Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000813

Physical Location & Seq

Genomic Coordinates Reverse (-)

17789404 .. 17791582

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGAATGCTAAAGATGTAATCAGCCGTCTACCAGATGAGGTTCTTGGGCGTATTCTGTCTCTTATCTCCACAAAAGAAGCTGTTTCAACCTCAGTACTCTCTAAGAGGTGGAAGAACATGTTTGTTTTGGTTTCCAATCTTGATATTGATGATCGTCAATCTGTGCCTAAGACTAAGCAAAACCGGATTGAGATTCACAGAAATTACATGGCTTTCGTTGACAAATTGCTAGATACGCAACGTGGTTCTTCTATAAAGAAGCTCACTCTAAAGAGTCATGTTGGTGTTCGAGGTGGCACTGATTCATCTCGCATTCAAAGTTGGATTTGCAACGTTCTTGACCATGGTGTTATGGATCTTGATGTGTTCATTACTTTAAAAGGAAAATCTCCACCAGTGCCTGCAATGATCTTTAAGAGCAAGACATTGGTTAAGCTGAGAGTAGGACGTGGTTTTACAATCAAGCTTTCTCAAGATGTTTCTCTTCCTTTGCTTAGGACATTATGTCTTGACTCAGTTAATTTTGTTGGAGGTCATAATGTTGTTGGAACTCTTATATCTCGCTGTCCTGTTCTCGAAGAACTGGTTGTTGAGGAGCGGCGATGTGTAGATTGGACTTGTTCCGTGTCTTCTCCATCTCTAAAGAGACTACACATCCGATTTGATCGCAAGTTTACTAGTATTTCATTAGATGCTCCTAATCTTATCTACTACAAACACTCTGGTTATGTTTTGGGTAAGTATCCTAATGTTAAGTTGGATTCCCTCATCGAAGCTAGACTCAATCTTCGGATGGATGAAACAAGAATGGTGGGAGTAAGAAATGGATCTCTCGGTTCCATTCCCGCTGATATGAGAAATCTCATCAATGGAATCAGAAATGTTAGAATCCTTCACTTATCTAGCCACACTCTAGAGCTGCTTTATTTCTCATGTAAAGAAATGCCATTGTTCGACAGCCTTGTTAGTCTATCTATTGGGAATGACAAGGCAAGAGGATGGCAAATGCTGCCACTTCTGATCAAGAACTCTCCAAACCTAGAAACCCTCATCTTCATGGGTCTCGATCACTACATAACAAACAGATGTGGGGATGTATGTGTTTGCTATGATACCGACGAGAGCATAACCTCTTGCCTATCATCATCTCAAGTGAAGGTGCTGGAGATATTGAGCTATCAAGGAACGACAAGAGAGCTGAATCAAATGAAGCATTTCTTGGAGAAGTTACCGTGTCTTGAGCTAGTGAAAATTTGCGTGGTAAACAACAGTAATAACTTGCAAACCACCATGGAAATGAGGAATCTTATGATGCTTCCAAGAGCGTCATCAAAGTGTAAGATCCAAGTCAAGGTTTTAACAAAAAATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0033993 GO:0034243 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090351 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05016 map05016

Pfam Domains

Protein Families

Med26 TFIIS_C TFIIS_M

Protein Analysis

457

Amino Acids

51.59

Weight (kDa)

9.42

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	7 - 41	1.2e-07	F-box domain
LRR_At5g56370	PF24758	106 - 235	7.6e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G56610 AT1G56610 AT1G56610 AT1G58310 AT2G42720 AT2G42730 AT3G42770 AT3G44060 AT3G44080 AT3G44090 AT3G44180 AT3G44810 AT3G49150 AT3G54160 AT3G58920 AT3G58960 AT3G58980 AT3G59150 AT3G59160 AT3G59170 AT3G59180 AT3G59190 AT3G59190 AT3G59200 AT3G59200 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59230 AT3G59240 AT3G59250 AT3G59270 AT3G59460 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G62430 AT3G62440 AT4G00320 AT4G14096 AT4G14096 AT4G14103 AT4G14103 AT4G14103 AT4G22280 AT4G22280 AT5G15620 AT5G25860 AT5G35926 AT5G35926 AT5G40050 AT5G41630 AT5G41830 AT5G41830 AT5G41840

