AT3G59240

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
21898682 .. 21900364
1683 bp
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UTR
Exon/CDS
Intron
AT3G59240.1

Sequence Viewer

Length: 1515 bp
ATGGATGATATATGTTGCAAAGATATAATCAGCGATCTACCAGAAGCTCTTATTTGCCACTTACTGTCCTTCGTTCCCACAAAAGAAGCTGCTTTAACATCACTTCTCTCCGAAAAATGGCGTTATCTCTTTGCTTTTGCACCAATTCTTGATTTCGATGATTCGGTATGGATGCAAAGTCCATTGGTTTACATGAATGAGGTTCATAGAAAGTTCATGGATTTCGTGGATAGAGTATTGGGTTTGCAGGGTAATTCCACTCTAGTTAGGTTCTCACTCAACTGTCGAAATGGTATTGATCGAGAATGCATCTTTAGATGGATATCAAATGTGATAGAACGTGGAGTATCGGATCTTGATTTAGGCGGTAATTTTGTTTCAAATCGTTCTATGCCTTCAAGTGTCTTTGTGAGCAAGTCACTTGTTAAGCTGAGAATACGAACTGAAAATTGTACCATCATTGATTTGGAAGATGTTTTTCTTCCAAAGCTTAAGACTCTCGATCTTAGTAGTATTTGGTTTCGAGACGGTGATACTTGCCTTCTCAAGCTCATTTCTGGATGTCAAGTCCTTGAGGATTTAACTATGAGTGATCTATGGTGGGATGGTTATTGGAACCGCTCTATGTCTTCCAAAACCCTCAAGAGACTAACGGTACATTGTTCAGACTGGGATAGAAGTCCGGGTAGTATTTCATTTGACACGCCAAATCTTGTCTACTTTGAATACTTTGATCTCGTTGCGGACAAGTATGAAGTAGTGAATTTCGACTCACTTGTTGAAGCTAGTATCGGTCTTCGAATGAGACATCATCAGCGTGCACATGCAAGCTATGGAGATTTGGTCGTAAATGCAACCAATCTTTTTATGGGGATAAGCAATGTTCGGATCCTTCAATTGTTTTCTAACGCTCTTGAGGTGCTTACTTTCTGTTGTGCACCAATACCGGTATTCAAAAAGCTGATCCACTTAACTGTTGAGACTGACAAAGATGTAGGATGGGAATCATTGCCGGCTCTACTCAAGAACTGTCCAAATCTAGAAACCCTTGTCTTCAAAGGACTCCATCACAGATCTACAAGTAAATGTCAGGACACTGACGGGTGTCTATGCAAGTCTTCAAAGGACATTCGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAAGTTTGGCGAAGTTGCTTCTTACTTTGGTGACGAGGAAAAGCAGCTGGAGTTAGTCAAGTATTTCCTGGAGACAATGCCGAATCTTGAACAAATGATATTGCACTACAATACACGAATTAGTGAAGGTGTGAAAAGTCAACTTGACTGGCTAGTTCCTAGAGTATCTTCATCCAAGTGTAGTGTCCAACTAATCTGTGATAACGCACCAACTTATCCTTTCTATGGTGGTATCATCTGTGATAACTTCATCACACCAGCACCAACTTATCCTTTCTTTGGTGATCCCCTACATGGGATGGTGATCCCCTACATGGGAGATCAGCCTCATTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

504

Amino Acids

57.37

Weight (kDa)

