AT3G62430

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
23093451 .. 23095657
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62430.1

Sequence Viewer

Length: 1314 bp
ATGGATAGAATCAGTAATTTACCAGATGGTGTTATCTATCGCGTGATCTCCTTACTTTCGACAAAAGAAGCTACTTGCTTGAAGTATACCTCCAAGAACTGGCTGAATCTGGTTACCATCATACCGATTGCTGTTTTCGTTGATTCCTCGGCGTCTGCCATTAGTGCAAGTTTCAAAGATTTCGCTGATCGAATAATGTTAGCTCGACTTGCCAGTCACCGTATTAGGAGATTCTCTCTAAAGTTGCAGTCTTTGAATTTTGCTCAGTATAAAACTGTCAATGATTGTTTACGCAATGTGTTGGAGTGTGGAGTCTTGGATCTTGAACTGGACATCAATGTCAGAGGAGATTACTCACTGCCTTCTGAGATCTTCACTTGCAAGAGCGTTGTGAAAATGAAACTAGGGTCTGGTTTTGTTATTGACATTCTCCCTAAGAATGCTTGGCTTCCTGCTCTTAAGACTCTCCTTCTTGATACAGTTCGGTTCGAATTCGATAACACTGCTGGTTGTTCGTTTACAAAGCTTATTTCTGCTTGCCCTGTGCTCGAGGAGTTAGTCATAGATGGCCACAACTGTGAAGATTGGAAATGGTCTCGCAGAGTATCTAGTCAGATCCTTAAGCGACTTACTATTCGGCGTAAAGAATGGGTTCATGATGGCTCTAGTTTTGAGCCTATCAGTTTGGATATTCCTAGTCTTGAATACTTTAAATACTTTGATACTCTCCGAGATAGCTATCCAGTTGTTAAGCTCAACTCCCTTGTGGAAGCTAAGCTAGAACTTCCTTCTCTTTATATTGGGGATACCTACAATGTTAGGAATCTGATCAAGGGGTTGAAAAATGTTCAGATTCTGCGCTTAGGAGCTGTTGACACGATGCACCTGTTTTGGGTCTTCAGGGAAGCAGTCCCAGTGTTTGAGAACCTGTTTCATTTATCAGTTAGTACTCATGACGCTATCTGTTGGGATGATCTGCGTATTCTTCTTGAAAAATCTCCAAATCTAAAGACTCTCACCATTGAGGCTTTGCATTATCATGGCTATGGGGATGAAAACTCTGTTTGCGAATGCTTGGATGGGTATTCTTTCCTTTTGTCCTGCCCTATTGAGATCCTAAAGATAACTGAGTTCGGTGGAGAGATTGAAGAAATGGAGCAAGTAGAGTATGTCTTGGAGAATTTGCTGTGTCTGGTGCTGTTGGAAATTCATGTTAAGACAAAGAAGATTGACAGAAAGCTGCAGATCTTGGCGGATCTCCTAATGCTTCCGAGAGCTTCATCCAAATGCAAAGTCCAGGTCAAGTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

437

Amino Acids

49.9

Weight (kDa)