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G56610 AT1G56610 AT1G56610 AT1G58310 AT2G42720 AT2G42730 AT3G42770 AT3G44060 AT3G44080 AT3G44090 AT3G44180 AT3G44810 AT3G49150 AT3G54160 AT3G58920 AT3G58960 AT3G58980 AT3G59150 AT3G59160 AT3G59170 AT3G59180 AT3G59190 AT3G59190 AT3G59200 AT3G59200 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59230 AT3G59240 AT3G59250 AT3G59270 AT3G59460 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G62430 AT3G62440 AT4G00320 AT4G14096 AT4G14096 AT4G14103 AT4G14103 AT4G14103 AT4G22280 AT4G22280 AT5G15620 AT5G25860 AT5G35926 AT5G35926 AT5G40050 AT5G41630 AT5G41830 AT5G41830 AT5G41840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	2 cut(s)	598, 846
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	3 cut(s)	363, 835, 1336
AcsI	RAATTY	1 cut(s)	1251
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	1351
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	87, 317
AhdI	GACNNNNNGTC	1 cut(s)	504
AhlI	ACTAGT	1 cut(s)	677
AjiI	CACGTC	1 cut(s)	449
AjuI	GAANNNNNNNTTGG	2 cut(s)	1202, 1234
AluBI	AGCT	9 cut(s)	80, 262, 436, 466, 776, 919, 1176, 1198, 1243
AluI	AGCT	9 cut(s)	80, 262, 436, 466, 776, 919, 1176, 1198, 1243
Alw26I	GTCTC	3 cut(s)	63, 640, 1067
AlwI	GGATC	3 cut(s)	363, 835, 1336
AlwNI	CAGNNNCTG	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	919, 1009
ApoI	RAATTY	1 cut(s)	1251
ArsI	GACNNNNNNTTYG	2 cut(s)	771, 803
Asp700I	GAANNNNTTC	1 cut(s)	1214
BbsI	GAAGAC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	906, 996
BccI	CCATC	3 cut(s)	643, 787, 993
BceAI	ACGGC	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	753
BclI	TGATCA	1 cut(s)	1020
BcoDI	GTCTC	3 cut(s)	63, 640, 1067
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	7 cut(s)	230, 678, 777, 903, 914, 1040, 1244
BfuI	GTATCC	1 cut(s)	753
BisI	GCNGC	3 cut(s)	599, 920, 1010
BlsI	GCNGC	3 cut(s)	600, 921, 1011
BmcAI	AGTACT	1 cut(s)	96
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	838
BmsI	GCATC	2 cut(s)	682, 1302
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	1184
Bpu10I	CCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	3 cut(s)	456, 1134, 1259
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	2 cut(s)	343, 1290
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	1351
Bse1I	ACTGG	2 cut(s)	395, 588
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	343, 1290
BseGI	GGATG	5 cut(s)	654, 798, 802, 1004, 1099
BseLI	CCNNNNNNNGG	1 cut(s)	1351
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	105, 428, 528
BseNI	ACTGG	2 cut(s)	395, 588
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	906, 996
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	1351
BsmAI	GTCTC	3 cut(s)	63, 640, 1067
BsmI	GAATGC	2 cut(s)	10, 312
Bso31I	GGTCTC	1 cut(s)	1067
Bsp143I	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
Bsp19I	CCATGG	2 cut(s)	343, 1290
BspACI	CCGC	2 cut(s)	598, 846
BspCNI	CTCAG	3 cut(s)	104, 429, 527
BspLI	GGNNCC	1 cut(s)	838
