transcription, DNA-templated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 690 |
| AccII | CGCG | 1 cut(s) | 962 |
| AclWI | GGATC | 3 cut(s) | 345, 588, 849 |
| AcsI | RAATTY | 4 cut(s) | 170, 368, 987, 1233 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 754 |
| AflII | CTTAAG | 1 cut(s) | 479 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 489 |
| AhlI | ACTAGT | 1 cut(s) | 884 |
| AjiI | CACGTC | 1 cut(s) | 431 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 276, 308, 1285, 1317 |
| Alw21I | GWGCWC | 3 cut(s) | 42, 1053, 1112 |
| Alw26I | GTCTC | 2 cut(s) | 415, 625 |
| AlwI | GGATC | 3 cut(s) | 345, 588, 849 |
| Ama87I | CYCGRG | 1 cut(s) | 1131 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| ApoI | RAATTY | 4 cut(s) | 170, 368, 987, 1233 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 537, 570 |
| AsuC2I | CCSGG | 1 cut(s) | 681 |
| AsuHPI | GGTGA | 2 cut(s) | 125, 1240 |
| AsuII | TTCGAA | 1 cut(s) | 1172 |
| AvaI | CYCGRG | 1 cut(s) | 1131 |
| BaeGI | GKGCMC | 1 cut(s) | 1263 |
| BanII | GRGCYC | 1 cut(s) | 1112 |
| BauI | CACGAG | 1 cut(s) | 321 |
| BbsI | GAAGAC | 4 cut(s) | 122, 606, 804, 1027 |
| Bbv12I | GWGCWC | 3 cut(s) | 42, 1053, 1112 |
| BbvI | GCAGC | 1 cut(s) | 58 |
| BccI | CCATC | 6 cut(s) | 506, 582, 628, 800, 832, 975 |
| BciVI | GTATCC | 1 cut(s) | 297 |
| BclI | TGATCA | 1 cut(s) | 1002 |
| BcnI | CCSGG | 1 cut(s) | 681 |
| BcoDI | GTCTC | 2 cut(s) | 415, 625 |
| BcuI | ACTAGT | 1 cut(s) | 884 |
| BfaI | CTAG | 7 cut(s) | 126, 147, 425, 759, 821, 885, 1046 |
| BfrI | CTTAAG | 1 cut(s) | 479 |
| BfuI | GTATCC | 1 cut(s) | 297 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| Bme1390I | CCNGG | 1 cut(s) | 681 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 489 |
| BmeT110I | CYCGRG | 1 cut(s) | 1131 |
| BmgBI | CACGTC | 1 cut(s) | 431 |
| BmrFI | CCNGG | 1 cut(s) | 681 |
| BmsI | GCATC | 3 cut(s) | 648, 880, 1066 |
| BpiI | GAAGAC | 4 cut(s) | 122, 606, 804, 1027 |
| BpmI | CTGGAG | 1 cut(s) | 1166 |
| Bpu14I | TTCGAA | 1 cut(s) | 1172 |
| BpuEI | CTTGAG | 4 cut(s) | 56, 596, 917, 1241 |
| BpuMI | CCSGG | 1 cut(s) | 681 |
| Bsa29I | ATCGAT | 1 cut(s) | 956 |
| BsaBI | GATNNNNATC | 2 cut(s) | 342, 516 |
| BsaWI | WCCGGW | 1 cut(s) | 914 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 754 |
| Bse1I | ACTGG | 2 cut(s) | 414, 856 |
| Bse8I | GATNNNNATC | 2 cut(s) | 342, 516 |
| BseCI | ATCGAT | 1 cut(s) | 956 |
| BseGI | GGATG | 3 cut(s) | 639, 986, 1081 |
| BseJI | GATNNNNATC | 2 cut(s) | 342, 516 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 754 |
| BseMII | CTCAG | 1 cut(s) | 410 |
| BseNI | ACTGG | 2 cut(s) | 414, 856 |
| BseSI | GKGCMC | 1 cut(s) | 1263 |
| BseXI | GCAGC | 1 cut(s) | 58 |
| Bsh1236I | CGCG | 1 cut(s) | 962 |
| Bsh1285I | CGRYCG | 1 cut(s) | 960 |
| BshVI | ATCGAT | 1 cut(s) | 956 |
| BsiEI | CGRYCG | 1 cut(s) | 960 |
| BsiHKAI | GWGCWC | 3 cut(s) | 42, 1053, 1112 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1131 |
