Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000813

Physical Location & Seq

Genomic Coordinates Forward (+)

21872831 .. 21874422

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGAAGCTAACAAAAAAGCGAAACCTAGTTATGGCGATGTGATTAGCAATTTACCAAATGATCTTCTCTGCCGAATCTTATCTTACCTTTCAACAAAAGAGGCAGCTTTAACATCGATACTCTCAAAGCGCTGGTCGAATCTACTTCTATCGATACCTATTCTCGATTTCGACGATTCCGTGTTACTGAAACCCCAAAAGGGTCAACGAAAAAATGTTTTTTTCAAGGCTTTCGTCGATAGGTTACTCTCTCAACGAGTCGAGACTTCATCACATGTTCAAAGAGTCTCTCTCAAGTGTCGTCAAGGAGGTGTTGAACCAGATTGTGTAATCAAGTGGATACTAACAACAGTAAGGGATCTTGGTGTCTTGGATCTTTCTCTATGCATTGATTTTGGAATCTTTCATTTGCCATTTAATGTCTTTAGGAGCAAGACTTTGGTCAAACTTAGAATTGGAACAATGATCCGTCTTTCTCAGTTTCCTTCAGATGTTGTTTCTCCGACGCTTAATTCTCTTGTTCTTGATTTGGTTGAGTTTCGTGATGGTGATAAGGTTGAGTTTAGACAGATTCTGTTAGCTTTTCCTTCACTTCAAAGCCTGCGGGTTCATGAATCTAACAAGTGGAAGTTTTGGAATGGTTCTGCTTCAAGTCGAACGCTTAAGAGTCTTGTATATAGAAGTGATGATGATTCCTCTGCTCCTAAACCTTGTGTTTCGTTTGATACTCCGAGTCTTGTTTACTTGGACTATTCTGATATGGTTGCGGATAAGTATGAAAATCTGAAATTTGACAGCCTTGTTGAAGCTAGGCTTGATCTTCATTTGACCGCTTTTCAAATCATGCGCAAACCAAATAATATTGGTATTGTTTCTGGTGATGTAACAACCTTGTTCAAGGGGATCAGAAATGTCAAGATCCTCTGCTTATCTCCGGATGCTTTAGAGGCGCTCTATTACCGTGGTGAAAAGATACCAATGTTCAACAATTTGATTACTTTATCTCTGGGAAGCGATAAACCTCATGGTTCACCATTCATCTTCTGGAAATTGCTTCCATCTCTGCTCAACAACTCTCTTAAACTAGAAACTCTCATCATCAAGGGTCTAGTGCATTATGTTGCTGAAGGATGGGAAGGTTTGAGTCCTATGACTCCTATGAGCCGTCTCTGCTTTTCATGGGATACTGTGTCTGATTCTCTGTCATCATCTGCGATGAAGGTTTTAGAGATCAGTGGGTATAAAGGAACTTGGCAAGAGCTGAATCAAATGAAGCGTTTCTTGGGGAATCTATCGCGTCTTGAAGTGGTTAGGGTTTACCATAAGGCAATGGATGATAAGGAAAGAATTAACGTCATGTTTGATCTTTTTCTTCTTCCCAAAGTTTCATCTGAATGCGATATCCAAGTCATGAAGGAAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0033993 GO:0034243 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090351 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05016 map05016

Pfam Domains

Protein Families

Med26 TFIIS_C TFIIS_M

Protein Analysis

475

Amino Acids

53.87

Weight (kDa)

8.91

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 53	2.5e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G56610 AT1G56610 AT1G56610 AT1G58310 AT2G42720 AT2G42730 AT3G42770 AT3G44060 AT3G44080 AT3G44090 AT3G44180 AT3G44810 AT3G49150 AT3G54160 AT3G58920 AT3G58960 AT3G58980 AT3G59150 AT3G59160 AT3G59170 AT3G59180 AT3G59190 AT3G59190 AT3G59200 AT3G59200 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59230 AT3G59240 AT3G59250 AT3G59270 AT3G59460 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G62430 AT3G62440 AT4G00320 AT4G14096 AT4G14096 AT4G14103 AT4G14103 AT4G14103 AT4G22280 AT4G22280 AT5G15620 AT5G25860 AT5G35926 AT5G35926 AT5G40050 AT5G41630 AT5G41830 AT5G41830 AT5G41840