5.6

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 106 - 224 7.1e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 163 - 188 3.9e-07 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 621
AccI GTMKAC 1 cut(s) 717
AciI CCGC 3 cut(s) 366, 619, 743
AclWI GGATC 6 cut(s) 360, 883, 896, 958, 1454, 1474
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 1 cut(s) 1187
AfaI GTAC 2 cut(s) 454, 657
AfiI CCNNNNNNNGG 7 cut(s) 117, 1400, 1454, 1469, 1470, 1489, 1490
AflII CTTAAG 1 cut(s) 491
AgeI ACCGGT 1 cut(s) 946
AgsI TTSAA 9 cut(s) 381, 399, 725, 782, 896, 955, 1057, 1122, 1265
AjnI CCWGG 1 cut(s) 1242
AluBI AGCT 9 cut(s) 47, 89, 430, 490, 550, 785, 831, 961, 1222
AluI AGCT 9 cut(s) 47, 89, 430, 490, 550, 785, 831, 961, 1222
Alw21I GWGCWC 2 cut(s) 823, 940
Alw26I GTCTC 5 cut(s) 519, 640, 799, 974, 1241
Alw44I GTGCAC 2 cut(s) 819, 936
AlwI GGATC 6 cut(s) 360, 883, 896, 958, 1454, 1474
ApaLI GTGCAC 2 cut(s) 819, 936
ApeKI GCWGC 2 cut(s) 89, 1219
ApoI RAATTY 1 cut(s) 763
AsiGI ACCGGT 1 cut(s) 946
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 5 cut(s) 542, 1168, 1217, 1469, 1489
AsuII TTCGAA 1 cut(s) 799
BaeGI GKGCMC 2 cut(s) 823, 940
BaeI ACNNNNGTAYC 2 cut(s) 1163, 1196
BamHI GGATCC 1 cut(s) 888
BbsI GAAGAC 4 cut(s) 621, 788, 1045, 1110
Bbv12I GWGCWC 2 cut(s) 823, 940
BbvI GCAGC 2 cut(s) 76, 1231
BccI CCATC 6 cut(s) 312, 464, 599, 993, 1074, 1468
BciT130I CCWGG 1 cut(s) 1244
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 5 cut(s) 519, 640, 799, 974, 1241
BfaI CTAG 5 cut(s) 263, 786, 1040, 1328, 1335
BfrI CTTAAG 1 cut(s) 491
BglII AGATCT 1 cut(s) 1073
BisI GCNGC 2 cut(s) 90, 1220
BlsI GCNGC 2 cut(s) 91, 1221
Bme1390I CCNGG 2 cut(s) 684, 1244
BmiI GGNNCC 2 cut(s) 617, 890
BmrFI CCNGG 2 cut(s) 684, 1244
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 2 cut(s) 162, 318
BmuI ACTGGG 1 cut(s) 679
BoxI GACNNNNGTC 1 cut(s) 1104
BpiI GAAGAC 4 cut(s) 621, 788, 1045, 1110
BpmI CTGGAG 2 cut(s) 1244, 1265
Bpu14I TTCGAA 1 cut(s) 799
BpuEI CTTGAG 6 cut(s) 530, 593, 626, 935, 1007, 1160
BpuMI CCSGG 1 cut(s) 684
BsaBI GATNNNNATC 3 cut(s) 322, 1003, 1478
BsaWI WCCGGW 2 cut(s) 946, 1153
BsaXI ACNNNNNCTCC 2 cut(s) 828, 858
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 1400, 1454, 1469, 1470, 1489, 1490
Bse118I RCCGGY 2 cut(s) 946, 1012
Bse1I ACTGG 2 cut(s) 674, 1328
Bse3DI GCAATG 2 cut(s) 886, 1007
Bse8I GATNNNNATC 3 cut(s) 322, 1003, 1478
BseBI CCWGG 1 cut(s) 1244
BseGI GGATG 7 cut(s) 10, 177, 566, 610, 1004, 1346, 1479
BseJI GATNNNNATC 3 cut(s) 322, 1003, 1478
BseLI CCNNNNNNNGG 7 cut(s) 117, 1400, 1454, 1469, 1470, 1489, 1490
BseMI GCAATG 2 cut(s) 886, 1007
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 674, 1328
BseSI GKGCMC 2 cut(s) 823, 940
BseXI GCAGC 2 cut(s) 76, 1231
BshTI ACCGGT 1 cut(s) 946
BsiHKAI GWGCWC 2 cut(s) 823, 940
BsiSI CCGG 4 cut(s) 683, 947, 1013, 1154
BslI CCNNNNNNNGG 7 cut(s) 117, 1400, 1454, 1469, 1470, 1489, 1490
