AT3G44180

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
15900795 .. 15901716
922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44180.1

Sequence Viewer

Length: 609 bp
ATGACGTTCACCGTTGGATATGTAACGCATTGGAACATGGTGTCTCCGAGCTTCATGTACGTCATATCCAACAAAACCATTAAGAAACTCTCGGTTACCTGTTTGAACTGTCGTTATTATGGTACTGTTCCTAGAAATATTTCATTTGACACACCGAATGTTGTTGATTTCAACTACTCTGATTATCTTCGTCGTGAATCTCCACAATGTCACTTGGATTCACTTGCCAAAGCTACATTGGACCTTCATTTCTTCGAAGATGACAAGAGAGCAGATGTGACAGATCTCATCAGTGGGCTACATAATGTCAAGACCCTTCACTTAACTTCTTCTACTGTCGAGGTTATTTCGGTATGCTGCAAAGGTGGACTACCAGTGTTCAACAACCTCGTTGATTTAGTATTTTCTAGTAAAAAAGAAGGTTGGAAAGTGCTTCTGCCACTTCTGATAGAGCGTTCTCCAAACCTCAAAAATCTAGTTCTCTCGTGTCTTGAAGTGGTGAAAGTTTATGTTGCAGCTGAAATGGATGACACCAAAAAGATGCAACTCACAGAGGATCTGTTGAAGTTTCCTGCAGCTTCATCTAAGCTCAAGATACAAGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

202

Amino Acids

22.85

Weight (kDa)

8.16

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 564
AfaI GTAC 2 cut(s) 59, 124
AgsI TTSAA 5 cut(s) 106, 172, 382, 494, 565
AluBI AGCT 5 cut(s) 51, 233, 518, 578, 589
AluI AGCT 5 cut(s) 51, 233, 518, 578, 589
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 564
ApeKI GCWGC 3 cut(s) 357, 515, 575
Asp700I GAANNNNTTC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 511
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 241
BauI CACGAG 1 cut(s) 484
BbvI GCAGC 3 cut(s) 344, 527, 587
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 3 cut(s) 132, 408, 476
BfmI CTRYAG 1 cut(s) 573
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 358, 516, 576
BlsI GCNGC 3 cut(s) 359, 517, 577
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 532
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 344, 527, 587
BsmAI GTCTC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 255
Bsp143I GATC 2 cut(s) 283, 556
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 374
BssMI GATC 2 cut(s) 283, 556
BssSI CACGAG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 484
Bst4CI ACNGT 4 cut(s) 13, 110, 127, 337
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 585
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 2 cut(s) 286, 559
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 2 cut(s) 283, 556
BstPI GGTNACC 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 344, 527, 587
BstX2I RGATCY 2 cut(s) 283, 556
BstYI RGATCY 2 cut(s) 283, 556
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 298, 381
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 58, 123
CviAII CATG 3 cut(s) 37, 55, 604
CviJI RGCY 6 cut(s) 51, 233, 298, 518, 578, 589
CviKI_1 RGCY 6 cut(s) 51, 233, 298, 518, 578, 589
CviQI GTAC 2 cut(s) 58, 123
DdeI CTNAG 1 cut(s) 585
DpnI GATC 2 cut(s) 285, 558
DpnII GATC 2 cut(s) 283, 556
Eco47I GGWCC 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
FaeI CATG 3 cut(s) 40, 58, 607
FaiI YATR 9 cut(s) 21, 38, 56, 65, 120, 303, 355, 510, 605
FatI CATG 3 cut(s) 36, 54, 603
Fnu4HI GCNGC 3 cut(s) 358, 516, 576
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 3 cut(s) 358, 516, 576
FspBI CTAG 3 cut(s) 132, 408, 476
GluI GCNGC 3 cut(s) 358, 516, 576
Hin1II CATG 3 cut(s) 40, 58, 607
HinfI GANTC 2 cut(s) 197, 218
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 2 cut(s) 9, 368
Hpy188I TCNGA 3 cut(s) 48, 181, 447
Hpy188III TCNNGA 4 cut(s) 194, 310, 491, 592
Hpy8I GTNNAC 2 cut(s) 9, 368
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 254, 326, 413
HpyCH4III ACNGT 4 cut(s) 13, 110, 127, 337
HpyCH4IV ACGT 2 cut(s) 5, 60
HpyCH4V TGCA 4 cut(s) 360, 515, 544, 575
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 2 cut(s) 5, 60
Hsp92II CATG 3 cut(s) 40, 58, 607
Kzo9I GATC 2 cut(s) 283, 556
LpnPI CCDG 3 cut(s) 112, 387, 585
Lsp1109I GCAGC 3 cut(s) 344, 527, 587
LweI GCATC 1 cut(s) 531
MaeI CTAG 3 cut(s) 132, 408, 476
MaeII ACGT 2 cut(s) 5, 60
MaeIII GTNAC 4 cut(s) 22, 94, 209, 277
MalI GATC 2 cut(s) 285, 558
MboI GATC 2 cut(s) 283, 556
MboII GAAGA 4 cut(s) 179, 244, 269, 321
MflI RGATCY 2 cut(s) 283, 556
MmeI TCCRAC 2 cut(s) 93, 404
MnlI CCTC 4 cut(s) 334, 398, 476, 547
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 2 cut(s) 81, 323
MspA1I CMGCKG 1 cut(s) 518
NdeII GATC 2 cut(s) 283, 556
NlaIII CATG 3 cut(s) 40, 58, 607
NmuCI GTSAC 2 cut(s) 209, 277
NspV TTCGAA 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 197, 218
PkrI GCNGC 3 cut(s) 359, 517, 577
PspEI GGTNACC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 241
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 283, 556
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 2 cut(s) 59, 124
RsaNI GTAC 2 cut(s) 58, 123
SaqAI TTAA 2 cut(s) 81, 323
SatI GCNGC 3 cut(s) 358, 516, 576
Sau3AI GATC 2 cut(s) 283, 556
Sau96I GGNCC 1 cut(s) 241
SfaNI GCATC 1 cut(s) 531
SfcI CTRYAG 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
SspI AATATT 1 cut(s) 139
SspMI CTAG 3 cut(s) 132, 408, 476
TaaI ACNGT 4 cut(s) 13, 110, 127, 337
TaiI ACGT 2 cut(s) 8, 63
TaqI TCGA 2 cut(s) 255, 339
TfiI GAWTC 2 cut(s) 197, 218
Tru1I TTAA 2 cut(s) 81, 323
Tru9I TTAA 2 cut(s) 81, 323
TscAI CASTG 2 cut(s) 298, 381
TseFI GTSAC 2 cut(s) 209, 277
TseI GCWGC 3 cut(s) 357, 515, 575
Tsp45I GTSAC 2 cut(s) 209, 277
TspDTI ATGAA 4 cut(s) 43, 132, 236, 570
TspRI CASTG 2 cut(s) 298, 381
VpaK11BI GGWCC 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 3 cut(s) 132, 408, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.