AT3G59190

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
21884426 .. 21886808
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59190.1

Sequence Viewer

Length: 1167 bp
ATGAGTTCGAAAAGGATGGACTCTGGTTCGAAAGATATTATCAGCAATCTACCAGACGCTCTTCTTTGTCACGTCCTGTCTTTCCTTCCCACAACAGAAGCTGCTTCGACATCAGTTCTCGCTAAAAGGTGGAGGTTTCTCTTGGCGTTTGTACCAAATCTTGATTTAGACAACATGATCTATGACCGTCCTAAAATGGGTAGACGAAAAAGGCTAGAGCTGCGTAAAAGCTTTAAGCTTTTTGTGGATAGAGTTATGGCTTTGCAAGGGAATGCTCCGTTAAAAAAGTTCTCTCTTAGGTGCAAAATTGGTTCTGATCCATCTCGTGTCAATGGTTGGGTACTCAAAGTTTTGGACCGTGGTGTTGAAGAACTTGATCTGTACATTGCTTCGGAATACGAATATCCGCTGCCTCCAAAGGTCTTGATGACCAAGACATTGGTTAGCCTGAAAGTGTCAGGAACAGATGAGTTCACCATTGATGTTGGTGAGTTTTTTCTTCCAAAGCTTAAGACTTTGCATTTGAGTGCTATTTCGTTCGGTGATGAGGGTGGTCCTCCATTTGCCAAGCTGATTTCTGCTTGTCACGCCCTTGAGGAGCTAGTTATGATTAAAATGATGTGGGATTACTGGGAATTTTGCTCTGTGTCCAGCCCATCCCTCAAGAGAGTATCAATTGATTGTGAGAACATTGATGAGAATCCAAAGAGTGTATCCTTTGATACTCCAAATCTTGTCTATTTAGAATTTACTGATACTGTTGCGGTCAAGTATCCAAAAGTGAATTTTGATTCGCTTGTTGAAGCTAGCATAGGCCTTCGAATGACACCTGATCAGGTCTTTGACGCAAGAGATTTAGTAAATAGGCATCATGGTTATAAAAGATGTAAGGGCGCAAATGCAGCAGATTTTATGATGGGAGTATGCAATGTTAAAACCATGTACTTATCGTCCGAGGCTCTTGAGGTCCTTACTTTTTGCTGTAAAAAAGCAATACCAGTCTTCAACAACCTAATTCATTTAACAGTTGAGACTGACGAAAGAGTGGACTGGGAATCATTGCCGATTCTACTCAAGAATTGTCCAAATCTAGAAACCCTCATCTTCGAAGTACCATCGCATATCCTTTTCTTGCATGATCTGACACATTTCTTTTCTAACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

388

Amino Acids

44.01

Weight (kDa)