BsmAI GTCTC 5 cut(s) 519, 640, 799, 974, 1241
BsmBI CGTCTC 1 cut(s) 519
BsmI GAATGC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 799
Bsp1286I GDGCHC 2 cut(s) 823, 940
BspACI CCGC 3 cut(s) 366, 619, 743
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 617, 890
BspPI GGATC 6 cut(s) 360, 883, 896, 958, 1454, 1474
BspT104I TTCGAA 1 cut(s) 799
BspTI CTTAAG 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 886, 1007
BsrFI RCCGGY 2 cut(s) 946, 1012
BsrI ACTGG 2 cut(s) 674, 1328
BssAI RCCGGY 2 cut(s) 946, 1012
Bst2UI CCWGG 1 cut(s) 1244
Bst4CI ACNGT 6 cut(s) 66, 284, 530, 655, 976, 1031
BstAFI CTTAAG 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 799
BstC8I GCNNGC 3 cut(s) 819, 829, 1014
BstDEI CTNAG 2 cut(s) 431, 506
BstF5I GGATG 7 cut(s) 10, 177, 566, 610, 1004, 1346, 1479
BstMAI GTCTC 5 cut(s) 519, 640, 799, 974, 1241
BstNI CCWGG 1 cut(s) 1244
BstNSI RCATGY 1 cut(s) 827
BstPAI GACNNNNGTC 1 cut(s) 1104
BstSCI CCNGG 2 cut(s) 682, 1242
BstSLI GKGCMC 2 cut(s) 823, 940
BstV1I GCAGC 2 cut(s) 76, 1231
BstV2I GAAGAC 4 cut(s) 621, 788, 1045, 1110
BstX2I RGATCY 3 cut(s) 352, 888, 1073
BstYI RGATCY 3 cut(s) 352, 888, 1073
BtsCI GGATG 7 cut(s) 10, 177, 566, 610, 1004, 1346, 1479
BtsIMutI CAGTG 1 cut(s) 1095
Cac8I GCNNGC 3 cut(s) 819, 829, 1014
Cfr10I RCCGGY 2 cut(s) 946, 1012
Csp6I GTAC 2 cut(s) 453, 656
CspAI ACCGGT 1 cut(s) 946
CviAII CATG 5 cut(s) 193, 217, 824, 1469, 1489
CviQI GTAC 2 cut(s) 453, 656
DdeI CTNAG 2 cut(s) 431, 506
Eco32I GATATC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 1187
EcoRII CCWGG 1 cut(s) 1242
EcoRV GATATC 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 519
FaeI CATG 5 cut(s) 196, 220, 827, 1472, 1492
FatI CATG 5 cut(s) 192, 216, 823, 1468, 1488
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 2 cut(s) 90, 1220
FokI GGATG 7 cut(s) 17, 184, 573, 617, 1011, 1333, 1486
Fsp4HI GCNGC 2 cut(s) 90, 1220
FspBI CTAG 5 cut(s) 263, 786, 1040, 1328, 1335
GluI GCNGC 2 cut(s) 90, 1220
GsuI CTGGAG 2 cut(s) 1244, 1265
HapII CCGG 4 cut(s) 683, 947, 1013, 1154
Hin1II CATG 5 cut(s) 196, 220, 827, 1472, 1492
HincII GTYRAC 1 cut(s) 1316
HindII GTYRAC 1 cut(s) 1316
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 6 cut(s) 161, 496, 770, 1004, 1062, 1258
HpaII CCGG 4 cut(s) 683, 947, 1013, 1154
HphI GGTGA 5 cut(s) 542, 1168, 1217, 1469, 1489
Hpy166II GTNNAC 5 cut(s) 190, 718, 821, 938, 1316
Hpy188I TCNGA 5 cut(s) 112, 352, 667, 888, 1167
Hpy8I GTNNAC 5 cut(s) 190, 718, 821, 938, 1316
HpyAV CCTTC 6 cut(s) 79, 405, 551, 902, 1153, 1295
HpyCH4III ACNGT 6 cut(s) 66, 284, 530, 655, 976, 1031
HpyCH4IV ACGT 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 431, 506
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 5 cut(s) 196, 220, 827, 1472, 1492
KroI GCCGGC 1 cut(s) 1012
KroNI GCCGGC 1 cut(s) 1014
Lsp1109I GCAGC 2 cut(s) 76, 1231
LweI GCATC 2 cut(s) 162, 318
MaeI CTAG 5 cut(s) 263, 786, 1040, 1328, 1335
