AT3G59270
ERF Family

BEST Arabidopsis thaliana protein match is F-box RNI-like superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
21906545 .. 21907872
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59270.1

Sequence Viewer

Length: 1008 bp
ATGAATCTCGATTTTGATGACTCTAAGCGTATGCATTATGGAGTGACAAAACAAGAAAGGGTTAAGATGCTCCAACGTTTCATAAAGCGTGTGGATGGTAAATTGGCTTTGTGTAAGAATGTTCCTTTGAACAGATTCTCCATCAAGTGTAAAGATGACGTTGGACCTGCTCCTGTCATTGGTTGGATAACCAATGTGTTGAAACGTCGTGTATCAGAACTTGCACTAGACATCTCTTCATGTTGGGATTGGCCTATGTCTACAGCGATTGATGGGTGCAATACTATGGTTCAGGAATTTTGGGAGTCTTGTTCTGTATCTAGCACAAGCCTCAAGAGACTAACGTATCTTAAAGCGAATTTTGATTCGCTTGTTGAAGCTCGTCTTGATCTTCAAATGACACATGATCAGATCCATAAGGCCAAATTTTCAGCGGATGATCCAATCCAGCATGAGGGGTTGGTTGGTAATGCAACTGTTTTTTTCATTGGAATTTGTAATGTTAGGTCCCTTTACTTATCTTACAACACTCTTGAGCCACTGCCGGTTTTCAACAACCTGATTCAGCTAACCGTTAAGACTGATCGTCTTGTGGGATGGGAATCATTGACGGCTCTACTCAAGAACAGTCCAAACCTAGAAACCCTTGTCTTTGAAGGACTTCTCCACAGATATGATATGAAATGTCAAAGCAGTGACGAGTGCCTGTGCAAACCTTGGGAGGAGGAGAACATTCCCACTTGTCTATCATTAAGTCCTGTGAAGGTCTTAAAGATAATGAAGTTTGGAGATATCGATGAAGATGAGGACATGGACAAAATGATGGATCAAGTCGAGTACTTCCTTGAGACAATGCCTAATCTTGAACAACTCATAATTCACTACGAAACATCAATTGACGAAGATGTGGAGGAAGTATTAAGCCAATTTCAGATGGTTCCTAGAGAAGGTTTAACCGAGTGCAGAATTCAAGTAATCTCTGACAATCTTGTCTTGTCCTCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

335

Amino Acids

38.45

Weight (kDa)

