AT3G44090

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
15839123 .. 15840759
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44090.1

Sequence Viewer

Length: 1350 bp
ATGAACAACTCAAAATCGAATCTTCTTGATACGGAACATGGAGATAAAGTTGCTGAACAAATGAATCTAGCTTCGATGGATTGTCTTCCAGATGATCTCCTTGTCCAAATCTTATACTTCCTTCCCACGAAAGAAGCTATATCAACCTCTCTTCTCTCAAAGAGGTGGAGGACTCTGTATTCTCTCGTGCATAATCTTGACTTGGACGATTACATCTTTTGGCACCATGAAGACGGTTACAATCAGTACTTTAGTAACGACATTCAAAAAAGTTTTGAGGAGTTCATGGAGAGGACATTGGCGCTCCTAGGTGGTGGCCATATAAAAACGTTCTCACTAATAAGTGATGAAATATATAGATTTGACCATGTAGTGGATTCTATTAGACCCTGGCTATATTATAACCTACAAAAAGATTCTTTGTGGCAGTTTGGATTCCCATACAAAGTCTTCACCAGCACCAAACTGGTTAAGCTGTCATTGGGAACACGACTAGCCTGCCCAAGAATTCCTCAAGATACATCTCTCCCGGTCCTAAAAGTCCTCCTACTTGAATATATATGGTTTGAGGATAATCAATTATCTGATGTGTTTCTCGCAGCTTGCCCTGCACTTGAGGACTTAACCATACATCACATGTTTCGCCCATTCCTCATATCTAGCAAAAACCTTAAGAAACTCTCAGTTACCATTAATTTTAGCTATTATGTTGATCGTTCTACAATTCTTACACTTGACACGCCGAATGTTGTCGACCTCTACTACTCTGATTTTCCTCGGCCTATAGCTCCACATTGTCATTTAGATTCTCTAGCCAAAGTTGAACTGGACCTTCATTCCTTAGAAGATGATAGTCGCCAGGTACAAAATGACGCGGATGTAAAAAATCTCATTAGTGAGATACGCAATGTTAAGACCCTTCACTTAACTTATTCTGCTGTTGAGTTGATGCTTTCAAGTAAAAAACGAGACTGGAAAGTGCTTCCACTTCTACTAGAGCGTTCTCCAAACCTAAAAACTCTGGTTCTATCAGGTCTGAATCGTTACACATTTGGACGAAGACATCGATTTGTGGGGATTCAAATTCCCTCCAGTAACAAAATAAAGATGTTGAGTATCAAGCAGTATCAAGGAAGTGCAACCGAGCTGAAACACATAAGCCATTTGTTACTGAAAATGGAGTGTCTTGAATTGGTGAAAGTTTATCTTGCAACTGAAATGGATGACCTTAAAAAGATGCAACTCACTGAGGATGTGGTGAAGCTTCCCGCAGCTTCATCTAAGATCGTAGAAAAGTTGAAAGCATTTGGTGCAAAAGCTGTTTTGGAGAGAGTGAGTTTCTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

51.86

Weight (kDa)

