AT3G60040

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
22175852 .. 22179728
3877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60040.1

Sequence Viewer

Length: 2517 bp
ATGGGAATTGGCTGGTCCCTGCATAATAGGGATGGAACACAGATACTTCATGGTTCGGGTGCTATACACCCAACCCAAAGTCCAACAGAAGCCGAAGCGGAGGCCCTTCGTCTTGCAGTTCTTGATCTTCGTCGACTGGGTTATTCACATGTCACATTCTGCGGAGATCTCAAGCTCATATATGATACGCTGCAAAGATGTGCACTACGGGGAAACAATGCATCATGGAAGTACCTCCATATTGCAACCTATCTAGCTGACGTTCTTAAAATCTCAAAGCTTTGCAGCTTTAACTTTATTCATATTTCTCGTGACGCAAATGATATAGCAGATAGGTTAGCAAAACAGGCTCGATGTAATGGTCTTGACTATGTAATTTGTTGGACTTCATCTTCTCTTGTTTTGAATGTGAAACAACGTAATTACGTAACTGATATCTACAATGATGTCAACAATATTAGCAGCATCAATGCCTTCCAAGATTTAGCAGGGTCATTGGATGAACTCAAAACAACAAGTTTCATTGTCGTTTTGACGTTCTGGGTTTGTTTCCTTATTAAGACTCCGATCAAATTTCGAATCGAGGGGACAACGCCATCATTCTCTGGATCTGTTTTCGCCCTTCTCCACGATTCAGTTTCAGGCACTTTTATCTCTATGGATGCCAAAATGTTTGACACAATCTGCTCGAGAGATGCGATCAGCTGGCTCCCTGACGAGGTTCTGGGTAAAATATTGTCTTTAATCCCCACCAAACAGGCTGTTTCAACATCTCTCCTTGCTAAAAAGTGGAGGACTATCTTTAGATTGGTGGATCATCTCGAGTTAGATGACTCTTTCTCGCTGCAAGCCGTAAAGGACCAAACACCAGGTCTCCGTAAACATGTGAGGTTTGTGTTTACGGAGGACTTCAAGATTTTTGTGGATCGAACTCTGGCTTTGCAATGTGATTATCCGATCAAGAATTTCTCTCTAAAATGCCACGTTAGCAAGTACGATGAGCGTCAGAAAGCTTGTGTTGGCCGCTGGATATCTAATGTCGTAGGGCGCGGTGTTTTTGAACTGGACCTAAGGATGAAAGATCCAGGTATACACTTTCTGCCTCCTCATCTCGTCGCAAGCAAAACACTGGTTAAGCTGACGCTAGGCACACAGCTCTGTCTTGGACAGCTTCCTTCATATGTGTCACTTCCATCTCTTAAGTCTCTCTTCATTGATACGATAGTTTTCTACGACATTGAAGATTTGTGTTGTGTGCTACTTGCTGGTTGCCCCGTGCTTGAGGAGTTATCAGTTCATCACCATGACTTTATAGCAACGCCTCACACCATATCGAGTCCAACCCTTAAGAGACTATCAGTTGATTACCATTGTCCTGATGATGTTGATAGTGCTAGTCATATGTCATTTGACCTCCCAAAACTTGTCTACCTTGAGTATTCTCACTGCGCCTTGGGTGAGTATTGGCAAATTAATCTGGAGTCCCTTGTCGAAGCTAAGCTGGACCTTGGTCTGGAAAGAAAGGTCCTAAGGATGGATGTAACGGATCTCATTATAGGGATAAGAAACGTCCAGAGCCTGCATCTTTCTCCTGATTCTGTTCATGTGATTTATTCATACTGTAGACATGGGCTCCCGGTGTTTAAGAATCTTGTTAATCTATCTTTTGGGAGTAAGAATAAGCGAGGTTGGAGATTACTGGCAAATCTGCTTAAGCAGTCTACGAAGCTTGAAACTCTAATTGTCAAGGATCTAAATGGTTACACTGGCGATGTCTCCATGCCTCTGAACAAAGTGACGTCGCTGCATATTCTTGGTTATCGAGGAACTGCGGATGAGGTTAAACAATTGAAGAGCTTTATAGGGGAATTCGAATGTCTTGAACTGGTTCAAGTGGATGTTGCAGAAGCTGCAGAGGATAATGGCAAAATATTGCAAAGCAAAAGGGATCTAATGATGCTGCTTGGAGTTTCACTTCCATCCAAGTGCCAGTTCAAATCAGTTCTAGATGAATTGAATGTTCGAGTCTCAGGGATTTTAGTGATAGGGGTTCTTGATGGCACACAGTTACTTCTTATCATTTTGCTGCACATTTTGGGGAAAGGGAATAAACCGCTCGCTGCTCTTACTACGTTGAACCATATGAAGGAAGTAGGAATCGACCCGAGTGTCCTCCACTACACTACTTTGATAGACGGGTATGTTGTATCTGGAGAGCTCGACAAGGCAAAGGAGATGTTTAGAGAGATGACAGTGAAAGGGCAATTACCGAATGTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGGAGAGTTCAGAGAGGCGTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAGTACATTGGTGGGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAGGCTCGCAAGGTAATAAAAGAGATGGTGAAGAAAGGACATTATGTTCATTTAGTTTCAAAGATGATGAAATATAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

838

Amino Acids

94.19

Weight (kDa)

8.45

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 117 3e-11 Reverse transcriptase-like
F-box PF00646 234 - 271 2.2e-06 F-box domain
LRR_At5g56370 PF24758 341 - 457 3.3e-10 FBD-associated F-box protein At5g56370, LRR repeats
PPR_long PF17177 707 - 822 3.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 712 - 766 9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 719 - 751 2e-07 PPR repeat
PPR_2 PF13041 722 - 770 1.9e-15 PPR repeat family
PPR PF01535 726 - 754 4.8e-07 PPR repeat
PPR_1 PF12854 753 - 786 1.9e-10 PPR repeat
PPR_2 PF13041 757 - 801 3.1e-13 PPR repeat family
PPR PF01535 760 - 790 1.7e-09 PPR repeat
PPR_1 PF12854 788 - 821 9.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2168
AatII GACGTC 1 cut(s) 1802
AccBSI CCGCTC 1 cut(s) 2116
AccI GTMKAC 5 cut(s) 133, 1090, 1428, 1624, 1721
AccII CGCG 2 cut(s) 1050, 2301
AciI CCGC 8 cut(s) 98, 162, 1024, 1050, 1832, 2114, 2301, 2315
AclWI GGATC 7 cut(s) 616, 822, 933, 1076, 1554, 1758, 1956
AcoI YGGCCR 1 cut(s) 1021
AcsI RAATTY 4 cut(s) 572, 964, 1868, 2377
AcyI GRCGYC 1 cut(s) 1799
AfaI GTAC 3 cut(s) 233, 995, 2395
AfiI CCNNNNNNNGG 4 cut(s) 718, 1513, 1534, 2146
AflII CTTAAG 3 cut(s) 1199, 1346, 1712
AflIII ACRYGT 2 cut(s) 148, 883
AjnI CCWGG 2 cut(s) 868, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 1976, 2008
AloI GAACNNNNNNTCC 2 cut(s) 2463, 2495
Alw21I GWGCWC 2 cut(s) 205, 2220
Alw26I GTCTC 5 cut(s) 878, 1209, 1345, 1780, 2032
Alw44I GTGCAC 1 cut(s) 201
AlwI GGATC 7 cut(s) 616, 822, 933, 1076, 1554, 1758, 1956
AlwNI CAGNNNCTG 2 cut(s) 1579, 1910
Ama87I CYCGRG 3 cut(s) 688, 821, 2164
AoxI GGCC 2 cut(s) 102, 1021
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 9 cut(s) 190, 285, 462, 844, 1804, 1910, 1960, 2086, 2120
ApoI RAATTY 4 cut(s) 572, 964, 1868, 2377
ArsI GACNNNNNNTTYG 2 cut(s) 856, 888
AseI ATTAAT 1 cut(s) 1473
Asp700I GAANNNNTTC 2 cut(s) 1887, 2276
AspLEI GCGC 2 cut(s) 1050, 1451
AspS9I GGNCC 6 cut(s) 15, 103, 859, 1066, 1504, 1525