| BsiSI | CCGG | 2 cut(s) | 681, 915 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 754 |
| BsmAI | GTCTC | 2 cut(s) | 415, 625 |
| BsoBI | CYCGRG | 1 cut(s) | 1131 |
| Bsp119I | TTCGAA | 1 cut(s) | 1172 |
| Bsp1286I | GDGCHC | 4 cut(s) | 42, 1053, 1112, 1263 |
| Bsp143I | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| Bsp68I | TCGCGA | 1 cut(s) | 962 |
| BspCNI | CTCAG | 1 cut(s) | 411 |
| BspDI | ATCGAT | 1 cut(s) | 956 |
| BspFNI | CGCG | 1 cut(s) | 962 |
| BspHI | TCATGA | 1 cut(s) | 454 |
| BspPI | GGATC | 3 cut(s) | 345, 588, 849 |
| BspQI | GCTCTTC | 1 cut(s) | 1100 |
| BspT104I | TTCGAA | 1 cut(s) | 1172 |
| BspTI | CTTAAG | 1 cut(s) | 479 |
| BsrI | ACTGG | 2 cut(s) | 414, 856 |
| BssMI | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| BssSI | CACGAG | 1 cut(s) | 321 |
| Bst2BI | CACGAG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 2 cut(s) | 502, 1275 |
| Bst6I | CTCTTC | 2 cut(s) | 543, 1100 |
| BstAFI | CTTAAG | 1 cut(s) | 479 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 991 |
| BstBI | TTCGAA | 1 cut(s) | 1172 |
| BstC8I | GCNNGC | 1 cut(s) | 240 |
| BstDEI | CTNAG | 2 cut(s) | 419, 800 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 752 |
| BstF5I | GGATG | 3 cut(s) | 639, 986, 1081 |
| BstFNI | CGCG | 1 cut(s) | 962 |
| BstKTI | GATC | 8 cut(s) | 340, 346, 393, 520, 583, 844, 960, 1005 |
| BstMAI | GTCTC | 2 cut(s) | 415, 625 |
| BstMBI | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| BstMCI | CGRYCG | 1 cut(s) | 960 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 982, 991 |
| BstNSI | RCATGY | 1 cut(s) | 1083 |
| BstSCI | CCNGG | 1 cut(s) | 679 |
| BstSLI | GKGCMC | 1 cut(s) | 1263 |
| BstUI | CGCG | 1 cut(s) | 962 |
| BstV1I | GCAGC | 1 cut(s) | 58 |
| BstV2I | GAAGAC | 4 cut(s) | 122, 606, 804, 1027 |
| BstX2I | RGATCY | 2 cut(s) | 337, 841 |
| BstYI | RGATCY | 2 cut(s) | 337, 841 |
| Bsu15I | ATCGAT | 1 cut(s) | 956 |
| BsuI | GTATCC | 1 cut(s) | 297 |
| BsuTUI | ATCGAT | 1 cut(s) | 956 |
| BtgZI | GCGATG | 2 cut(s) | 69, 601 |
| BtrI | CACGTC | 1 cut(s) | 431 |
| BtsCI | GGATG | 3 cut(s) | 639, 986, 1081 |
| BtsIMutI | CAGTG | 3 cut(s) | 407, 498, 849 |
| BtuMI | TCGCGA | 1 cut(s) | 962 |
| Cac8I | GCNNGC | 1 cut(s) | 240 |
| CciI | TCATGA | 1 cut(s) | 454 |
| ClaI | ATCGAT | 1 cut(s) | 956 |
| CviAII | CATG | 6 cut(s) | 155, 290, 455, 835, 931, 1080 |
| DdeI | CTNAG | 2 cut(s) | 419, 800 |
| DpnI | GATC | 8 cut(s) | 339, 345, 392, 519, 582, 843, 959, 1004 |
| DpnII | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| DraI | TTTAAA | 1 cut(s) | 246 |
| DriI | GACNNNNNGTC | 1 cut(s) | 489 |
| Eam1104I | CTCTTC | 2 cut(s) | 543, 1100 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 489 |
| EarI | CTCTTC | 2 cut(s) | 543, 1100 |
| Ecl136II | GAGCTC | 1 cut(s) | 1110 |
| Eco24I | GRGCYC | 1 cut(s) | 1112 |
| Eco53kI | GAGCTC | 1 cut(s) | 1110 |
| Eco88I | CYCGRG | 1 cut(s) | 1131 |
| EcoICRI | GAGCTC | 1 cut(s) | 1110 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 752 |