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G06630 AT1G56610 AT1G56610 AT1G56610 AT1G58310 AT2G42720 AT2G42730 AT3G42770 AT3G44060 AT3G44080 AT3G44090 AT3G44180 AT3G44810 AT3G49150 AT3G54160 AT3G58920 AT3G58960 AT3G58980 AT3G59150 AT3G59160 AT3G59170 AT3G59180 AT3G59190 AT3G59190 AT3G59200 AT3G59200 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59210 AT3G59230 AT3G59240 AT3G59250 AT3G59270 AT3G59460 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G60040 AT3G62430 AT3G62440 AT4G00320 AT4G14096 AT4G14096 AT4G14103 AT4G14103 AT4G14103 AT4G22280 AT4G22280 AT5G15620 AT5G25860 AT5G35926 AT5G35926 AT5G40050 AT5G41630 AT5G41830 AT5G41830 AT5G41840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	848
AccII	CGCG	1 cut(s)	1297
AccIII	TCCGGA	1 cut(s)	934
AciI	CCGC	3 cut(s)	604, 767, 831
AclWI	GGATC	5 cut(s)	366, 381, 460, 911, 913
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	2 cut(s)	471, 1146
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	32, 200
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	1265, 1297
AluBI	AGCT	5 cut(s)	8, 107, 581, 809, 1261
AluI	AGCT	5 cut(s)	8, 107, 581, 809, 1261
Alw26I	GTCTC	3 cut(s)	257, 292, 1172
AlwI	GGATC	5 cut(s)	366, 381, 460, 911, 913
AlwNI	CAGNNNCTG	1 cut(s)	574
Aor13HI	TCCGGA	1 cut(s)	934
Aor51HI	AGCGCT	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	788
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
Asp700I	GAANNNNTTC	1 cut(s)	1277
AspLEI	GCGC	3 cut(s)	132, 849, 952
AsuHPI	GGTGA	4 cut(s)	560, 890, 977, 1023
BaeI	ACNNNNGTAYC	2 cut(s)	965, 998
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	3 cut(s)	539, 1066, 1125
BceAI	ACGGC	1 cut(s)	1149
BciVI	GTATCC	2 cut(s)	333, 1177
BcoDI	GTCTC	3 cut(s)	257, 292, 1172
BfaI	CTAG	4 cut(s)	27, 810, 1085, 1109
BfoI	RGCGCY	2 cut(s)	133, 953
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	2 cut(s)	333, 1177
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	928
BoxI	GACNNNNGTC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	2 cut(s)	116, 152
BsaJI	CCNNGG	1 cut(s)	961
BsaWI	WCCGGW	1 cut(s)	934
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 200
Bse3DI	GCAATG	1 cut(s)	1335
BseAI	TCCGGA	1 cut(s)	934
BseCI	ATCGAT	2 cut(s)	116, 152
BseDI	CCNNGG	1 cut(s)	961
BseGI	GGATG	3 cut(s)	943, 1136, 1339
BseLI	CCNNNNNNNGG	2 cut(s)	32, 200
BseMI	GCAATG	1 cut(s)	1335
BseMII	CTCAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	1297
BshVI	ATCGAT	2 cut(s)	116, 152
BsiSI	CCGG	1 cut(s)	935
BslI	CCNNNNNNNGG	2 cut(s)	32, 200
BsmAI	GTCTC	3 cut(s)	257, 292, 1172
BsmBI	CGTCTC	1 cut(s)	1172
BsmI	GAATGC	1 cut(s)	1400
Bsp13I	TCCGGA	1 cut(s)	934
Bsp143I	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
BspACI	CCGC	3 cut(s)	604, 767, 831
BspCNI	CTCAG	1 cut(s)	490
BspDI	ATCGAT	2 cut(s)	116, 152
BspEI	TCCGGA	1 cut(s)	934
BspFNI	CGCG	1 cut(s)	1297
BspHI	TCATGA	2 cut(s)	610, 1410