AsuC2I CCSGG 1 cut(s) 1637
AsuHPI GGTGA 3 cut(s) 1292, 1469, 2473
AsuII TTCGAA 2 cut(s) 577, 1872
AvaI CYCGRG 3 cut(s) 688, 821, 2164
AvaII GGWCC 5 cut(s) 15, 859, 1066, 1504, 1525
AxyI CCTNAGG 2 cut(s) 1070, 1529
BaeGI GKGCMC 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 1209, 1242
BanII GRGCYC 2 cut(s) 1635, 2220
BauI CACGAG 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 205, 2220
BbvI GCAGC 9 cut(s) 177, 297, 474, 831, 1791, 1897, 1947, 2073, 2107
BccI CCATC 7 cut(s) 26, 604, 1201, 1528, 1987, 2051, 2452
BceAI ACGGC 1 cut(s) 836
BciT130I CCWGG 2 cut(s) 870, 1086
BcnI CCSGG 1 cut(s) 1637
BcoDI GTCTC 5 cut(s) 878, 1209, 1345, 1780, 2032
BfaI CTAG 5 cut(s) 254, 1145, 1395, 2006, 2361
BfmI CTRYAG 2 cut(s) 1621, 1911
BfrI CTTAAG 3 cut(s) 1199, 1346, 1712
BglII AGATCT 1 cut(s) 166
BlpI GCTNAGC 1 cut(s) 1497
Bme1390I CCNGG 3 cut(s) 870, 1086, 1637
Bme18I GGWCC 5 cut(s) 15, 859, 1066, 1504, 1525
BmeT110I CYCGRG 3 cut(s) 688, 821, 2164
BmgT120I GGNCC 6 cut(s) 15, 103, 859, 1066, 1504, 1525
BmiI GGNNCC 3 cut(s) 17, 710, 1634
BmrFI CCNGG 3 cut(s) 870, 1086, 1637
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 6 cut(s) 230, 474, 652, 685, 1591, 1947
BmuI ACTGGG 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 1509
BpmI CTGGAG 2 cut(s) 1499, 2232
Bpu1102I GCTNAGC 1 cut(s) 1497
Bpu14I TTCGAA 2 cut(s) 577, 1872
BpuEI CTTGAG 3 cut(s) 155, 1301, 1454
BpuMI CCSGG 1 cut(s) 1637
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 1799
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 1452, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 858, 888, 1617, 1647
Bsc4I CCNNNNNNNGG 4 cut(s) 718, 1513, 1534, 2146
Bse1I ACTGG 7 cut(s) 141, 1068, 1134, 1704, 1771, 1890, 1990
Bse21I CCTNAGG 2 cut(s) 1070, 1529
Bse3DI GCAATG 1 cut(s) 950
BseBI CCWGG 2 cut(s) 870, 1086
BseDI CCNNGG 2 cut(s) 1452, 1507
BseGI GGATG 9 cut(s) 37, 505, 667, 1080, 1539, 1543, 1840, 1903, 1979
BseLI CCNNNNNNNGG 4 cut(s) 718, 1513, 1534, 2146
BseMI GCAATG 1 cut(s) 950
BseMII CTCAG 1 cut(s) 2043
BseNI ACTGG 7 cut(s) 141, 1068, 1134, 1704, 1771, 1890, 1990
BseRI GAGGAG 2 cut(s) 1095, 1298
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 9 cut(s) 177, 297, 474, 831, 1791, 1897, 1947, 2073, 2107
BsgI GTGCAG 1 cut(s) 2072
Bsh1236I CGCG 2 cut(s) 1050, 2301
BshFI GGCC 2 cut(s) 104, 1023
BsiHKAI GWGCWC 2 cut(s) 205, 2220
BsiHKCI CYCGRG 3 cut(s) 688, 821, 2164
