AT5G35926

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000813
Physical Location & Seq
Forward (+)
14062676 .. 14066323
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35926.1

Sequence Viewer

Length: 1218 bp
ATGGATCTAACGGATCCAGATCCAGATAGGTGGTTTACGGATCCAGCAGATCCGGATAGCTGTTTCACGGATCATGCGCATCAGCCGCTTGCTTTAGATCTATACATTCCTTCGTCTCGTGATTGTTGTGAAAACTCGAGTTTTAATCCTCTCCCTTCTAAGATCTTTGAGAGCAAGGCATTGGTTTGGCTCAAGATACAGTTTCAAGATGGTGTCAGCATTGATGTGAAACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCACCTTGATTATTTCAAGATAGAACCGAGTAAGTTTAACAAGCTTCTTTCTGGCTGCCATGCGCTTGAAGAGTTAGTGCTGATCAATTTGATGTGGGCTGATTCCTCGGGATATAAAGTTTGCCCTGTCACAGTGTCTATCCCAACCCTCAAGAGACTAAAGTTTTGTCGTTCTGAAGATTTCTATGAGGGTAAATTTCATGAGTATGAAGACTATGATGAGGAGAACATTAAAAAGGGAGTGTCATTGTCGTTTGATAATCCGAATTTGGTGTACCTTGAATATTCTGATGTTATTGTGGACAAGTATAAACAAGTGAGATTTGACTCGCTTGTAGAAGCTAATCTAGGACTTCGAAAGAATCAGGCTGAACCAGACAAGATTAATGTAACAAAGCTTCTCATGGGACTACACAATGTTAAGATCCTCTACTTGTCTAATGACATTCTTGAGGTACTTGCTTGCTGCCGAGAAAGAATACCGGTATTCGACAATCTACTCGAGTTAACTATTAAGACTACACCATATGTAGGATGGAAATCATTGCAACCTCTACTCAAGAGTTATCCAAGTCTAGAAACATTGGTCTTCGAAGGATTGCATCACAAGTATACAAAGAAATGTGGGGACAAGGACGGATGTTTGTGCAAATATGAGAATGATTTGGGGGCAAAGAAGAAGAATGTTCGTACTTGCTTAACATCAAGTCCTGTGAAAGTTCTAAAGATATTGAAGTTTGGTGAAACTTTTGAGGATGAGGATGAGGATGGTCTTGATGTTGATCATGATGACTATGATGATGAAGATGATGTGTCTTGTGATGAAGATGTGATGAAAGTATTCAAGAAACTGCAGAAGCTTCCTCGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAAAATCAAAGAACCTTAGCTTGTCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

405

Amino Acids

46.24

Weight (kDa)