BspPI	GGATC	5 cut(s)	366, 381, 460, 911, 913
BspTI	CTTAAG	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	1335
BssECI	CCNNGG	1 cut(s)	961
BssMI	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
Bst4CI	ACNGT	3 cut(s)	352, 962, 1189
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	449, 477
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	3 cut(s)	943, 1136, 1339
BstFNI	CGCG	1 cut(s)	1297
BstH2I	RGCGCY	2 cut(s)	133, 953
BstHHI	GCGC	3 cut(s)	132, 849, 952
BstKTI	GATC	9 cut(s)	64, 361, 376, 468, 820, 906, 921, 1233, 1366
BstMAI	GTCTC	3 cut(s)	257, 292, 1172
BstMBI	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
BstMWI	GCNNNNNNNGC	2 cut(s)	947, 1170
BstNSI	RCATGY	1 cut(s)	278
BstPAI	GACNNNNGTC	1 cut(s)	440
BstUI	CGCG	1 cut(s)	1297
BstV1I	GCAGC	1 cut(s)	116
BstX2I	RGATCY	3 cut(s)	358, 373, 918
BstYI	RGATCY	3 cut(s)	358, 373, 918
Bsu15I	ATCGAT	2 cut(s)	116, 152
BsuI	GTATCC	2 cut(s)	333, 1177
BsuTUI	ATCGAT	2 cut(s)	116, 152
BtgI	CCRYGG	1 cut(s)	961
BtgZI	GCGATG	2 cut(s)	51, 1229
BtsCI	GGATG	3 cut(s)	943, 1136, 1339
BtsIMutI	CAGTG	1 cut(s)	1240
Cac8I	GCNNGC	1 cut(s)	602
CaiI	CAGNNNCTG	1 cut(s)	574
CciI	TCATGA	2 cut(s)	610, 1410
CfoI	GCGC	3 cut(s)	132, 849, 952
ClaI	ATCGAT	2 cut(s)	116, 152
CseI	GACGC	2 cut(s)	514, 1286
CviAII	CATG	7 cut(s)	275, 611, 844, 1025, 1179, 1357, 1411
DdeI	CTNAG	2 cut(s)	449, 477
DpnI	GATC	9 cut(s)	63, 360, 375, 467, 819, 905, 920, 1232, 1365
DpnII	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
Eco32I	GATATC	1 cut(s)	1402
Eco47III	AGCGCT	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	471, 1146
EcoRV	GATATC	1 cut(s)	1402
EcoT22I	ATGCAT	1 cut(s)	389
Esp3I	CGTCTC	1 cut(s)	1172
FaeI	CATG	7 cut(s)	278, 614, 847, 1028, 1182, 1360, 1414
FalI	AAGNNNNNCTT	4 cut(s)	798, 830, 1265, 1297
FatI	CATG	7 cut(s)	274, 610, 843, 1024, 1178, 1356, 1410
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	950, 1143, 1346
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	4 cut(s)	27, 810, 1085, 1109
FspI	TGCGCA	1 cut(s)	848
GlaI	GCGC	3 cut(s)	131, 848, 951
GluI	GCNGC	1 cut(s)	105
HaeII	RGCGCY	2 cut(s)	133, 953
HapII	CCGG	1 cut(s)	935
HgaI	GACGC	2 cut(s)	514, 1286
HhaI	GCGC	3 cut(s)	132, 849, 952
Hin1II	CATG	7 cut(s)	278, 614, 847, 1028, 1182, 1360, 1414
Hin6I	GCGC	3 cut(s)	130, 847, 950
HinP1I	GCGC	3 cut(s)	130, 847, 950
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	4 cut(s)	560, 890, 977, 1023
Hpy166II	GTNNAC	4 cut(s)	206, 742, 1031, 1318
Hpy188I	TCNGA	8 cut(s)	490, 504, 732, 757, 786, 908, 1195, 1393
Hpy8I	GTNNAC	4 cut(s)	206, 742, 1031, 1318
Hpy99I	CGWCG	3 cut(s)	176, 239, 508
HpyAV	CCTTC	6 cut(s)	495, 597, 1121, 1130, 1213, 1408
HpyCH4III	ACNGT	3 cut(s)	352, 962, 1189
HpyCH4IV	ACGT	1 cut(s)	1353
HpyCH4V	TGCA	2 cut(s)	387, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	947, 1170
HpyF3I	CTNAG	2 cut(s)	449, 477
HpySE526I	ACGT	1 cut(s)	1353