BsiSI CCGG 1 cut(s) 1637
BslFI GGGAC 2 cut(s) 601, 1468
BslI CCNNNNNNNGG 4 cut(s) 718, 1513, 1534, 2146
BsmAI GTCTC 5 cut(s) 878, 1209, 1345, 1780, 2032
BsmFI GGGAC 2 cut(s) 601, 1468
BsnI GGCC 2 cut(s) 104, 1023
Bso31I GGTCTC 1 cut(s) 878
BsoBI CYCGRG 3 cut(s) 688, 821, 2164
Bsp119I TTCGAA 2 cut(s) 577, 1872
Bsp1286I GDGCHC 3 cut(s) 205, 1635, 2220
Bsp1720I GCTNAGC 1 cut(s) 1497
BspACI CCGC 8 cut(s) 98, 162, 1024, 1050, 1832, 2114, 2301, 2315
BspANI GGCC 2 cut(s) 104, 1023
BspCNI CTCAG 1 cut(s) 2042
BspFNI CGCG 2 cut(s) 1050, 2301
BspLI GGNNCC 3 cut(s) 17, 710, 1634
BspMAI CTGCAG 1 cut(s) 1915
BspPI GGATC 7 cut(s) 616, 822, 933, 1076, 1554, 1758, 1956
BspQI GCTCTTC 1 cut(s) 1847
BspT104I TTCGAA 2 cut(s) 577, 1872
BspTI CTTAAG 3 cut(s) 1199, 1346, 1712
BspTNI GGTCTC 1 cut(s) 878
BsrBI CCGCTC 1 cut(s) 2116
BsrDI GCAATG 1 cut(s) 950
BsrI ACTGG 7 cut(s) 141, 1068, 1134, 1704, 1771, 1890, 1990
BssECI CCNNGG 2 cut(s) 1452, 1507
BssNAI GTATAC 1 cut(s) 1091
BssNI GRCGYC 1 cut(s) 1799
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 1452, 1507
Bst1107I GTATAC 1 cut(s) 1091
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 870, 1086
Bst4CI ACNGT 3 cut(s) 1622, 2067, 2254
Bst6I CTCTTC 2 cut(s) 1214, 1847
BstACI GRCGYC 1 cut(s) 1799
BstAFI CTTAAG 3 cut(s) 1199, 1346, 1712
BstAPI GCANNNNNTGC 1 cut(s) 1910
BstBAI YACGTR 1 cut(s) 427
BstBI TTCGAA 2 cut(s) 577, 1872
BstC8I GCNNGC 6 cut(s) 707, 849, 1120, 1580, 2118, 2440
BstDEI CTNAG 4 cut(s) 1070, 1497, 1529, 2029
BstF5I GGATG 9 cut(s) 37, 505, 667, 1080, 1539, 1543, 1840, 1903, 1979
BstFNI CGCG 2 cut(s) 1050, 2301
BstHHI GCGC 2 cut(s) 1050, 1451
BstMAI GTCTC 5 cut(s) 878, 1209, 1345, 1780, 2032
BstMWI GCNNNNNNNGC 3 cut(s) 347, 987, 1910
BstNI CCWGG 2 cut(s) 870, 1086
BstNSI RCATGY 2 cut(s) 152, 887
BstPAI GACNNNNGTC 1 cut(s) 1509
BstSCI CCNGG 3 cut(s) 868, 1084, 1635
BstSFI CTRYAG 2 cut(s) 1621, 1911
BstSLI GKGCMC 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 427
BstUI CGCG 2 cut(s) 1050, 2301
BstV1I GCAGC 9 cut(s) 177, 297, 474, 831, 1791, 1897, 1947, 2073, 2107
BstX2I RGATCY 6 cut(s) 166, 608, 1081, 1546, 1750, 1948
BstYI RGATCY 6 cut(s) 166, 608, 1081, 1546, 1750, 1948
BstZ17I GTATAC 1 cut(s) 1091
Bsu36I CCTNAGG 2 cut(s) 1070, 1529
BsuRI GGCC 2 cut(s) 104, 1023
BtgZI GCGATG 1 cut(s) 1785
BtsCI GGATG 9 cut(s) 37, 505, 667, 1080, 1539, 1543, 1840, 1903, 1979
BtsI GCAGTG 1 cut(s) 1444