6.58

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 59 4.5e-08 F-box domain
LRR_At5g56370 PF24758 145 - 342 2.8e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 753
AccII CGCG 1 cut(s) 875
AciI CCGC 2 cut(s) 875, 1269
AclI AACGTT 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 2 cut(s) 507, 1083
AfaI GTAC 2 cut(s) 248, 864
AfiI CCNNNNNNNGG 1 cut(s) 373
AflII CTTAAG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 7 cut(s) 266, 554, 824, 957, 1082, 1190, 1300
AjnI CCWGG 2 cut(s) 389, 858
Alw26I GTCTC 1 cut(s) 963
AoxI GGCC 2 cut(s) 316, 779
ApeKI GCWGC 2 cut(s) 599, 1271
ApoI RAATTY 2 cut(s) 507, 1083
AseI ATTAAT 1 cut(s) 693
AspA2I CCTAGG 1 cut(s) 307
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 532, 829
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 3 cut(s) 445, 1207, 1270
AvaII GGWCC 2 cut(s) 532, 829
AvrII CCTAGG 1 cut(s) 307
BalI TGGCCA 1 cut(s) 318
BanI GGYRCC 1 cut(s) 222
BauI CACGAG 1 cut(s) 185
BbsI GAAGAC 4 cut(s) 77, 237, 442, 1066
BbvI GCAGC 2 cut(s) 611, 1283
BccI CCATC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BciT130I CCWGG 2 cut(s) 391, 860
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 963
BfaI CTAG 6 cut(s) 68, 308, 494, 660, 812, 995
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 671
BisI GCNGC 2 cut(s) 600, 1272
BlnI CCTAGG 1 cut(s) 307
BlsI GCNGC 2 cut(s) 601, 1273
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 3 cut(s) 391, 530, 860
Bme18I GGWCC 2 cut(s) 532, 829
BmgT120I GGNCC 2 cut(s) 532, 829
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 3 cut(s) 391, 530, 860
BmsI GCATC 2 cut(s) 939, 1227
BpiI GAAGAC 4 cut(s) 77, 237, 442, 1066
BpmI CTGGAG 1 cut(s) 1075
BpuEI CTTGAG 2 cut(s) 498, 635
BpuMI CCSGG 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 1066
BsaJI CCNNGG 3 cut(s) 307, 389, 776
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 4 cut(s) 471, 831, 977, 1092
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 2 cut(s) 391, 860
BseCI ATCGAT 1 cut(s) 1066
BseDI CCNNGG 3 cut(s) 307, 389, 776
BseGI GGATG 3 cut(s) 883, 1228, 1258
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 2 cut(s) 696, 1239
BseNI ACTGG 4 cut(s) 471, 831, 977, 1092
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 611, 1283
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 1 cut(s) 875
BshFI GGCC 2 cut(s) 318, 781
BshNI GGYRCC 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 1066
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 963
BsnI GGCC 2 cut(s) 318, 781
Bsp143I GATC 3 cut(s) 94, 712, 1284
BspACI CCGC 2 cut(s) 875, 1269
BspANI GGCC 2 cut(s) 318, 781
BspCNI CTCAG 2 cut(s) 695, 1240
BspDI ATCGAT 1 cut(s) 1066
BspFNI CGCG 1 cut(s) 875
BspLI GGNNCC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 913
BsrI ACTGG 4 cut(s) 471, 831, 977, 1092
BssECI CCNNGG 3 cut(s) 307, 389, 776
BssMI GATC 3 cut(s) 94, 712, 1284
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 391, 860
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 1310
BstC8I GCNNGC 2 cut(s) 499, 604
BstDEI CTNAG 4 cut(s) 682, 841, 1248, 1281
BstF5I GGATG 3 cut(s) 883, 1228, 1258
BstFNI CGCG 1 cut(s) 875
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 97, 715, 1287
BstMAI GTCTC 1 cut(s) 963
BstMBI GATC 3 cut(s) 94, 712, 1284
BstMWI GCNNNNNNNGC 2 cut(s) 608, 1310
BstNI CCWGG 2 cut(s) 391, 860
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 3 cut(s) 389, 528, 858
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 1 cut(s) 875
BstV1I GCAGC 2 cut(s) 611, 1283
BstV2I GAAGAC 4 cut(s) 77, 237, 442, 1066
Bsu15I ATCGAT 1 cut(s) 1066
BsuRI GGCC 2 cut(s) 318, 781
BsuTUI ATCGAT 1 cut(s) 1066
BtsCI GGATG 3 cut(s) 883, 1228, 1258
BtsIMutI CAGTG 1 cut(s) 1245
Cac8I GCNNGC 2 cut(s) 499, 604
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 532, 829
ClaI ATCGAT 1 cut(s) 1066
CseI GACGC 1 cut(s) 881
Csp6I GTAC 2 cut(s) 247, 863
CviAII CATG 5 cut(s) 38, 227, 286, 368, 637
CviQI GTAC 2 cut(s) 247, 863
DdeI CTNAG 4 cut(s) 682, 841, 1248, 1281
DpnI GATC 3 cut(s) 96, 714, 1286
DpnII GATC 3 cut(s) 94, 712, 1284
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 532, 829
EcoRI GAATTC 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 389, 858
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 5 cut(s) 41, 230, 289, 371, 640
FalI AAGNNNNNCTT 2 cut(s) 1191, 1223
