AT2G42720

transcription, DNA-templated

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
17785354 .. 17787421
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42720.1

Sequence Viewer

Length: 1332 bp
ATGGATAGAATCAGCTCTTTACCAGATGAGATTCTTGAGCACATTTTATCCTTTCTCTCCACAAAAGAGGCTGCTTTAACCTCATCGCTCTCTACGAGGTGGAAGAATGTGTTTGTTTTTGTTCCTAGTCTTCACCTTGATTACGCTAGACAACATGAAAATCCGAGAGAATTCATTGATTTTGTGGATTTTGTGAATACTTTGTTCAATCGGAAAGGCAATTCTCCTATAAAGAAGCTTGCTTTAAAGATTCATCTCAAAGATAATCAATCTCTCCAAAACCAAACTCATGTTCAGAGCTGGATACACAGAGTCCTTTCTCGTGGTGGTGTGACGGATCTTGATCTCTTTATCACTTTCAAAGGAAAATTTCAACTTGTGCCTTTGTTGATCTTCAAGAGCAATACACTGGTTAAGCTGAGACTAGGACGTGGTTTTACAATCAAGCTTTGTCATGAAAATGTTTATCTTCCTATGCTTAAGACTTTATGTCTTGACACTGTTGATTTTGATGGAGATCATAATGTCTTTGAAACTCTTCTTCCTCGTTGCCCTCTGCTTGAAGAATTGGTTCTTGAGGATCAGCGATGGAAACAATGGTGTGGTTCTGTGTCTTCTCCATCTCTAAAGAGACTACGCATCCGATTCTTTCATATCCCCATTATTTCGCTTGATGTTCCCGGTCTTGTCTACTTGGAACTTTCTTGTATATTTGGGAGCAAGTATGCAAATGTTAACTTGGATTCCCTCGTTGAGGCTAGACTCAATCATTGGGTGGAAGAACAAGAATTACGGAAACTAAGAGATGGGTCTTCTCATCTAGTTCCTGCTGACATGATGGATCTCATCACTGGAATCAGAAAGGTTAAGGTTCTTCACTTAACTAGTGATGCTCTTGAGCTGTTTTACTTCTCCGGTCAAGAATTACCCATGTTCGACAACCTTGTTTATCTATCGATCGCGAGTGACAAGAAGCAAGGATGGCAAATTCTGCCACTTCTGATCAAGAACTCTCCAAATCTTGAAACACTTGTCTTCAAGGGTCTAGAGCACTACACAACTAAACAATGTGGGGATGCATGTGTTTGTTCTGGCATTTTGGGGAAGAGCTCGTCTTGTCTGTCATCATCTCGAGTAAAGGTTCTGGAGATATGGAGCTATCAAGGAACTTCGAAAGAGCTGAAACAAATGGGGCATTTCCTAATGAAGTTACAATTTCTTGAGCTGGTGAAAATTCGTGCTGTAAGCAACCTCCAAGTGCCCATTGATATACAGTATCTTTTGAAGCTTCCAAGAGCTTCTTCAAACTGCAAAATCCAAGCCATATTTTAA

Protein Analysis

443

Amino Acids

50.73

Weight (kDa)