BtsIMutI CAGTG 4 cut(s) 1127, 1444, 1764, 2259
Cac8I GCNNGC 6 cut(s) 707, 849, 1120, 1580, 2118, 2440
CaiI CAGNNNCTG 2 cut(s) 1579, 1910
CfoI GCGC 2 cut(s) 1050, 1451
Cfr13I GGNCC 6 cut(s) 15, 103, 859, 1066, 1504, 1525
CseI GACGC 3 cut(s) 323, 992, 1150
CsiI ACCWGGT 1 cut(s) 868
Csp6I GTAC 3 cut(s) 232, 994, 2394
CviAII CATG 8 cut(s) 50, 149, 225, 884, 1304, 1604, 1628, 1780
CviQI GTAC 3 cut(s) 232, 994, 2394
DdeI CTNAG 4 cut(s) 1070, 1497, 1529, 2029
DrdI GACNNNNNNGTC 1 cut(s) 2168
DseDI GACNNNNNNGTC 1 cut(s) 2168
EaeI YGGCCR 1 cut(s) 1021
Eam1104I CTCTTC 2 cut(s) 1214, 1847
EarI CTCTTC 2 cut(s) 1214, 1847
Ecl136II GAGCTC 1 cut(s) 2218
Eco105I TACGTA 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 1452, 1507
Eco24I GRGCYC 2 cut(s) 1635, 2220
Eco31I GGTCTC 1 cut(s) 878
Eco32I GATATC 2 cut(s) 436, 1032
Eco47I GGWCC 5 cut(s) 15, 859, 1066, 1504, 1525
Eco53kI GAGCTC 1 cut(s) 2218
Eco81I CCTNAGG 2 cut(s) 1070, 1529
Eco88I CYCGRG 3 cut(s) 688, 821, 2164
EcoICRI GAGCTC 1 cut(s) 2218
EcoO109I RGGNCCY 2 cut(s) 103, 1525
EcoRI GAATTC 1 cut(s) 1868
EcoRII CCWGG 2 cut(s) 868, 1084
EcoRV GATATC 2 cut(s) 436, 1032
EcoT14I CCWWGG 2 cut(s) 1452, 1507
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 1635, 2220
ErhI CCWWGG 2 cut(s) 1452, 1507
FaeI CATG 8 cut(s) 53, 152, 228, 887, 1307, 1607, 1631, 1783
FalI AAGNNNNNCTT 2 cut(s) 1193, 1225
FaqI GGGAC 2 cut(s) 601, 1468
FatI CATG 8 cut(s) 49, 148, 224, 883, 1303, 1603, 1627, 1779
FauI CCCGC 2 cut(s) 2294, 2308
FauNDI CATATG 3 cut(s) 1180, 1401, 2142
FblI GTMKAC 5 cut(s) 133, 1090, 1428, 1624, 1721
FokI GGATG 9 cut(s) 44, 512, 674, 1087, 1546, 1550, 1847, 1910, 1966
FriOI GRGCYC 2 cut(s) 1635, 2220
FspBI CTAG 5 cut(s) 254, 1145, 1395, 2006, 2361
GlaI GCGC 2 cut(s) 1049, 1450
GsuI CTGGAG 2 cut(s) 1499, 2232
HaeIII GGCC 2 cut(s) 104, 1023
HapII CCGG 1 cut(s) 1637
HgaI GACGC 3 cut(s) 323, 992, 1150
HhaI GCGC 2 cut(s) 1050, 1451
Hin1I GRCGYC 1 cut(s) 1799
Hin1II CATG 8 cut(s) 53, 152, 228, 887, 1307, 1607, 1631, 1783
Hin6I GCGC 2 cut(s) 1048, 1449
HinP1I GCGC 2 cut(s) 1048, 1449
HincII GTYRAC 2 cut(s) 134, 451
HindII GTYRAC 2 cut(s) 134, 451
HindIII AAGCTT 4 cut(s) 278, 1011, 1727, 2426
HpaII CCGG 1 cut(s) 1637
HphI GGTGA 3 cut(s) 1292, 1469, 2473
Hpy166II GTNNAC 9 cut(s) 134, 203, 451, 881, 900, 1091, 1429, 1625, 1722
Hpy188I TCNGA 6 cut(s) 567, 957, 1008, 1788, 2327, 2434
Hpy8I GTNNAC 9 cut(s) 134, 203, 451, 881, 900, 1091, 1429, 1625, 1722