BspPI	GGATC	3 cut(s)	363, 835, 1336
BspTNI	GGTCTC	1 cut(s)	1067
BsrBI	CCGCTC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	395, 588
BssECI	CCNNGG	2 cut(s)	343, 1290
BssMI	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
BssT1I	CCWWGG	2 cut(s)	343, 1290
Bst4CI	ACNGT	2 cut(s)	1233, 1271
Bst6I	CTCTTC	1 cut(s)	489
BstAPI	GCANNNNNTGC	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	7 cut(s)	91, 102, 168, 174, 437, 494, 514
BstDSI	CCRYGG	2 cut(s)	343, 1290
BstF5I	GGATG	5 cut(s)	654, 798, 802, 1004, 1099
BstKTI	GATC	8 cut(s)	154, 358, 411, 667, 830, 1023, 1069, 1344
BstMAI	GTCTC	3 cut(s)	63, 640, 1067
BstMBI	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 1009
BstNSI	RCATGY	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	906, 996
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	3 cut(s)	355, 827, 1341
BstYI	RGATCY	3 cut(s)	355, 827, 1341
BsuI	GTATCC	1 cut(s)	753
BtgI	CCRYGG	2 cut(s)	343, 1290
BtgZI	GCGATG	1 cut(s)	616
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	5 cut(s)	654, 798, 802, 1004, 1099
BtsIMutI	CAGTG	2 cut(s)	297, 402
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	401
CseI	GACGC	1 cut(s)	1314
Csp6I	GTAC	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	7 cut(s)	118, 208, 278, 344, 933, 1057, 1291
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	7 cut(s)	91, 102, 168, 174, 437, 494, 514
DpnI	GATC	8 cut(s)	153, 357, 410, 666, 829, 1022, 1068, 1343
DpnII	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
DraI	TTTAAA	1 cut(s)	378
DriI	GACNNNNNGTC	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	489
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	343, 1290
Eco31I	GGTCTC	1 cut(s)	1067
EcoT14I	CCWWGG	2 cut(s)	343, 1290
ErhI	CCWWGG	2 cut(s)	343, 1290
FaeI	CATG	7 cut(s)	121, 211, 281, 347, 936, 1060, 1294
FalI	AAGNNNNNCTT	2 cut(s)	1202, 1234
FatI	CATG	7 cut(s)	117, 207, 277, 343, 932, 1056, 1290
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	1020
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	599, 920, 1010
FokI	GGATG	5 cut(s)	641, 805, 809, 1011, 1106
Fsp4HI	GCNGC	3 cut(s)	599, 920, 1010
FspBI	CTAG	7 cut(s)	230, 678, 777, 903, 914, 1040, 1244
GluI	GCNGC	3 cut(s)	599, 920, 1010
GsuI	CTGGAG	1 cut(s)	1184
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	1314
Hin1II	CATG	7 cut(s)	121, 211, 281, 347, 936, 1060, 1294
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	464
HpaII	CCGG	1 cut(s)	184
Hpy166II	GTNNAC	4 cut(s)	29, 220, 675, 1264
Hpy188I	TCNGA	4 cut(s)	659, 792, 878, 1020
Hpy8I	GTNNAC	4 cut(s)	29, 220, 675, 1264
Hpy99I	CGWCG	1 cut(s)	1121
HpyAV	CCTTC	2 cut(s)	902, 1150
HpyCH4III	ACNGT	2 cut(s)	1233, 1271
HpyCH4IV	ACGT	3 cut(s)	241, 333, 448
HpyCH4V	TGCA	3 cut(s)	330, 404, 1282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 1009
HpyF3I	CTNAG	7 cut(s)	91, 102, 168, 174, 437, 494, 514
HpySE526I	ACGT	3 cut(s)	241, 333, 448
Hsp92II	CATG	7 cut(s)	121, 211, 281, 347, 936, 1060, 1294