6.34

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 96 - 242 1e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 213, 338
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 42
AciI CCGC 1 cut(s) 1253
AclWI GGATC 4 cut(s) 327, 610, 1108, 1263
AcoI YGGCCR 1 cut(s) 568
AcsI RAATTY 4 cut(s) 256, 491, 1180, 1206
AcuI CTGAAG 1 cut(s) 883
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 1 cut(s) 949
AfiI CCNNNNNNNGG 2 cut(s) 99, 892
AflII CTTAAG 2 cut(s) 458, 620
AgsI TTSAA 8 cut(s) 82, 175, 256, 326, 704, 841, 992, 1148
AjnI CCWGG 1 cut(s) 1296
AleI CACNNNNGTG 1 cut(s) 576
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 4 cut(s) 327, 610, 1108, 1263
AlwNI CAGNNNCTG 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 1 cut(s) 568
ApeKI GCWGC 1 cut(s) 1240
ApoI RAATTY 4 cut(s) 256, 491, 1180, 1206
ArsI GACNNNNNNTTYG 5 cut(s) 618, 650, 1278, 1284, 1310
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 861
AsuHPI GGTGA 2 cut(s) 209, 1009
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 548
BalI TGGCCA 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 889
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 1227
BccI CCATC 5 cut(s) 20, 125, 560, 653, 1073
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 1298
BciVI GTATCC 1 cut(s) 799
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 5 cut(s) 404, 609, 666, 696, 779
BfmI CTRYAG 1 cut(s) 1241
BfrI CTTAAG 2 cut(s) 458, 620
BfuI GTATCC 1 cut(s) 799
BglII AGATCT 2 cut(s) 369, 1245
BisI GCNGC 1 cut(s) 1241
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 1 cut(s) 1242
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 1 cut(s) 1298
BmeT110I CYCGRG 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 1298
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 1 cut(s) 870
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 889
BplI GAGNNNNNCTC 2 cut(s) 220, 252
Bpu10I CCTNAGC 1 cut(s) 862
Bpu1102I GCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 489
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 892
Bse1I ACTGG 5 cut(s) 104, 213, 333, 743, 914
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 1 cut(s) 1298
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 4 cut(s) 976, 1057, 1084, 1280
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 2 cut(s) 99, 892
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 3 cut(s) 278, 357, 1119
BseNI ACTGG 5 cut(s) 104, 213, 333, 743, 914
BseRI GAGGAG 2 cut(s) 360, 566
BseXI GCAGC 1 cut(s) 1227
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 99, 892
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 2 cut(s) 445, 1076
BsnI GGCC 1 cut(s) 570
Bso31I GGTCTC 1 cut(s) 600
BsoBI CYCGRG 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 549
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 1 cut(s) 1253
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 3 cut(s) 277, 358, 1120
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 2 cut(s) 655, 952
BspMAI CTGCAG 1 cut(s) 1245
BspPI GGATC 4 cut(s) 327, 610, 1108, 1263
BspT104I TTCGAA 1 cut(s) 489
BspTI CTTAAG 2 cut(s) 458, 620
BspTNI GGTCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 5 cut(s) 104, 213, 333, 743, 914
BssECI CCNNGG 1 cut(s) 147
BssNAI GTATAC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 152
Bst1107I GTATAC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 1298
Bst4CI ACNGT 4 cut(s) 221, 277, 481, 578
BstACI GRCGYC 1 cut(s) 152
BstAFI CTTAAG 2 cut(s) 458, 620
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 6 cut(s) 264, 366, 435, 774, 862, 1128
BstEII GGTNACC 1 cut(s) 112
BstF5I GGATG 4 cut(s) 976, 1057, 1084, 1280
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 861
BstMAI GTCTC 1 cut(s) 600
BstMWI GCNNNNNNNGC 2 cut(s) 164, 209
BstNI CCWGG 1 cut(s) 1298
BstPI GGTNACC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 1296
BstSFI CTRYAG 1 cut(s) 1241
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 1227
BstV2I GAAGAC 1 cut(s) 889
BstX2I RGATCY 6 cut(s) 319, 369, 615, 1113, 1245, 1255
BstYI RGATCY 6 cut(s) 319, 369, 615, 1113, 1245, 1255
BstZ17I GTATAC 1 cut(s) 87
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 1 cut(s) 570
BtsCI GGATG 4 cut(s) 976, 1057, 1084, 1280
BtsI GCAGTG 2 cut(s) 356, 501
BtsIMutI CAGTG 3 cut(s) 356, 501, 921
Cac8I GCNNGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 856
CciI TCATGA 2 cut(s) 655, 952
CfoI GCGC 1 cut(s) 861
CseI GACGC 2 cut(s) 141, 965
Csp6I GTAC 1 cut(s) 948
CviAII CATG 4 cut(s) 656, 953, 1040, 1211
CviQI GTAC 1 cut(s) 948
DdeI CTNAG 6 cut(s) 264, 366, 435, 774, 862, 1128