Hpy99I CGWCG 3 cut(s) 135, 1118, 1804
HpyAV CCTTC 5 cut(s) 116, 484, 632, 1185, 2140
HpyCH4III ACNGT 3 cut(s) 1622, 2067, 2254
HpyCH4IV ACGT 8 cut(s) 261, 418, 426, 536, 984, 1569, 1799, 2132
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 987, 1910
HpyF3I CTNAG 4 cut(s) 1070, 1497, 1529, 2029
HpySE526I ACGT 8 cut(s) 261, 418, 426, 536, 984, 1569, 1799, 2132
Hsp92I GRCGYC 1 cut(s) 1799
Hsp92II CATG 8 cut(s) 53, 152, 228, 887, 1307, 1607, 1631, 1783
HspAI GCGC 2 cut(s) 1048, 1449
LguI GCTCTTC 1 cut(s) 1847
LmnI GCTCC 2 cut(s) 714, 1638
Lsp1109I GCAGC 9 cut(s) 177, 297, 474, 831, 1791, 1897, 1947, 2073, 2107
LweI GCATC 6 cut(s) 230, 474, 652, 685, 1591, 1947
MabI ACCWGGT 1 cut(s) 868
MaeI CTAG 5 cut(s) 254, 1145, 1395, 2006, 2361
MaeII ACGT 8 cut(s) 261, 418, 426, 536, 984, 1569, 1799, 2132
MaeIII GTNAC 9 cut(s) 151, 311, 427, 1185, 1540, 1760, 1795, 2067, 2369
MbiI CCGCTC 1 cut(s) 2116
MboII GAAGA 6 cut(s) 119, 384, 1201, 1253, 1864, 2476
MfeI CAATTG 1 cut(s) 1847
MflI RGATCY 6 cut(s) 166, 608, 1081, 1546, 1750, 1948
MhlI GDGCHC 3 cut(s) 205, 1635, 2220
MlyI GAGTC 5 cut(s) 556, 827, 1345, 1490, 2034
MmeI TCCRAC 4 cut(s) 107, 362, 1364, 1670
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 2 cut(s) 1887, 2276
MslI CAYNNNNRTG 2 cut(s) 1302, 1984
MspA1I CMGCKG 2 cut(s) 705, 1026
MspCI CTTAAG 3 cut(s) 1199, 1346, 1712
MspI CCGG 1 cut(s) 1637
MspR9I CCNGG 3 cut(s) 870, 1086, 1637
MunI CAATTG 1 cut(s) 1847
MvaI CCWGG 2 cut(s) 870, 1086
MvnI CGCG 2 cut(s) 1050, 2301
MwoI GCNNNNNNNGC 3 cut(s) 347, 987, 1910
NciI CCSGG 1 cut(s) 1637
NdeI CATATG 3 cut(s) 1180, 1401, 2142
NlaIII CATG 8 cut(s) 53, 152, 228, 887, 1307, 1607, 1631, 1783
NlaIV GGNNCC 3 cut(s) 17, 710, 1634
NmuCI GTSAC 4 cut(s) 151, 311, 1185, 1795
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 2 cut(s) 152, 887
NspV TTCGAA 2 cut(s) 577, 1872
PaeR7I CTCGAG 2 cut(s) 688, 821
PciI ACATGT 2 cut(s) 148, 883
PciSI GCTCTTC 1 cut(s) 1847
PcsI WCGNNNNNNNCGW 1 cut(s) 695
PdmI GAANNNNTTC 2 cut(s) 1887, 2276
PfeI GAWTC 7 cut(s) 579, 632, 1595, 1648, 2157, 2296, 2357
PleI GAGTC 5 cut(s) 556, 827, 1344, 1489, 2033
PpsI GAGTC 5 cut(s) 556, 827, 1344, 1489, 2033
Ppu21I YACGTR 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 1525
PscI ACATGT 2 cut(s) 148, 883
PshAI GACNNNNGTC 1 cut(s) 1509
PshBI ATTAAT 1 cut(s) 1473
Psp124BI GAGCTC 1 cut(s) 2220
Psp5II RGGWCCY 1 cut(s) 1525