8.86

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 38 2.7e-08 F-box domain
LRR_At5g56370 PF24758 100 - 296 2.3e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 159 - 185 2.4e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 690
AccII CGCG 1 cut(s) 962
AclWI GGATC 3 cut(s) 345, 588, 849
AcsI RAATTY 4 cut(s) 170, 368, 987, 1233
AfiI CCNNNNNNNGG 1 cut(s) 754
AflII CTTAAG 1 cut(s) 479
AhdI GACNNNNNGTC 1 cut(s) 489
AhlI ACTAGT 1 cut(s) 884
AjiI CACGTC 1 cut(s) 431
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 308, 1285, 1317
Alw21I GWGCWC 3 cut(s) 42, 1053, 1112
Alw26I GTCTC 2 cut(s) 415, 625
AlwI GGATC 3 cut(s) 345, 588, 849
Ama87I CYCGRG 1 cut(s) 1131
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 4 cut(s) 170, 368, 987, 1233
Asp700I GAANNNNTTC 2 cut(s) 537, 570
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 2 cut(s) 125, 1240
AsuII TTCGAA 1 cut(s) 1172
AvaI CYCGRG 1 cut(s) 1131
BaeGI GKGCMC 1 cut(s) 1263
BanII GRGCYC 1 cut(s) 1112
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 4 cut(s) 122, 606, 804, 1027
Bbv12I GWGCWC 3 cut(s) 42, 1053, 1112
BbvI GCAGC 1 cut(s) 58
BccI CCATC 6 cut(s) 506, 582, 628, 800, 832, 975
BciVI GTATCC 1 cut(s) 297
BclI TGATCA 1 cut(s) 1002
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 2 cut(s) 415, 625
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 7 cut(s) 126, 147, 425, 759, 821, 885, 1046
BfrI CTTAAG 1 cut(s) 479
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 681
BmeRI GACNNNNNGTC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 1131
BmgBI CACGTC 1 cut(s) 431
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 3 cut(s) 648, 880, 1066
BpiI GAAGAC 4 cut(s) 122, 606, 804, 1027
BpmI CTGGAG 1 cut(s) 1166
Bpu14I TTCGAA 1 cut(s) 1172
BpuEI CTTGAG 4 cut(s) 56, 596, 917, 1241
BpuMI CCSGG 1 cut(s) 681
Bsa29I ATCGAT 1 cut(s) 956
BsaBI GATNNNNATC 2 cut(s) 342, 516
BsaWI WCCGGW 1 cut(s) 914
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 414, 856
Bse8I GATNNNNATC 2 cut(s) 342, 516
BseCI ATCGAT 1 cut(s) 956
BseGI GGATG 3 cut(s) 639, 986, 1081
BseJI GATNNNNATC 2 cut(s) 342, 516
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 2 cut(s) 414, 856
BseSI GKGCMC 1 cut(s) 1263
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 962
Bsh1285I CGRYCG 1 cut(s) 960
BshVI ATCGAT 1 cut(s) 956
BsiEI CGRYCG 1 cut(s) 960
BsiHKAI GWGCWC 3 cut(s) 42, 1053, 1112
BsiHKCI CYCGRG 1 cut(s) 1131
BsiSI CCGG 2 cut(s) 681, 915
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 2 cut(s) 415, 625
BsoBI CYCGRG 1 cut(s) 1131
Bsp119I TTCGAA 1 cut(s) 1172
Bsp1286I GDGCHC 4 cut(s) 42, 1053, 1112, 1263
Bsp143I GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
Bsp68I TCGCGA 1 cut(s) 962
BspCNI CTCAG 1 cut(s) 411
BspDI ATCGAT 1 cut(s) 956
BspFNI CGCG 1 cut(s) 962
BspHI TCATGA 1 cut(s) 454
BspPI GGATC 3 cut(s) 345, 588, 849
BspQI GCTCTTC 1 cut(s) 1100
BspT104I TTCGAA 1 cut(s) 1172
BspTI CTTAAG 1 cut(s) 479
BsrI ACTGG 2 cut(s) 414, 856
BssMI GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 502, 1275
Bst6I CTCTTC 2 cut(s) 543, 1100
BstAFI CTTAAG 1 cut(s) 479
BstAPI GCANNNNNTGC 1 cut(s) 991