6.33

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 48 1.4e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 95 - 373 6.3e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 111 - 251 3.7e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AccI GTMKAC 1 cut(s) 202
AciI CCGC 2 cut(s) 407, 764
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 3 cut(s) 635, 746, 784
AfaI GTAC 5 cut(s) 153, 342, 383, 944, 1113
AfiI CCNNNNNNNGG 1 cut(s) 197
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 3 cut(s) 368, 803, 1006
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 8 cut(s) 101, 220, 231, 238, 508, 571, 601, 806
AluI AGCT 8 cut(s) 101, 220, 231, 238, 508, 571, 601, 806
Alw26I GTCTC 1 cut(s) 1025
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 814
ApeKI GCWGC 4 cut(s) 101, 220, 409, 902
ApoI RAATTY 3 cut(s) 635, 746, 784
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AspLEI GCGC 1 cut(s) 896
AspS9I GGNCC 3 cut(s) 355, 554, 967
AsuHPI GGTGA 3 cut(s) 466, 500, 554
AsuII TTCGAA 4 cut(s) 8, 29, 820, 1107
AsuNHI GCTAGC 1 cut(s) 806
AvaII GGWCC 3 cut(s) 355, 554, 967
BauI CACGAG 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 994
BbvI GCAGC 4 cut(s) 88, 207, 396, 914
BccI CCATC 5 cut(s) 10, 328, 664, 910, 1123
BciVI GTATCC 2 cut(s) 724, 783
BclI TGATCA 1 cut(s) 832
BcoDI GTCTC 1 cut(s) 1025
BfaI CTAG 4 cut(s) 215, 602, 807, 1091
BfrI CTTAAG 1 cut(s) 509
BfuI GTATCC 2 cut(s) 724, 783
BisI GCNGC 4 cut(s) 102, 221, 410, 903
BlsI GCNGC 4 cut(s) 103, 222, 411, 904
Bme18I GGWCC 3 cut(s) 355, 554, 967
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 355, 554, 967
BmrI ACTGGG 2 cut(s) 640, 1060
BmsI GCATC 1 cut(s) 877
BmtI GCTAGC 1 cut(s) 810
BmuI ACTGGG 2 cut(s) 640, 1060
BpiI GAAGAC 1 cut(s) 994
Bpu14I TTCGAA 4 cut(s) 8, 29, 820, 1107
BpuEI CTTGAG 4 cut(s) 614, 647, 983, 1058
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 358, 954
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 635, 998, 1055
Bse3DI GCAATG 3 cut(s) 384, 934, 1058
Bse8I GATNNNNATC 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 358, 954
BseGI GGATG 2 cut(s) 21, 656
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 3 cut(s) 384, 934, 1058
BseNI ACTGG 3 cut(s) 635, 998, 1055
BseRI GAGGAG 1 cut(s) 611
BseXI GCAGC 4 cut(s) 88, 207, 396, 914
BshFI GGCC 1 cut(s) 816
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 1025
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 1 cut(s) 816
Bsp119I TTCGAA 4 cut(s) 8, 29, 820, 1107
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 5 cut(s) 177, 316, 376, 832, 1138
BspACI CCGC 2 cut(s) 407, 764
BspANI GGCC 1 cut(s) 816
BspOI GCTAGC 1 cut(s) 810
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 4 cut(s) 8, 29, 820, 1107
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 3 cut(s) 384, 934, 1058
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 3 cut(s) 635, 998, 1055
BssECI CCNNGG 2 cut(s) 358, 954
BssMI GATC 5 cut(s) 177, 316, 376, 832, 1138
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 188, 359, 760, 1027
Bst6I CTCTTC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 509
BstAUI TGTACA 1 cut(s) 381
BstBI TTCGAA 4 cut(s) 8, 29, 820, 1107
BstC8I GCNNGC 1 cut(s) 808
BstDEI CTNAG 2 cut(s) 296, 1164
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 21, 656
BstHHI GCGC 1 cut(s) 896
BstKTI GATC 5 cut(s) 180, 319, 379, 835, 1141
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 5 cut(s) 177, 316, 376, 832, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 220, 587, 902
BstV1I GCAGC 4 cut(s) 88, 207, 396, 914
BstV2I GAAGAC 1 cut(s) 994
BstXI CCANNNNNNTGG 1 cut(s) 439
BsuI GTATCC 2 cut(s) 724, 783
BsuRI GGCC 1 cut(s) 816
BtgI CCRYGG 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 1101
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 21, 656
Cac8I GCNNGC 1 cut(s) 808
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 896
Cfr13I GGNCC 3 cut(s) 355, 554, 967
CseI GACGC 2 cut(s) 65, 854
Csp6I GTAC 5 cut(s) 152, 341, 382, 943, 1112
CviAII CATG 4 cut(s) 175, 872, 940, 1136
CviQI GTAC 5 cut(s) 152, 341, 382, 943, 1112
DdeI CTNAG 2 cut(s) 296, 1164
DpnI GATC 5 cut(s) 179, 318, 378, 834, 1140