Psp6I CCWGG 2 cut(s) 868, 1084
PspGI CCWGG 2 cut(s) 868, 1084
PspN4I GGNNCC 3 cut(s) 17, 710, 1634
PspPI GGNCC 6 cut(s) 15, 103, 859, 1066, 1504, 1525
PspPPI RGGWCCY 1 cut(s) 1525
PstI CTGCAG 1 cut(s) 1915
PstNI CAGNNNCTG 2 cut(s) 1579, 1910
PsuI RGATCY 6 cut(s) 166, 608, 1081, 1546, 1750, 1948
PvuII CAGCTG 1 cut(s) 705
RsaI GTAC 3 cut(s) 233, 995, 2395
RsaNI GTAC 3 cut(s) 232, 994, 2394
RseI CAYNNNNRTG 2 cut(s) 1302, 1984
SacI GAGCTC 1 cut(s) 2220
SalI GTCGAC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 1847
Sau96I GGNCC 6 cut(s) 15, 103, 859, 1066, 1504, 1525
SchI GAGTC 5 cut(s) 556, 827, 1345, 1490, 2034
ScrFI CCNGG 3 cut(s) 870, 1086, 1637
SduI GDGCHC 3 cut(s) 205, 1635, 2220
SexAI ACCWGGT 1 cut(s) 868
SfaNI GCATC 6 cut(s) 230, 474, 652, 685, 1591, 1947
SfcI CTRYAG 2 cut(s) 1621, 1911
Sfr274I CTCGAG 2 cut(s) 688, 821
SfuI TTCGAA 2 cut(s) 577, 1872
SinI GGWCC 5 cut(s) 15, 859, 1066, 1504, 1525
SlaI CTCGAG 2 cut(s) 688, 821
SmiMI CAYNNNNRTG 2 cut(s) 1302, 1984
SmlI CTYRAG 8 cut(s) 170, 688, 821, 1199, 1280, 1346, 1433, 1712
SmoI CTYRAG 8 cut(s) 170, 688, 821, 1199, 1280, 1346, 1433, 1712
SnaBI TACGTA 1 cut(s) 427
SsiI CCGC 8 cut(s) 98, 162, 1024, 1050, 1832, 2114, 2301, 2315
SspI AATATT 3 cut(s) 457, 735, 1932
SspMI CTAG 5 cut(s) 254, 1145, 1395, 2006, 2361
SstI GAGCTC 1 cut(s) 2220
StyD4I CCNGG 3 cut(s) 868, 1084, 1635
StyI CCWWGG 2 cut(s) 1452, 1507
TaaI ACNGT 3 cut(s) 1622, 2067, 2254
TaiI ACGT 8 cut(s) 264, 421, 429, 539, 987, 1572, 1802, 2135
TatI WGTACW 1 cut(s) 2393
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 7 cut(s) 579, 632, 1595, 1648, 2157, 2296, 2357
TscAI CASTG 4 cut(s) 1134, 1451, 1771, 2259
TseFI GTSAC 4 cut(s) 151, 311, 1185, 1795
TseI GCWGC 9 cut(s) 190, 285, 462, 844, 1804, 1910, 1960, 2086, 2120
Tsp45I GTSAC 4 cut(s) 151, 311, 1185, 1795
TspGWI ACGGA 3 cut(s) 866, 917, 1559
TspRI CASTG 4 cut(s) 1134, 1451, 1771, 2259
Vha464I CTTAAG 3 cut(s) 1199, 1346, 1712
VneI GTGCAC 1 cut(s) 201
VpaK11BI GGWCC 5 cut(s) 15, 859, 1066, 1504, 1525
VspI ATTAAT 1 cut(s) 1473
XapI RAATTY 4 cut(s) 572, 964, 1868, 2377
XbaI TCTAGA 2 cut(s) 2005, 2360
XceI RCATGY 2 cut(s) 152, 887
XhoI CTCGAG 2 cut(s) 688, 821
XmiI GTMKAC 5 cut(s) 133, 1090, 1428, 1624, 1721
XmnI GAANNNNTTC 2 cut(s) 1887, 2276
XspI CTAG 5 cut(s) 254, 1145, 1395, 2006, 2361
ZraI GACGTC 1 cut(s) 1800
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.