BstBI TTCGAA 1 cut(s) 1172
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 419, 800
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 3 cut(s) 639, 986, 1081
BstFNI CGCG 1 cut(s) 962
BstKTI GATC 8 cut(s) 340, 346, 393, 520, 583, 844, 960, 1005
BstMAI GTCTC 2 cut(s) 415, 625
BstMBI GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
BstMCI CGRYCG 1 cut(s) 960
BstMWI GCNNNNNNNGC 2 cut(s) 982, 991
BstNSI RCATGY 1 cut(s) 1083
BstSCI CCNGG 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 1263
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 4 cut(s) 122, 606, 804, 1027
BstX2I RGATCY 2 cut(s) 337, 841
BstYI RGATCY 2 cut(s) 337, 841
Bsu15I ATCGAT 1 cut(s) 956
BsuI GTATCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 956
BtgZI GCGATG 2 cut(s) 69, 601
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 3 cut(s) 639, 986, 1081
BtsIMutI CAGTG 3 cut(s) 407, 498, 849
BtuMI TCGCGA 1 cut(s) 962
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 454
ClaI ATCGAT 1 cut(s) 956
CviAII CATG 6 cut(s) 155, 290, 455, 835, 931, 1080
DdeI CTNAG 2 cut(s) 419, 800
DpnI GATC 8 cut(s) 339, 345, 392, 519, 582, 843, 959, 1004
DpnII GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
DraI TTTAAA 1 cut(s) 246
DriI GACNNNNNGTC 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 543, 1100
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 2 cut(s) 543, 1100
Ecl136II GAGCTC 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 1112
Eco53kI GAGCTC 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 1131
EcoICRI GAGCTC 1 cut(s) 1110
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 1081
EcoT38I GRGCYC 1 cut(s) 1112
FaeI CATG 6 cut(s) 158, 293, 458, 838, 934, 1083
FalI AAGNNNNNCTT 2 cut(s) 1285, 1317
FatI CATG 6 cut(s) 154, 289, 454, 834, 930, 1079
FbaI TGATCA 1 cut(s) 1002
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 3 cut(s) 626, 993, 1088
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 7 cut(s) 126, 147, 425, 759, 821, 885, 1046
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 1166
HapII CCGG 2 cut(s) 681, 915
Hin1II CATG 6 cut(s) 158, 293, 458, 838, 934, 1083
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 3 cut(s) 236, 446, 1286
HinfI GANTC 8 cut(s) 9, 31, 250, 312, 645, 743, 762, 855
HpaI GTTAAC 1 cut(s) 736
HpaII CCGG 2 cut(s) 681, 915
HphI GGTGA 2 cut(s) 125, 1240
Hpy166II GTNNAC 2 cut(s) 691, 736
Hpy188I TCNGA 6 cut(s) 165, 213, 297, 644, 860, 1002
Hpy8I GTNNAC 2 cut(s) 691, 736
HpyCH4III ACNGT 2 cut(s) 502, 1275
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 728, 1079, 1311
HpyF10VI GCNNNNNNNGC 2 cut(s) 982, 991
HpyF3I CTNAG 2 cut(s) 419, 800
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 6 cut(s) 158, 293, 458, 838, 934, 1083
Ksp22I TGATCA 1 cut(s) 1002
KspAI GTTAAC 1 cut(s) 736
Kzo9I GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
LguI GCTCTTC 1 cut(s) 1100
LmnI GCTCC 2 cut(s) 717, 1155
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 3 cut(s) 648, 880, 1066
MaeI CTAG 7 cut(s) 126, 147, 425, 759, 821, 885, 1046
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 3 cut(s) 331, 965, 1209