4.87

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 989
Acc36I ACCTGC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 260
AciI CCGC 1 cut(s) 434
AclI AACGTT 1 cut(s) 76
AclWI GGATC 3 cut(s) 406, 434, 834
AcsI RAATTY 5 cut(s) 296, 358, 425, 492, 966
AfaI GTAC 1 cut(s) 839
AfiI CCNNNNNNNGG 3 cut(s) 179, 454, 947
AgsI TTSAA 8 cut(s) 130, 202, 377, 395, 553, 656, 866, 971
AhdI GACNNNNNGTC 1 cut(s) 585
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 380, 568
AluI AGCT 2 cut(s) 380, 568
Alw26I GTCTC 2 cut(s) 331, 842
AlwI GGATC 3 cut(s) 406, 434, 834
AoxI GGCC 2 cut(s) 251, 420
ApoI RAATTY 5 cut(s) 296, 358, 425, 492, 966
Asp700I GAANNNNTTC 2 cut(s) 134, 660
AspS9I GGNCC 2 cut(s) 164, 507
AvaII GGWCC 2 cut(s) 164, 507
BaeI ACNNNNGTAYC 2 cut(s) 329, 362
BccI CCATC 6 cut(s) 89, 149, 266, 591, 817, 928
BceAI ACGGC 1 cut(s) 627
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 331, 842
BfaI CTAG 4 cut(s) 227, 321, 638, 942
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 839
Bme18I GGWCC 2 cut(s) 164, 507
BmeRI GACNNNNNGTC 1 cut(s) 585
BmgT120I GGNCC 2 cut(s) 164, 507
BmiI GGNNCC 2 cut(s) 509, 939
BmsI GCATC 1 cut(s) 57
BpuEI CTTGAG 4 cut(s) 317, 554, 605, 866
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 716
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 454, 947
Bse118I RCCGGY 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 601
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 3 cut(s) 100, 442, 602
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 3 cut(s) 179, 454, 947
BseRI GAGGAG 2 cut(s) 737, 740
BsgI GTGCAG 1 cut(s) 982
BshFI GGCC 2 cut(s) 253, 422
BshVI ATCGAT 1 cut(s) 795
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 3 cut(s) 179, 454, 947
BsmAI GTCTC 2 cut(s) 331, 842
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 2 cut(s) 253, 422
Bsp143I GATC 6 cut(s) 388, 406, 411, 439, 583, 826
BspACI CCGC 1 cut(s) 434
BspANI GGCC 2 cut(s) 253, 422
BspDI ATCGAT 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 509, 939
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 406, 434, 834
BsrFI RCCGGY 1 cut(s) 544
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 6 cut(s) 388, 406, 411, 439, 583, 826
BssT1I CCWWGG 1 cut(s) 716
Bst4CI ACNGT 3 cut(s) 478, 574, 629
Bst6I CTCTTC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 945
BstF5I GGATG 3 cut(s) 100, 442, 602
BstKTI GATC 6 cut(s) 391, 409, 414, 442, 586, 829
BstMAI GTCTC 2 cut(s) 331, 842
BstMBI GATC 6 cut(s) 388, 406, 411, 439, 583, 826
BstSFI CTRYAG 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 2 cut(s) 253, 422
BsuTUI ATCGAT 1 cut(s) 795
BtsCI GGATG 3 cut(s) 100, 442, 602
BtsI GCAGTG 2 cut(s) 539, 700
BtsIMutI CAGTG 2 cut(s) 539, 700
BveI ACCTGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 164, 507
ClaI ATCGAT 1 cut(s) 795
Csp6I GTAC 1 cut(s) 838
CviAII CATG 4 cut(s) 240, 404, 452, 811
CviJI RGCY 9 cut(s) 107, 253, 330, 380, 422, 538, 568, 614, 924
CviKI_1 RGCY 9 cut(s) 107, 253, 330, 380, 422, 538, 568, 614, 924
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 1 cut(s) 24
DpnI GATC 6 cut(s) 390, 408, 413, 441, 585, 828
DpnII GATC 6 cut(s) 388, 406, 411, 439, 583, 826
DrdI GACNNNNNNGTC 1 cut(s) 989
DriI GACNNNNNGTC 1 cut(s) 585
DseDI GACNNNNNNGTC 1 cut(s) 989
Eam1104I CTCTTC 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 716
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 164, 507
EcoNI CCTNNNNNAGG 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 966
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 716
EcoT22I ATGCAT 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 4 cut(s) 243, 407, 455, 814