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 417, 1205
MbiI CCGCTC 1 cut(s) 621
MboII GAAGA 8 cut(s) 473, 482, 621, 788, 1045, 1110, 1180, 1335
MfeI CAATTG 1 cut(s) 896
MflI RGATCY 3 cut(s) 352, 888, 1073
MhlI GDGCHC 2 cut(s) 823, 940
MluCI AATT 7 cut(s) 144, 253, 370, 448, 763, 896, 1293
MlyI GAGTC 3 cut(s) 490, 764, 1056
MmeI TCCRAC 1 cut(s) 1387
MnlI CCTC 6 cut(s) 193, 568, 650, 910, 1204, 1512
Mph1103I ATGCAT 1 cut(s) 311
MroNI GCCGGC 1 cut(s) 1012
MseI TTAA 5 cut(s) 95, 426, 492, 581, 971
MslI CAYNNNNRTG 2 cut(s) 816, 1351
MspA1I CMGCKG 1 cut(s) 1222
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 4 cut(s) 683, 947, 1013, 1154
MspR9I CCNGG 2 cut(s) 684, 1244
MunI CAATTG 1 cut(s) 896
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 1244
NaeI GCCGGC 1 cut(s) 1014
NciI CCSGG 1 cut(s) 684
NgoMIV GCCGGC 1 cut(s) 1012
NlaIII CATG 5 cut(s) 196, 220, 827, 1472, 1492
NlaIV GGNNCC 2 cut(s) 617, 890
NmuCI GTSAC 2 cut(s) 417, 1205
NsiI ATGCAT 1 cut(s) 311
NspI RCATGY 1 cut(s) 827
NspV TTCGAA 1 cut(s) 799
PctI GAATGC 1 cut(s) 311
PdiI GCCGGC 1 cut(s) 1014
PfeI GAWTC 3 cut(s) 161, 1004, 1258
PfoI TCCNGGA 1 cut(s) 1242
PinAI ACCGGT 1 cut(s) 946
PkrI GCNGC 2 cut(s) 91, 1221
PleI GAGTC 3 cut(s) 490, 764, 1056
PpsI GAGTC 3 cut(s) 490, 764, 1056
PshAI GACNNNNGTC 1 cut(s) 1104
Psp6I CCWGG 1 cut(s) 1242
PspGI CCWGG 1 cut(s) 1242
PspN4I GGNNCC 2 cut(s) 617, 890
PsuI RGATCY 3 cut(s) 352, 888, 1073
PvuII CAGCTG 1 cut(s) 1222
RsaI GTAC 2 cut(s) 454, 657
RsaNI GTAC 2 cut(s) 453, 656
RseI CAYNNNNRTG 2 cut(s) 816, 1351
SaqAI TTAA 5 cut(s) 95, 426, 492, 581, 971
SatI GCNGC 2 cut(s) 90, 1220
SchI GAGTC 3 cut(s) 490, 764, 1056
ScrFI CCNGG 2 cut(s) 684, 1244
SduI GDGCHC 2 cut(s) 823, 940
SfaNI GCATC 2 cut(s) 162, 318
SfuI TTCGAA 1 cut(s) 799
SmiMI CAYNNNNRTG 2 cut(s) 816, 1351
SmlI CTYRAG 7 cut(s) 491, 545, 572, 641, 914, 1022, 1175
SmoI CTYRAG 7 cut(s) 491, 545, 572, 641, 914, 1022, 1175
Sse9I AATT 7 cut(s) 144, 253, 370, 448, 763, 896, 1293
SsiI CCGC 3 cut(s) 366, 619, 743
SspMI CTAG 5 cut(s) 263, 786, 1040, 1328, 1335
StyD4I CCNGG 2 cut(s) 682, 1242
TaaI ACNGT 6 cut(s) 66, 284, 530, 655, 976, 1031
TaiI ACGT 1 cut(s) 343
TaqI TCGA 7 cut(s) 156, 286, 301, 501, 523, 768, 799
TaqII GACCGA 1 cut(s) 782
TasI AATT 7 cut(s) 144, 253, 370, 448, 763, 896, 1293
TfiI GAWTC 3 cut(s) 161, 1004, 1258
Tru1I TTAA 5 cut(s) 95, 426, 492, 581, 971
Tru9I TTAA 5 cut(s) 95, 426, 492, 581, 971
TscAI CASTG 1 cut(s) 1102
TseFI GTSAC 2 cut(s) 417, 1205
TseI GCWGC 2 cut(s) 89, 1219
Tsp45I GTSAC 2 cut(s) 417, 1205
TspDTI ATGAA 7 cut(s) 194, 205, 209, 684, 768, 1335, 1414
TspRI CASTG 1 cut(s) 1102
Vha464I CTTAAG 1 cut(s) 491
VneI GTGCAC 2 cut(s) 819, 936
XapI RAATTY 1 cut(s) 763
XbaI TCTAGA 1 cut(s) 1039
XceI RCATGY 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 2 cut(s) 463, 865
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 5 cut(s) 263, 786, 1040, 1328, 1335
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.