FatI CATG 5 cut(s) 37, 226, 285, 367, 636
FauI CCCGC 1 cut(s) 1276
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 2 cut(s) 600, 1272
FokI GGATG 3 cut(s) 890, 1235, 1265
Fsp4HI GCNGC 2 cut(s) 600, 1272
FspBI CTAG 6 cut(s) 68, 308, 494, 660, 812, 995
GlaI GCGC 1 cut(s) 303
GluI GCNGC 2 cut(s) 600, 1272
GsuI CTGGAG 1 cut(s) 1075
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 318, 781
HapII CCGG 1 cut(s) 530
HgaI GACGC 1 cut(s) 881
HhaI GCGC 1 cut(s) 304
Hin1II CATG 5 cut(s) 41, 230, 289, 371, 640
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 9 cut(s) 19, 64, 172, 377, 416, 435, 806, 1039, 1078
HpaII CCGG 1 cut(s) 530
HphI GGTGA 3 cut(s) 445, 1207, 1270
Hpy166II GTNNAC 1 cut(s) 754
Hpy188I TCNGA 3 cut(s) 586, 769, 1038
Hpy188III TCNNGA 5 cut(s) 26, 89, 197, 515, 1187
Hpy8I GTNNAC 1 cut(s) 754
HpyAV CCTTC 3 cut(s) 131, 842, 929
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 6 cut(s) 190, 611, 1139, 1211, 1240, 1313
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 1310
HpyF3I CTNAG 4 cut(s) 682, 841, 1248, 1281
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 5 cut(s) 41, 230, 289, 371, 640
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 94, 712, 1284
LmnI GCTCC 2 cut(s) 309, 793
Lsp1109I GCAGC 2 cut(s) 611, 1283
LweI GCATC 2 cut(s) 939, 1227
MaeI CTAG 6 cut(s) 68, 308, 494, 660, 812, 995
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 6 cut(s) 236, 254, 685, 1043, 1094, 1167
MalI GATC 3 cut(s) 96, 714, 1286
MboI GATC 3 cut(s) 94, 712, 1284
MboII GAAGA 7 cut(s) 14, 77, 143, 242, 442, 857, 1071
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 6 cut(s) 507, 578, 694, 723, 1083, 1190
MluNI TGGCCA 1 cut(s) 318
MlyI GAGTC 1 cut(s) 166
Mox20I TGGCCA 1 cut(s) 318
MscI TGGCCA 1 cut(s) 318
MseI TTAA 7 cut(s) 471, 623, 672, 693, 912, 926, 1230
Msp20I TGGCCA 1 cut(s) 318
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 3 cut(s) 391, 530, 860
MvaI CCWGG 2 cut(s) 391, 860
MvnI CGCG 1 cut(s) 875
MwoI GCNNNNNNNGC 2 cut(s) 608, 1310
NciI CCSGG 1 cut(s) 530
NdeII GATC 3 cut(s) 94, 712, 1284
NlaIII CATG 5 cut(s) 41, 230, 289, 371, 640
NlaIV GGNNCC 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 757
NspI RCATGY 1 cut(s) 640
PciI ACATGT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 1063
PfeI GAWTC 8 cut(s) 19, 64, 377, 416, 435, 806, 1039, 1078
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 2 cut(s) 601, 1273
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PscI ACATGT 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 693
PsiI TTATAA 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 389, 858
PspGI CCWGG 2 cut(s) 389, 858
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 2 cut(s) 532, 829
RsaI GTAC 2 cut(s) 248, 864
RsaNI GTAC 2 cut(s) 247, 863
SalI GTCGAC 1 cut(s) 752
SaqAI TTAA 7 cut(s) 471, 623, 672, 693, 912, 926, 1230
SatI GCNGC 2 cut(s) 600, 1272
Sau3AI GATC 3 cut(s) 94, 712, 1284
Sau96I GGNCC 2 cut(s) 532, 829
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 391, 530, 860
SfaNI GCATC 2 cut(s) 939, 1227
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 2 cut(s) 532, 829
SmlI CTYRAG 3 cut(s) 513, 614, 671
SmoI CTYRAG 3 cut(s) 513, 614, 671
Sse9I AATT 6 cut(s) 507, 578, 694, 723, 1083, 1190
SsiI CCGC 2 cut(s) 875, 1269
SspMI CTAG 6 cut(s) 68, 308, 494, 660, 812, 995
StyD4I CCNGG 3 cut(s) 389, 528, 858
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 332
TaqI TCGA 4 cut(s) 17, 74, 753, 1066
TasI AATT 6 cut(s) 507, 578, 694, 723, 1083, 1190
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 8 cut(s) 19, 64, 377, 416, 435, 806, 1039, 1078
Tru1I TTAA 7 cut(s) 471, 623, 672, 693, 912, 926, 1230
Tru9I TTAA 7 cut(s) 471, 623, 672, 693, 912, 926, 1230
TscAI CASTG 1 cut(s) 1252
TseI GCWGC 2 cut(s) 599, 1271
TspDTI ATGAA 7 cut(s) 17, 77, 243, 274, 363, 824, 1266
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 1252
Van91I CCANNNNNTGG 1 cut(s) 373
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 532, 829
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 2 cut(s) 507, 1083
XceI RCATGY 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 2 cut(s) 463, 823
XmaJI CCTAGG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 6 cut(s) 68, 308, 494, 660, 812, 995
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.