5.37

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 49 - 146 3.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 78
AccI GTMKAC 1 cut(s) 875
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 1 cut(s) 86
AclWI GGATC 9 cut(s) 8, 12, 14, 21, 35, 44, 48, 78, 682
AcsI RAATTY 2 cut(s) 458, 529
AcuI CTGAAG 2 cut(s) 459, 1122
AfaI GTAC 4 cut(s) 539, 720, 955, 1207
AfiI CCNNNNNNNGG 1 cut(s) 794
AflII CTTAAG 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 745
AgsI TTSAA 6 cut(s) 206, 280, 332, 545, 997, 1108
AluBI AGCT 8 cut(s) 60, 253, 307, 605, 661, 1123, 1136, 1179
AluI AGCT 8 cut(s) 60, 253, 307, 605, 661, 1123, 1136, 1179
Alw26I GTCTC 2 cut(s) 120, 412
AlwI GGATC 9 cut(s) 8, 12, 14, 21, 35, 44, 48, 78, 682
Ama87I CYCGRG 4 cut(s) 136, 370, 764, 1128
Aor13HI TCCGGA 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 318, 729
ApoI RAATTY 2 cut(s) 458, 529
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
AseI ATTAAT 1 cut(s) 648
AsiGI ACCGGT 1 cut(s) 745
Asp700I GAANNNNTTC 1 cut(s) 1103
AspLEI GCGC 2 cut(s) 79, 328
AspS9I GGNCC 1 cut(s) 1153
AsuHPI GGTGA 1 cut(s) 1016
AsuII TTCGAA 2 cut(s) 619, 855
AvaI CYCGRG 4 cut(s) 136, 370, 764, 1128
AvaII GGWCC 1 cut(s) 1153
BamHI GGATCC 2 cut(s) 13, 40
BarI GAAGNNNNNNTAC 2 cut(s) 645, 677
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 480, 844
BbvI GCAGC 2 cut(s) 305, 716
BccI CCATC 3 cut(s) 203, 792, 1025
BclI TGATCA 2 cut(s) 345, 1045
BcoDI GTCTC 2 cut(s) 120, 412
BfaI CTAG 2 cut(s) 611, 839
BfmI CTRYAG 1 cut(s) 1115
BfrI CTTAAG 1 cut(s) 254
BglII AGATCT 2 cut(s) 97, 162
BisI GCNGC 3 cut(s) 86, 319, 730
BlsI GCNGC 3 cut(s) 87, 320, 731
Bme18I GGWCC 1 cut(s) 1153
BmeT110I CYCGRG 4 cut(s) 136, 370, 764, 1128
BmgT120I GGNCC 1 cut(s) 1153
BmiI GGNNCC 2 cut(s) 15, 42
BmsI GCATC 2 cut(s) 88, 874
BpiI GAAGAC 2 cut(s) 480, 844
Bpu10I CCTNAGC 1 cut(s) 1175
Bpu14I TTCGAA 2 cut(s) 619, 855
BpuEI CTTGAG 4 cut(s) 176, 398, 734, 806
BsaBI GATNNNNATC 3 cut(s) 18, 802, 1044
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 2 cut(s) 52, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 794
Bse118I RCCGGY 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 806
Bse8I GATNNNNATC 3 cut(s) 18, 802, 1044
BseAI TCCGGA 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 5 cut(s) 803, 908, 1024, 1030, 1036
BseJI GATNNNNATC 3 cut(s) 18, 802, 1044
BseLI CCNNNNNNNGG 1 cut(s) 794
BseMI GCAATG 1 cut(s) 806
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 305, 716
BshTI ACCGGT 1 cut(s) 745
BsiHKCI CYCGRG 4 cut(s) 136, 370, 764, 1128
BsiSI CCGG 2 cut(s) 53, 746
BslFI GGGAC 2 cut(s) 684, 905
BslI CCNNNNNNNGG 1 cut(s) 794
BsmAI GTCTC 2 cut(s) 120, 412
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 684, 905
BsoBI CYCGRG 4 cut(s) 136, 370, 764, 1128
Bsp119I TTCGAA 2 cut(s) 619, 855
Bsp13I TCCGGA 1 cut(s) 52
BspACI CCGC 1 cut(s) 86
BspEI TCCGGA 1 cut(s) 52
BspHI TCATGA 2 cut(s) 463, 1048
BspLI GGNNCC 2 cut(s) 15, 42
BspMAI CTGCAG 1 cut(s) 1119
BspPI GGATC 9 cut(s) 8, 12, 14, 21, 35, 44, 48, 78, 682
BspT104I TTCGAA 2 cut(s) 619, 855
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 806
BsrFI RCCGGY 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 1 cut(s) 369
BssNAI GTATAC 1 cut(s) 876
BssSI CACGAG 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 201, 397
Bst6I CTCTTC 3 cut(s) 249, 327, 1215
BstAFI CTTAAG 1 cut(s) 254
BstBI TTCGAA 2 cut(s) 619, 855
BstC8I GCNNGC 2 cut(s) 90, 727
BstDEI CTNAG 2 cut(s) 159, 1175
BstF5I GGATG 5 cut(s) 803, 908, 1024, 1030, 1036
BstHHI GCGC 2 cut(s) 79, 328
BstMAI GTCTC 2 cut(s) 120, 412
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 1115
BstV1I GCAGC 2 cut(s) 305, 716
BstV2I GAAGAC 2 cut(s) 480, 844
BstX2I RGATCY 8 cut(s) 4, 13, 19, 40, 49, 97, 162, 687
BstXI CCANNNNNNTGG 1 cut(s) 30
BstYI RGATCY 8 cut(s) 4, 13, 19, 40, 49, 97, 162, 687
BstZ17I GTATAC 1 cut(s) 876
BtsCI GGATG 5 cut(s) 803, 908, 1024, 1030, 1036
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 90, 727
CciI TCATGA 2 cut(s) 463, 1048
CfoI GCGC 2 cut(s) 79, 328
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 1153
Csp6I GTAC 4 cut(s) 538, 719, 954, 1206
CspAI ACCGGT 1 cut(s) 745
CviAII CATG 5 cut(s) 74, 323, 464, 667, 1049
CviQI GTAC 4 cut(s) 538, 719, 954, 1206
DdeI CTNAG 2 cut(s) 159, 1175
Eam1104I CTCTTC 3 cut(s) 249, 327, 1215
EarI CTCTTC 3 cut(s) 249, 327, 1215
Eco47I GGWCC 1 cut(s) 1153