Ksp22I	TGATCA	1 cut(s)	1020
Kzo9I	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
LmnI	GCTCC	2 cut(s)	595, 700
LpnPI	CCDG	8 cut(s)	45, 197, 408, 414, 569, 582, 708, 1148
Lsp1109I	GCAGC	2 cut(s)	906, 996
LweI	GCATC	2 cut(s)	682, 1302
MaeI	CTAG	7 cut(s)	230, 678, 777, 903, 914, 1040, 1244
MaeII	ACGT	3 cut(s)	241, 333, 448
MaeIII	GTNAC	1 cut(s)	1227
MalI	GATC	8 cut(s)	153, 357, 410, 666, 829, 1022, 1068, 1343
MbiI	CCGCTC	1 cut(s)	598
MboI	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
MboII	GAAGA	7 cut(s)	124, 240, 476, 590, 621, 779, 1045
MflI	RGATCY	3 cut(s)	355, 827, 1341
MluCI	AATT	4 cut(s)	202, 224, 520, 1251
MlyI	GAGTC	3 cut(s)	283, 506, 774
MmeI	TCCRAC	4 cut(s)	302, 508, 526, 738
MroXI	GAANNNNTTC	1 cut(s)	1214
MseI	TTAA	6 cut(s)	377, 414, 432, 519, 753, 1358
MslI	CAYNNNNRTG	4 cut(s)	282, 1055, 1295, 1333
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	1 cut(s)	184
Mva1269I	GAATGC	2 cut(s)	10, 312
MwoI	GCNNNNNNNGC	2 cut(s)	235, 1009
NcoI	CCATGG	2 cut(s)	343, 1290
NdeII	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
NlaIII	CATG	7 cut(s)	121, 211, 281, 347, 936, 1060, 1294
NlaIV	GGNNCC	1 cut(s)	838
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	2 cut(s)	10, 312
PdmI	GAANNNNTTC	1 cut(s)	1214
PfeI	GAWTC	7 cut(s)	193, 302, 761, 873, 888, 1201, 1303
PkrI	GCNGC	3 cut(s)	600, 921, 1011
PleI	GAGTC	3 cut(s)	282, 506, 774
PpsI	GAGTC	3 cut(s)	282, 506, 774
PscI	ACATGT	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	355, 827, 1341
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	4 cut(s)	282, 1055, 1295, 1333
SaqAI	TTAA	6 cut(s)	377, 414, 432, 519, 753, 1358
SatI	GCNGC	3 cut(s)	599, 920, 1010
Sau3AI	GATC	8 cut(s)	151, 355, 408, 664, 827, 1020, 1066, 1341
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	3 cut(s)	283, 506, 774
SfaNI	GCATC	2 cut(s)	682, 1302
SmiMI	CAYNNNNRTG	4 cut(s)	282, 1055, 1295, 1333
SmlI	CTYRAG	3 cut(s)	471, 1149, 1238
SmoI	CTYRAG	3 cut(s)	471, 1149, 1238
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	4 cut(s)	202, 224, 520, 1251
SsiI	CCGC	2 cut(s)	598, 846
SspMI	CTAG	7 cut(s)	230, 678, 777, 903, 914, 1040, 1244
StyI	CCWWGG	2 cut(s)	343, 1290
TaaI	ACNGT	2 cut(s)	1233, 1271
TaiI	ACGT	3 cut(s)	244, 336, 451
TaqI	TCGA	5 cut(s)	289, 576, 771, 954, 1065
TasI	AATT	4 cut(s)	202, 224, 520, 1251
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	601
TfiI	GAWTC	7 cut(s)	193, 302, 761, 873, 888, 1201, 1303
Tru1I	TTAA	6 cut(s)	377, 414, 432, 519, 753, 1358
Tru9I	TTAA	6 cut(s)	377, 414, 432, 519, 753, 1358
TscAI	CASTG	2 cut(s)	304, 402
TseI	GCWGC	2 cut(s)	919, 1009
TspDTI	ATGAA	7 cut(s)	17, 294, 358, 675, 813, 1045, 1223
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	304, 402
XapI	RAATTY	1 cut(s)	1251
XbaI	TCTAGA	1 cut(s)	913
XceI	RCATGY	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	1214
XspI	CTAG	7 cut(s)	230, 678, 777, 903, 914, 1040, 1244
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.