| EcoRI | GAATTC | 1 cut(s) | 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 1081 |
| EcoT38I | GRGCYC | 1 cut(s) | 1112 |
| FaeI | CATG | 6 cut(s) | 158, 293, 458, 838, 934, 1083 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1285, 1317 |
| FatI | CATG | 6 cut(s) | 154, 289, 454, 834, 930, 1079 |
| FbaI | TGATCA | 1 cut(s) | 1002 |
| FblI | GTMKAC | 1 cut(s) | 690 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| FokI | GGATG | 3 cut(s) | 626, 993, 1088 |
| FriOI | GRGCYC | 1 cut(s) | 1112 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| FspBI | CTAG | 7 cut(s) | 126, 147, 425, 759, 821, 885, 1046 |
| GluI | GCNGC | 1 cut(s) | 72 |
| GsuI | CTGGAG | 1 cut(s) | 1166 |
| HapII | CCGG | 2 cut(s) | 681, 915 |
| Hin1II | CATG | 6 cut(s) | 158, 293, 458, 838, 934, 1083 |
| HincII | GTYRAC | 1 cut(s) | 736 |
| HindII | GTYRAC | 1 cut(s) | 736 |
| HindIII | AAGCTT | 3 cut(s) | 236, 446, 1286 |
| HinfI | GANTC | 8 cut(s) | 9, 31, 250, 312, 645, 743, 762, 855 |
| HpaI | GTTAAC | 1 cut(s) | 736 |
| HpaII | CCGG | 2 cut(s) | 681, 915 |
| HphI | GGTGA | 2 cut(s) | 125, 1240 |
| Hpy166II | GTNNAC | 2 cut(s) | 691, 736 |
| Hpy188I | TCNGA | 6 cut(s) | 165, 213, 297, 644, 860, 1002 |
| Hpy8I | GTNNAC | 2 cut(s) | 691, 736 |
| HpyCH4III | ACNGT | 2 cut(s) | 502, 1275 |
| HpyCH4IV | ACGT | 1 cut(s) | 430 |
| HpyCH4V | TGCA | 3 cut(s) | 728, 1079, 1311 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 982, 991 |
| HpyF3I | CTNAG | 2 cut(s) | 419, 800 |
| HpySE526I | ACGT | 1 cut(s) | 430 |
| Hsp92II | CATG | 6 cut(s) | 158, 293, 458, 838, 934, 1083 |
| Ksp22I | TGATCA | 1 cut(s) | 1002 |
| KspAI | GTTAAC | 1 cut(s) | 736 |
| Kzo9I | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| LguI | GCTCTTC | 1 cut(s) | 1100 |
| LmnI | GCTCC | 2 cut(s) | 717, 1155 |
| Lsp1109I | GCAGC | 1 cut(s) | 58 |
| LweI | GCATC | 3 cut(s) | 648, 880, 1066 |
| MaeI | CTAG | 7 cut(s) | 126, 147, 425, 759, 821, 885, 1046 |
| MaeII | ACGT | 1 cut(s) | 430 |
| MaeIII | GTNAC | 3 cut(s) | 331, 965, 1209 |
| MalI | GATC | 8 cut(s) | 339, 345, 392, 519, 582, 843, 959, 1004 |
| MboI | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| MflI | RGATCY | 2 cut(s) | 337, 841 |
| MhlI | GDGCHC | 4 cut(s) | 42, 1053, 1112, 1263 |
| MluCI | AATT | 9 cut(s) | 170, 220, 368, 566, 788, 923, 987, 1214, 1233 |
| MlyI | GAGTC | 2 cut(s) | 321, 756 |
| MnlI | CCTC | 9 cut(s) | 61, 90, 91, 555, 564, 571, 748, 758, 1262 |
| Mph1103I | ATGCAT | 1 cut(s) | 1081 |
| MroXI | GAANNNNTTC | 2 cut(s) | 537, 570 |
| MseI | TTAA | 8 cut(s) | 77, 245, 414, 480, 735, 867, 881, 1330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 459 |
| MspCI | CTTAAG | 1 cut(s) | 479 |
| MspI | CCGG | 2 cut(s) | 681, 915 |
| MspR9I | CCNGG | 1 cut(s) | 681 |
| MvnI | CGCG | 1 cut(s) | 962 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 982, 991 |
| NciI | CCSGG | 1 cut(s) | 681 |
| NdeII | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| NlaIII | CATG | 6 cut(s) | 158, 293, 458, 838, 934, 1083 |