MalI GATC 8 cut(s) 339, 345, 392, 519, 582, 843, 959, 1004
MboI GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
MflI RGATCY 2 cut(s) 337, 841
MhlI GDGCHC 4 cut(s) 42, 1053, 1112, 1263
MluCI AATT 9 cut(s) 170, 220, 368, 566, 788, 923, 987, 1214, 1233
MlyI GAGTC 2 cut(s) 321, 756
MnlI CCTC 9 cut(s) 61, 90, 91, 555, 564, 571, 748, 758, 1262
Mph1103I ATGCAT 1 cut(s) 1081
MroXI GAANNNNTTC 2 cut(s) 537, 570
MseI TTAA 8 cut(s) 77, 245, 414, 480, 735, 867, 881, 1330
MslI CAYNNNNRTG 1 cut(s) 459
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 2 cut(s) 681, 915
MspR9I CCNGG 1 cut(s) 681
MvnI CGCG 1 cut(s) 962
MwoI GCNNNNNNNGC 2 cut(s) 982, 991
NciI CCSGG 1 cut(s) 681
NdeII GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
NlaIII CATG 6 cut(s) 158, 293, 458, 838, 934, 1083
NmuCI GTSAC 2 cut(s) 331, 965
NruI TCGCGA 1 cut(s) 962
NsiI ATGCAT 1 cut(s) 1081
NspI RCATGY 1 cut(s) 1083
NspV TTCGAA 1 cut(s) 1172
PaeR7I CTCGAG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 1100
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdmI GAANNNNTTC 2 cut(s) 537, 570
PfeI GAWTC 6 cut(s) 9, 31, 250, 645, 743, 855
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 960
PleI GAGTC 2 cut(s) 320, 756
PpsI GAGTC 2 cut(s) 320, 756
Psp124BI GAGCTC 1 cut(s) 1112
PsrI GAACNNNNNNTAC 2 cut(s) 774, 806
PsuI RGATCY 2 cut(s) 337, 841
PvuI CGATCG 1 cut(s) 960
RruI TCGCGA 1 cut(s) 962
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 1112
SapI GCTCTTC 1 cut(s) 1100
SaqAI TTAA 8 cut(s) 77, 245, 414, 480, 735, 867, 881, 1330
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 8 cut(s) 337, 343, 390, 517, 580, 841, 957, 1002
SchI GAGTC 2 cut(s) 321, 756
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 4 cut(s) 42, 1053, 1112, 1263
SfaNI GCATC 3 cut(s) 648, 880, 1066
Sfr274I CTCGAG 1 cut(s) 1131
SfuI TTCGAA 1 cut(s) 1172
SlaI CTCGAG 1 cut(s) 1131
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 6 cut(s) 35, 479, 575, 896, 1131, 1220
SmoI CTYRAG 6 cut(s) 35, 479, 575, 896, 1131, 1220
SpeI ACTAGT 1 cut(s) 884
Sse9I AATT 9 cut(s) 170, 220, 368, 566, 788, 923, 987, 1214, 1233
SspMI CTAG 7 cut(s) 126, 147, 425, 759, 821, 885, 1046
SstI GAGCTC 1 cut(s) 1112
StyD4I CCNGG 1 cut(s) 679
TaaI ACNGT 2 cut(s) 502, 1275
TaiI ACGT 1 cut(s) 433
TaqI TCGA 4 cut(s) 936, 956, 1132, 1172
TasI AATT 9 cut(s) 170, 220, 368, 566, 788, 923, 987, 1214, 1233
TfiI GAWTC 6 cut(s) 9, 31, 250, 645, 743, 855
Tru1I TTAA 8 cut(s) 77, 245, 414, 480, 735, 867, 881, 1330
Tru9I TTAA 8 cut(s) 77, 245, 414, 480, 735, 867, 881, 1330
TscAI CASTG 3 cut(s) 414, 505, 856
TseFI GTSAC 2 cut(s) 331, 965
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 2 cut(s) 331, 965
TspDTI ATGAA 6 cut(s) 163, 171, 242, 471, 641, 1220
TspGWI ACGGA 2 cut(s) 350, 808
TspRI CASTG 3 cut(s) 414, 505, 856
Vha464I CTTAAG 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 4 cut(s) 170, 368, 987, 1233
XbaI TCTAGA 1 cut(s) 1045
XceI RCATGY 1 cut(s) 1083
XhoI CTCGAG 1 cut(s) 1131
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 2 cut(s) 537, 570
XspI CTAG 7 cut(s) 126, 147, 425, 759, 821, 885, 1046
Zsp2I ATGCAT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.