DpnII GATC 5 cut(s) 177, 316, 376, 832, 1138
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 816
Eco47I GGWCC 3 cut(s) 355, 554, 967
EcoO109I RGGNCCY 1 cut(s) 967
FaeI CATG 4 cut(s) 178, 875, 943, 1139
FatI CATG 4 cut(s) 174, 871, 939, 1135
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 102, 221, 410, 903
FokI GGATG 2 cut(s) 28, 643
Fsp4HI GCNGC 4 cut(s) 102, 221, 410, 903
FspBI CTAG 4 cut(s) 215, 602, 807, 1091
GlaI GCGC 1 cut(s) 895
GluI GCNGC 4 cut(s) 102, 221, 410, 903
HaeIII GGCC 1 cut(s) 816
HgaI GACGC 2 cut(s) 65, 854
HhaI GCGC 1 cut(s) 896
Hin1II CATG 4 cut(s) 178, 875, 943, 1139
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HindIII AAGCTT 3 cut(s) 229, 236, 506
HinfI GANTC 5 cut(s) 20, 700, 791, 1055, 1066
HphI GGTGA 3 cut(s) 466, 500, 554
Hpy166II GTNNAC 3 cut(s) 203, 474, 1048
Hpy188I TCNGA 4 cut(s) 316, 394, 955, 1143
Hpy188III TCNNGA 7 cut(s) 161, 424, 459, 664, 962, 1075, 1091
Hpy8I GTNNAC 3 cut(s) 203, 474, 1048
HpyAV CCTTC 2 cut(s) 95, 827
HpyCH4III ACNGT 4 cut(s) 188, 359, 760, 1027
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 6 cut(s) 265, 303, 520, 902, 927, 1135
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 587, 902
HpyF3I CTNAG 2 cut(s) 296, 1164
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 4 cut(s) 178, 875, 943, 1139
HspAI GCGC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 5 cut(s) 177, 316, 376, 832, 1138
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 280, 598
Lsp1109I GCAGC 4 cut(s) 88, 207, 396, 914
LweI GCATC 1 cut(s) 877
MaeI CTAG 4 cut(s) 215, 602, 807, 1091
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 68, 584
MalI GATC 5 cut(s) 179, 318, 378, 834, 1140
MboI GATC 5 cut(s) 177, 316, 376, 832, 1138
MboII GAAGA 5 cut(s) 53, 380, 491, 994, 1096
MfeI CAATTG 1 cut(s) 675
MluCI AATT 7 cut(s) 306, 635, 675, 746, 784, 1014, 1078
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 126, 423, 541, 567, 589, 671, 949, 958, 1109
MseI TTAA 6 cut(s) 234, 281, 510, 612, 933, 1022
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 409
MspCI CTTAAG 1 cut(s) 509
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 220, 587, 902
NdeII GATC 5 cut(s) 177, 316, 376, 832, 1138
NheI GCTAGC 1 cut(s) 806
NlaIII CATG 4 cut(s) 178, 875, 943, 1139
NmuCI GTSAC 2 cut(s) 68, 584
NspV TTCGAA 4 cut(s) 8, 29, 820, 1107
PceI AGGCCT 1 cut(s) 816
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 4 cut(s) 700, 791, 1055, 1066
PkrI GCNGC 4 cut(s) 103, 222, 411, 904
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 967
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 967
PspPI GGNCC 3 cut(s) 355, 554, 967
PspPPI RGGWCCY 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 5 cut(s) 153, 342, 383, 944, 1113
RsaNI GTAC 5 cut(s) 152, 341, 382, 943, 1112
RseI CAYNNNNRTG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 6 cut(s) 234, 281, 510, 612, 933, 1022
SatI GCNGC 4 cut(s) 102, 221, 410, 903
Sau3AI GATC 5 cut(s) 177, 316, 376, 832, 1138
Sau96I GGNCC 3 cut(s) 355, 554, 967
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 877
SfuI TTCGAA 4 cut(s) 8, 29, 820, 1107
SinI GGWCC 3 cut(s) 355, 554, 967
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 5 cut(s) 509, 593, 662, 962, 1073
SmoI CTYRAG 5 cut(s) 509, 593, 662, 962, 1073
Sse9I AATT 7 cut(s) 306, 635, 675, 746, 784, 1014, 1078
SseBI AGGCCT 1 cut(s) 816
SsiI CCGC 2 cut(s) 407, 764
SspMI CTAG 4 cut(s) 215, 602, 807, 1091
StuI AGGCCT 1 cut(s) 816
TaaI ACNGT 4 cut(s) 188, 359, 760, 1027
TaiI ACGT 1 cut(s) 75
TaqI TCGA 5 cut(s) 8, 29, 107, 820, 1107
TasI AATT 7 cut(s) 306, 635, 675, 746, 784, 1014, 1078
TatI WGTACW 2 cut(s) 381, 942
TfiI GAWTC 4 cut(s) 700, 791, 1055, 1066
Tru1I TTAA 6 cut(s) 234, 281, 510, 612, 933, 1022
Tru9I TTAA 6 cut(s) 234, 281, 510, 612, 933, 1022
TseFI GTSAC 2 cut(s) 68, 584
TseI GCWGC 4 cut(s) 101, 220, 409, 902
Tsp45I GTSAC 2 cut(s) 68, 584
TspDTI ATGAA 1 cut(s) 1007
TspGWI ACGGA 1 cut(s) 267
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 3 cut(s) 355, 554, 967
XapI RAATTY 3 cut(s) 635, 746, 784
XbaI TCTAGA 1 cut(s) 1090
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 4 cut(s) 215, 602, 807, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.