 2 cut(s) 1028, 1123
PscI ACATGT 1 cut(s) 1177
PsiI TTATAA 1 cut(s) 894
Psp124BI GAGCTC 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 129
Psp5II RGGWCCY 2 cut(s) 1028, 1123
PspEI GGTNACC 1 cut(s) 943
PspN4I GGNNCC 4 cut(s) 627, 972, 1029, 1030
PspPI GGNCC 4 cut(s) 880, 1028, 1123, 1309
PspPPI RGGWCCY 2 cut(s) 1028, 1123
PstI CTGCAG 1 cut(s) 1254
PsuI RGATCY 4 cut(s) 298, 803, 970, 1264
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 1 cut(s) 1294
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 9 cut(s) 80, 315, 438, 594, 692, 732, 798, 1119, 1271
SatI GCNGC 1 cut(s) 1250
Sau3AI GATC 7 cut(s) 298, 538, 803, 811, 970, 1254, 1264
Sau96I GGNCC 4 cut(s) 880, 1028, 1123, 1309
SchI GAGTC 4 cut(s) 436, 583, 688, 1006
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 1 cut(s) 867
SfcI CTRYAG 1 cut(s) 1250
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 4 cut(s) 880, 1028, 1123, 1309
SmiMI CAYNNNNRTG 1 cut(s) 1294
SmlI CTYRAG 6 cut(s) 302, 437, 593, 989, 1127, 1202
SmoI CTYRAG 6 cut(s) 302, 437, 593, 989, 1127, 1202
Sse9I AATT 9 cut(s) 16, 106, 160, 221, 726, 820, 981, 1042, 1190
SsiI CCGC 1 cut(s) 1262
SspI AATATT 1 cut(s) 253
SspMI CTAG 4 cut(s) 383, 582, 756, 771
SstI GAGCTC 1 cut(s) 309
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 200, 367
TaiI ACGT 3 cut(s) 77, 132, 321
TaqI TCGA 2 cut(s) 309, 818
TasI AATT 9 cut(s) 16, 106, 160, 221, 726, 820, 981, 1042, 1190
TfiI GAWTC 5 cut(s) 9, 210, 455, 850, 931
Tru1I TTAA 9 cut(s) 80, 315, 438, 594, 692, 732, 798, 1119, 1271
Tru9I TTAA 9 cut(s) 80, 315, 438, 594, 692, 732, 798, 1119, 1271
TscAI CASTG 3 cut(s) 481, 921, 955
TseI GCWGC 1 cut(s) 1249
TspDTI ATGAA 6 cut(s) 860, 923, 1065, 1187, 1208, 1278
TspRI CASTG 3 cut(s) 481, 921, 955
Vha464I CTTAAG 2 cut(s) 437, 593
VpaK11BI GGWCC 4 cut(s) 880, 1028, 1123, 1309
XapI RAATTY 4 cut(s) 106, 160, 820, 981
XceI RCATGY 1 cut(s) 1181
XmaJI CCTAGG 1 cut(s) 770
XspI CTAG 4 cut(s) 383, 582, 756, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.