Hsp92II	CATG	7 cut(s)	278, 614, 847, 1028, 1182, 1360, 1414
HspAI	GCGC	3 cut(s)	130, 847, 950
Kpn2I	TCCGGA	1 cut(s)	934
Kzo9I	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
LmnI	GCTCC	2 cut(s)	429, 706
LpnPI	CCDG	7 cut(s)	118, 333, 614, 861, 948, 992, 1030
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	928
MaeI	CTAG	4 cut(s)	27, 810, 1085, 1109
MaeII	ACGT	1 cut(s)	1353
MaeIII	GTNAC	3 cut(s)	183, 243, 883
MalI	GATC	9 cut(s)	63, 360, 375, 467, 819, 905, 920, 1232, 1365
MboI	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
MboII	GAAGA	5 cut(s)	56, 812, 1033, 1364, 1367
MflI	RGATCY	3 cut(s)	358, 373, 918
MluCI	AATT	7 cut(s)	49, 453, 511, 788, 988, 1049, 1347
MlyI	GAGTC	6 cut(s)	267, 294, 676, 742, 1147, 1153
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	6 cut(s)	94, 302, 706, 932, 940, 1032
Mph1103I	ATGCAT	1 cut(s)	389
MroI	TCCGGA	1 cut(s)	934
MroXI	GAANNNNTTC	1 cut(s)	1277
MseI	TTAA	6 cut(s)	110, 417, 510, 663, 1080, 1350
MslI	CAYNNNNRTG	1 cut(s)	1393
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	935
Mva1269I	GAATGC	1 cut(s)	1400
MvnI	CGCG	1 cut(s)	1297
MwoI	GCNNNNNNNGC	2 cut(s)	947, 1170
NdeII	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
NlaIII	CATG	7 cut(s)	278, 614, 847, 1028, 1182, 1360, 1414
NsbI	TGCGCA	1 cut(s)	848
NsiI	ATGCAT	1 cut(s)	389
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	2 cut(s)	610, 1410
PciI	ACATGT	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 177
PctI	GAATGC	1 cut(s)	1400
PdmI	GAANNNNTTC	1 cut(s)	1277
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	6 cut(s)	266, 293, 675, 741, 1147, 1152
PpsI	GAGTC	6 cut(s)	266, 293, 675, 741, 1147, 1152
PscI	ACATGT	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	574
PsuI	RGATCY	3 cut(s)	358, 373, 918
RseI	CAYNNNNRTG	1 cut(s)	1393
SaqAI	TTAA	6 cut(s)	110, 417, 510, 663, 1080, 1350
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	9 cut(s)	61, 358, 373, 465, 817, 903, 918, 1230, 1363
SchI	GAGTC	6 cut(s)	267, 294, 676, 742, 1147, 1153
SfaNI	GCATC	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	1393
SmlI	CTYRAG	2 cut(s)	293, 662
SmoI	CTYRAG	2 cut(s)	293, 662
Sse9I	AATT	7 cut(s)	49, 453, 511, 788, 988, 1049, 1347
SsiI	CCGC	3 cut(s)	604, 767, 831
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	4 cut(s)	27, 810, 1085, 1109
TaaI	ACNGT	3 cut(s)	352, 962, 1189
TaiI	ACGT	1 cut(s)	1356
TaqI	TCGA	8 cut(s)	116, 137, 152, 165, 171, 237, 261, 655
TasI	AATT	7 cut(s)	49, 453, 511, 788, 988, 1049, 1347
Tru1I	TTAA	6 cut(s)	110, 417, 510, 663, 1080, 1350
Tru9I	TTAA	6 cut(s)	110, 417, 510, 663, 1080, 1350
TscAI	CASTG	1 cut(s)	1240
TseI	GCWGC	1 cut(s)	104
TspGWI	ACGGA	2 cut(s)	169, 458
TspRI	CASTG	1 cut(s)	1240
Vha464I	CTTAAG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1041
XmnI	GAANNNNTTC	1 cut(s)	1277
XspI	CTAG	4 cut(s)	27, 810, 1085, 1109
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.