DraI TTTAAA 1 cut(s) 712
DrdI GACNNNNNNGTC 2 cut(s) 213, 338
DseDI GACNNNNNNGTC 2 cut(s) 213, 338
EaeI YGGCCR 1 cut(s) 568
EciI GGCGGA 1 cut(s) 1268
Eco31I GGTCTC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 883
Eco88I CYCGRG 1 cut(s) 548
Eco91I GGTNACC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 1296
FaeI CATG 4 cut(s) 659, 956, 1043, 1214
FaqI GGGAC 1 cut(s) 896
FatI CATG 4 cut(s) 655, 952, 1039, 1210
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 1241
FokI GGATG 4 cut(s) 983, 1064, 1091, 1267
Fsp4HI GCNGC 1 cut(s) 1241
FspBI CTAG 5 cut(s) 404, 609, 666, 696, 779
GlaI GCGC 1 cut(s) 860
GluI GCNGC 1 cut(s) 1241
HaeIII GGCC 1 cut(s) 570
HgaI GACGC 2 cut(s) 141, 965
HhaI GCGC 1 cut(s) 861
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 4 cut(s) 659, 956, 1043, 1214
Hin6I GCGC 1 cut(s) 859
HinP1I GCGC 1 cut(s) 859
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 9 cut(s) 9, 106, 143, 231, 312, 463, 823, 853, 1012
HphI GGTGA 2 cut(s) 209, 1009
Hpy166II GTNNAC 4 cut(s) 87, 290, 519, 874
Hpy188I TCNGA 7 cut(s) 344, 367, 615, 731, 828, 852, 1272
Hpy188III TCNNGA 6 cut(s) 323, 473, 656, 701, 953, 989
Hpy8I GTNNAC 4 cut(s) 87, 290, 519, 874
HpyAV CCTTC 3 cut(s) 372, 479, 798
HpyCH4III ACNGT 4 cut(s) 221, 277, 481, 578
HpyCH4V TGCA 7 cut(s) 167, 247, 381, 883, 1033, 1243, 1290
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 209
HpyF3I CTNAG 6 cut(s) 264, 366, 435, 774, 862, 1128
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 4 cut(s) 659, 956, 1043, 1214
HspAI GCGC 1 cut(s) 859
Ksp22I TGATCA 1 cut(s) 828
LmnI GCTCC 2 cut(s) 866, 1156
Lsp1109I GCAGC 1 cut(s) 1227
LweI GCATC 1 cut(s) 870
MaeI CTAG 5 cut(s) 404, 609, 666, 696, 779
MaeIII GTNAC 2 cut(s) 112, 215
MboII GAAGA 6 cut(s) 364, 593, 889, 977, 1160, 1237
MflI RGATCY 6 cut(s) 319, 369, 615, 1113, 1245, 1255
MhlI GDGCHC 1 cut(s) 549
MlsI TGGCCA 1 cut(s) 570
MluCI AATT 5 cut(s) 16, 256, 491, 1180, 1206
MluNI TGGCCA 1 cut(s) 570
MlyI GAGTC 3 cut(s) 321, 457, 1006
MmeI TCCRAC 2 cut(s) 282, 1182
MnlI CCTC 5 cut(s) 100, 157, 338, 544, 1018
Mox20I TGGCCA 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 570
MseI TTAA 5 cut(s) 459, 621, 711, 750, 1215
MslI CAYNNNNRTG 4 cut(s) 576, 1038, 1044, 1285
Msp20I TGGCCA 1 cut(s) 570
MspCI CTTAAG 2 cut(s) 458, 620
MspR9I CCNGG 1 cut(s) 1298
Mva1269I GAATGC 2 cut(s) 445, 1076
MvaI CCWGG 1 cut(s) 1298
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 164, 209
NlaIII CATG 4 cut(s) 659, 956, 1043, 1214
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 215
NspV TTCGAA 1 cut(s) 489
OliI CACNNNNGTG 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 548
PagI TCATGA 2 cut(s) 655, 952
PctI GAATGC 2 cut(s) 445, 1076
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 6 cut(s) 9, 106, 143, 231, 823, 853
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 1 cut(s) 1242
PleI GAGTC 3 cut(s) 320, 457, 1006
PpsI GAGTC 3 cut(s) 320, 457, 1006
Psp6I CCWGG 1 cut(s) 1296
PspEI GGTNACC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 1296
PspXI VCTCGAGB 1 cut(s) 548
PstI CTGCAG 1 cut(s) 1245
PstNI CAGNNNCTG 1 cut(s) 856
PsuI RGATCY 6 cut(s) 319, 369, 615, 1113, 1245, 1255
RsaI GTAC 1 cut(s) 949
RsaNI GTAC 1 cut(s) 948
RseI CAYNNNNRTG 4 cut(s) 576, 1038, 1044, 1285
SaqAI TTAA 5 cut(s) 459, 621, 711, 750, 1215
SatI GCNGC 1 cut(s) 1241
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 3 cut(s) 321, 457, 1006
ScrFI CCNGG 1 cut(s) 1298
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 1 cut(s) 1241
Sfr274I CTCGAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 4 cut(s) 576, 1038, 1044, 1285
SmlI CTYRAG 3 cut(s) 458, 548, 620
SmoI CTYRAG 3 cut(s) 458, 548, 620
Sse9I AATT 5 cut(s) 16, 256, 491, 1180, 1206
SsiI CCGC 1 cut(s) 1253
SspMI CTAG 5 cut(s) 404, 609, 666, 696, 779
StyD4I CCNGG 1 cut(s) 1296
TaaI ACNGT 4 cut(s) 221, 277, 481, 578
TaqI TCGA 6 cut(s) 59, 190, 205, 489, 495, 549
TasI AATT 5 cut(s) 16, 256, 491, 1180, 1206
TatI WGTACW 1 cut(s) 947
TfiI GAWTC 6 cut(s) 9, 106, 143, 231, 823, 853
Tru1I TTAA 5 cut(s) 459, 621, 711, 750, 1215
Tru9I TTAA 5 cut(s) 459, 621, 711, 750, 1215
TscAI CASTG 3 cut(s) 363, 508, 921
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 1240
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 6 cut(s) 413, 644, 923, 1068, 1199, 1269
TspRI CASTG 3 cut(s) 363, 508, 921
Van91I CCANNNNNTGG 1 cut(s) 99
Vha464I CTTAAG 2 cut(s) 458, 620
XapI RAATTY 4 cut(s) 256, 491, 1180, 1206
XhoI CTCGAG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 5 cut(s) 404, 609, 666, 696, 779
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.