Eco57I CTGAAG 2 cut(s) 459, 1122
Eco88I CYCGRG 4 cut(s) 136, 370, 764, 1128
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 5 cut(s) 77, 326, 467, 670, 1052
FaqI GGGAC 2 cut(s) 684, 905
FatI CATG 5 cut(s) 73, 322, 463, 666, 1048
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 2 cut(s) 345, 1045
FblI GTMKAC 1 cut(s) 875
Fnu4HI GCNGC 3 cut(s) 86, 319, 730
FokI GGATG 5 cut(s) 810, 915, 1031, 1037, 1043
Fsp4HI GCNGC 3 cut(s) 86, 319, 730
FspAI RTGCGCAY 1 cut(s) 78
FspBI CTAG 2 cut(s) 611, 839
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 2 cut(s) 78, 327
GluI GCNGC 3 cut(s) 86, 319, 730
HapII CCGG 2 cut(s) 53, 746
HhaI GCGC 2 cut(s) 79, 328
Hin1II CATG 5 cut(s) 77, 326, 467, 670, 1052
Hin6I GCGC 2 cut(s) 77, 326
HinP1I GCGC 2 cut(s) 77, 326
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HindIII AAGCTT 4 cut(s) 251, 305, 659, 1121
HinfI GANTC 3 cut(s) 365, 590, 625
HpaI GTTAAC 1 cut(s) 771
HpaII CCGG 2 cut(s) 53, 746
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 5 cut(s) 36, 538, 565, 771, 876
Hpy188I TCNGA 3 cut(s) 439, 528, 553
Hpy8I GTNNAC 5 cut(s) 36, 538, 565, 771, 876
HpyAV CCTTC 3 cut(s) 120, 165, 851
HpyCH4III ACNGT 2 cut(s) 201, 397
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 811, 865, 912, 1117
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 159, 1175
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 5 cut(s) 77, 326, 467, 670, 1052
HspAI GCGC 2 cut(s) 77, 326
Kpn2I TCCGGA 1 cut(s) 52
Ksp22I TGATCA 2 cut(s) 345, 1045
KspAI GTTAAC 1 cut(s) 771
Lsp1109I GCAGC 2 cut(s) 305, 716
LweI GCATC 2 cut(s) 88, 874
MaeI CTAG 2 cut(s) 611, 839
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 391, 652
MflI RGATCY 8 cut(s) 4, 13, 19, 40, 49, 97, 162, 687
MluCI AATT 3 cut(s) 349, 458, 529
MlyI GAGTC 1 cut(s) 584
MroI TCCGGA 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 1103
MseI TTAA 9 cut(s) 144, 255, 300, 495, 648, 684, 770, 777, 962
MslI CAYNNNNRTG 2 cut(s) 224, 468
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 2 cut(s) 53, 746
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeI CATATG 1 cut(s) 790
NlaIII CATG 5 cut(s) 77, 326, 467, 670, 1052
NlaIV GGNNCC 2 cut(s) 15, 42
NmeAIII GCCGAG 1 cut(s) 758
NmuCI GTSAC 1 cut(s) 391
NsbI TGCGCA 1 cut(s) 78
NspV TTCGAA 2 cut(s) 619, 855
PaeR7I CTCGAG 3 cut(s) 136, 764, 1128
PagI TCATGA 2 cut(s) 463, 1048
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 2 cut(s) 365, 625
PinAI ACCGGT 1 cut(s) 745
PkrI GCNGC 3 cut(s) 87, 320, 731
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 648
PspN4I GGNNCC 2 cut(s) 15, 42
PspPI GGNCC 1 cut(s) 1153
PspXI VCTCGAGB 3 cut(s) 136, 764, 1128
PstI CTGCAG 1 cut(s) 1119
PsuI RGATCY 8 cut(s) 4, 13, 19, 40, 49, 97, 162, 687
RsaI GTAC 4 cut(s) 539, 720, 955, 1207
RsaNI GTAC 4 cut(s) 538, 719, 954, 1206
RseI CAYNNNNRTG 2 cut(s) 224, 468
SaqAI TTAA 9 cut(s) 144, 255, 300, 495, 648, 684, 770, 777, 962
SatI GCNGC 3 cut(s) 86, 319, 730
Sau96I GGNCC 1 cut(s) 1153
SchI GAGTC 1 cut(s) 584
SfaNI GCATC 2 cut(s) 88, 874
SfcI CTRYAG 1 cut(s) 1115
Sfr274I CTCGAG 3 cut(s) 136, 764, 1128
SfuI TTCGAA 2 cut(s) 619, 855
SinI GGWCC 1 cut(s) 1153
SlaI CTCGAG 3 cut(s) 136, 764, 1128
SmiMI CAYNNNNRTG 2 cut(s) 224, 468
SmlI CTYRAG 8 cut(s) 136, 191, 254, 413, 713, 764, 821, 1128
SmoI CTYRAG 8 cut(s) 136, 191, 254, 413, 713, 764, 821, 1128
Sse9I AATT 3 cut(s) 349, 458, 529
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 611, 839
TaaI ACNGT 2 cut(s) 201, 397
TaiI ACGT 1 cut(s) 235
TaqI TCGA 7 cut(s) 137, 619, 753, 765, 855, 1129, 1193
TasI AATT 3 cut(s) 349, 458, 529
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 2 cut(s) 365, 625
Tru1I TTAA 9 cut(s) 144, 255, 300, 495, 648, 684, 770, 777, 962
Tru9I TTAA 9 cut(s) 144, 255, 300, 495, 648, 684, 770, 777, 962
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 318, 729
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 5 cut(s) 452, 486, 1080, 1101, 1112
TspGWI ACGGA 4 cut(s) 26, 53, 83, 915
TspRI CASTG 1 cut(s) 402
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 1153
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 2 cut(s) 458, 529
XbaI TCTAGA 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 795
XhoI CTCGAG 3 cut(s) 136, 764, 1128
XmiI GTMKAC 1 cut(s) 875
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 2 cut(s) 611, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.