| NmuCI | GTSAC | 2 cut(s) | 331, 965 |
| NruI | TCGCGA | 1 cut(s) | 962 |
| NsiI | ATGCAT | 1 cut(s) | 1081 |
| NspI | RCATGY | 1 cut(s) | 1083 |
| NspV | TTCGAA | 1 cut(s) | 1172 |
| PaeR7I | CTCGAG | 1 cut(s) | 1131 |
| PagI | TCATGA | 1 cut(s) | 454 |
| PciSI | GCTCTTC | 1 cut(s) | 1100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 92 |
| PdmI | GAANNNNTTC | 2 cut(s) | 537, 570 |
| PfeI | GAWTC | 6 cut(s) | 9, 31, 250, 645, 743, 855 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| Ple19I | CGATCG | 1 cut(s) | 960 |
| PleI | GAGTC | 2 cut(s) | 320, 756 |
| PpsI | GAGTC | 2 cut(s) | 320, 756 |
| Psp124BI | GAGCTC | 1 cut(s) | 1112 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 774, 806 |
| PsuI | RGATCY | 2 cut(s) | 337, 841 |
| PvuI | CGATCG | 1 cut(s) | 960 |
| RruI | TCGCGA | 1 cut(s) | 962 |
| RseI | CAYNNNNRTG | 1 cut(s) | 459 |
| SacI | GAGCTC | 1 cut(s) | 1112 |
| SapI | GCTCTTC | 1 cut(s) | 1100 |
| SaqAI | TTAA | 8 cut(s) | 77, 245, 414, 480, 735, 867, 881, 1330 |
| SatI | GCNGC | 1 cut(s) | 72 |
| Sau3AI | GATC | 8 cut(s) | 337, 343, 390, 517, 580, 841, 957, 1002 |
| SchI | GAGTC | 2 cut(s) | 321, 756 |
| ScrFI | CCNGG | 1 cut(s) | 681 |
| SduI | GDGCHC | 4 cut(s) | 42, 1053, 1112, 1263 |
| SfaNI | GCATC | 3 cut(s) | 648, 880, 1066 |
| Sfr274I | CTCGAG | 1 cut(s) | 1131 |
| SfuI | TTCGAA | 1 cut(s) | 1172 |
| SlaI | CTCGAG | 1 cut(s) | 1131 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 459 |
| SmlI | CTYRAG | 6 cut(s) | 35, 479, 575, 896, 1131, 1220 |
| SmoI | CTYRAG | 6 cut(s) | 35, 479, 575, 896, 1131, 1220 |
| SpeI | ACTAGT | 1 cut(s) | 884 |
| Sse9I | AATT | 9 cut(s) | 170, 220, 368, 566, 788, 923, 987, 1214, 1233 |
| SspMI | CTAG | 7 cut(s) | 126, 147, 425, 759, 821, 885, 1046 |
| SstI | GAGCTC | 1 cut(s) | 1112 |
| StyD4I | CCNGG | 1 cut(s) | 679 |
| TaaI | ACNGT | 2 cut(s) | 502, 1275 |
| TaiI | ACGT | 1 cut(s) | 433 |
| TaqI | TCGA | 4 cut(s) | 936, 956, 1132, 1172 |
| TasI | AATT | 9 cut(s) | 170, 220, 368, 566, 788, 923, 987, 1214, 1233 |
| TfiI | GAWTC | 6 cut(s) | 9, 31, 250, 645, 743, 855 |
| Tru1I | TTAA | 8 cut(s) | 77, 245, 414, 480, 735, 867, 881, 1330 |
| Tru9I | TTAA | 8 cut(s) | 77, 245, 414, 480, 735, 867, 881, 1330 |
| TscAI | CASTG | 3 cut(s) | 414, 505, 856 |
| TseFI | GTSAC | 2 cut(s) | 331, 965 |
| TseI | GCWGC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 2 cut(s) | 331, 965 |
| TspDTI | ATGAA | 6 cut(s) | 163, 171, 242, 471, 641, 1220 |
| TspGWI | ACGGA | 2 cut(s) | 350, 808 |
| TspRI | CASTG | 3 cut(s) | 414, 505, 856 |
| Vha464I | CTTAAG | 1 cut(s) | 479 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 752 |
| XapI | RAATTY | 4 cut(s) | 170, 368, 987, 1233 |
| XbaI | TCTAGA | 1 cut(s) | 1045 |
| XceI | RCATGY | 1 cut(s) | 1083 |
| XhoI | CTCGAG | 1 cut(s) | 1131 |
| XmiI | GTMKAC | 1 cut(s) | 690 |
| XmnI | GAANNNNTTC | 2 cut(s) | 537, 570 |
| XspI | CTAG | 7 cut(s) | 126, 147, 425, 759, 821, 885, 1046 |
| Zsp2I | ATGCAT | 1 cut(s) | 1081 |