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 493
FatI CATG 4 cut(s) 239, 403, 451, 810
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 260
FokI GGATG 3 cut(s) 107, 449, 609
FspBI CTAG 4 cut(s) 227, 321, 638, 942
HaeIII GGCC 2 cut(s) 253, 422
HapII CCGG 1 cut(s) 545
Hin1II CATG 4 cut(s) 243, 407, 455, 814
HinfI GANTC 7 cut(s) 4, 20, 135, 305, 365, 562, 602
HpaII CCGG 1 cut(s) 545
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 4 cut(s) 217, 411, 933, 982
Hpy188III TCNNGA 7 cut(s) 8, 293, 334, 386, 533, 622, 863
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 3 cut(s) 650, 757, 941
HpyCH4III ACNGT 3 cut(s) 478, 574, 629
HpyCH4IV ACGT 4 cut(s) 76, 159, 205, 344
HpyCH4V TGCA 6 cut(s) 34, 224, 279, 473, 711, 963
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 4 cut(s) 76, 159, 205, 344
Hsp92II CATG 4 cut(s) 243, 407, 455, 814
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 6 cut(s) 388, 406, 411, 439, 583, 826
LmnI GCTCC 2 cut(s) 75, 175
LpnPI CCDG 8 cut(s) 180, 186, 278, 461, 558, 572, 719, 771
LweI GCATC 1 cut(s) 57
MaeI CTAG 4 cut(s) 227, 321, 638, 942
MaeII ACGT 4 cut(s) 76, 159, 205, 344
MaeIII GTNAC 2 cut(s) 43, 695
MalI GATC 6 cut(s) 390, 408, 413, 441, 585, 828
MboI GATC 6 cut(s) 388, 406, 411, 439, 583, 826
MboII GAAGA 4 cut(s) 228, 383, 812, 914
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 1 cut(s) 411
MluCI AATT 9 cut(s) 101, 296, 358, 425, 492, 876, 894, 926, 966
MlyI GAGTC 2 cut(s) 14, 314
MmeI TCCRAC 3 cut(s) 97, 142, 164
MnlI CCTC 6 cut(s) 341, 448, 715, 718, 799, 904
Mph1103I ATGCAT 1 cut(s) 36
MroXI GAANNNNTTC 2 cut(s) 134, 660
MseI TTAA 8 cut(s) 63, 351, 576, 752, 770, 920, 953, 1006
MslI CAYNNNNRTG 1 cut(s) 672
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 545
MunI CAATTG 1 cut(s) 894
NdeII GATC 6 cut(s) 388, 406, 411, 439, 583, 826
NlaIII CATG 4 cut(s) 243, 407, 455, 814
NlaIV GGNNCC 2 cut(s) 509, 939
NmuCI GTSAC 2 cut(s) 43, 695
NsiI ATGCAT 1 cut(s) 36
PdmI GAANNNNTTC 2 cut(s) 134, 660
PfeI GAWTC 5 cut(s) 4, 135, 365, 562, 602
PleI GAGTC 2 cut(s) 14, 313
PpsI GAGTC 2 cut(s) 14, 313
PpuMI RGGWCCY 1 cut(s) 507
Psp1406I AACGTT 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 509, 939
PspPI GGNCC 2 cut(s) 164, 507
PspPPI RGGWCCY 1 cut(s) 507
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
RseI CAYNNNNRTG 1 cut(s) 672
SaqAI TTAA 8 cut(s) 63, 351, 576, 752, 770, 920, 953, 1006
Sau3AI GATC 6 cut(s) 388, 406, 411, 439, 583, 826
Sau96I GGNCC 2 cut(s) 164, 507
ScaI AGTACT 1 cut(s) 839
SchI GAGTC 2 cut(s) 14, 314
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 164, 507
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 4 cut(s) 332, 533, 620, 845
SmoI CTYRAG 4 cut(s) 332, 533, 620, 845
Sse9I AATT 9 cut(s) 101, 296, 358, 425, 492, 876, 894, 926, 966
SsiI CCGC 1 cut(s) 434
SspMI CTAG 4 cut(s) 227, 321, 638, 942
StyI CCWWGG 1 cut(s) 716
TaaI ACNGT 3 cut(s) 478, 574, 629
TaiI ACGT 4 cut(s) 79, 162, 208, 347
TaqI TCGA 3 cut(s) 9, 795, 834
TasI AATT 9 cut(s) 101, 296, 358, 425, 492, 876, 894, 926, 966
TatI WGTACW 1 cut(s) 837
TfiI GAWTC 5 cut(s) 4, 135, 365, 562, 602
Tru1I TTAA 8 cut(s) 63, 351, 576, 752, 770, 920, 953, 1006
Tru9I TTAA 8 cut(s) 63, 351, 576, 752, 770, 920, 953, 1006
TscAI CASTG 2 cut(s) 546, 700
TseFI GTSAC 2 cut(s) 43, 695
Tsp45I GTSAC 2 cut(s) 43, 695
TspDTI ATGAA 7 cut(s) 17, 70, 228, 475, 695, 794, 813
TspRI CASTG 2 cut(s) 546, 700
VpaK11BI GGWCC 2 cut(s) 164, 507
XagI CCTNNNNNAGG 1 cut(s) 945
XapI RAATTY 5 cut(s) 296, 358, 425, 492, 966
XmiI GTMKAC 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 134, 660
XspI CTAG 4 cut(s) 227, 321, 638, 942
ZrmI AGTACT 1 cut(s) 839
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.