AT3G59460

Belongs to the SKP1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21977513 .. 21978398
886 bp
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UTR
Exon/CDS
Intron
AT3G59460.1

Sequence Viewer

Length: 192 bp
ATGGCCAAGATGGTGATTCTTCGCTGTGTTAGACGTGGACTACTTCTACCGGTGTTCAACAATCTGGTAAGCTTGTCTTTTGGGAGTACGAACAAAAGAGGTTGGAAACTGCTGCCACTTCTGATTGAGCAGTCTCCAAAGCTTGAAACTCTAATCATCCAGGGGCTGGATAGAGTTACACAGGCGATGTGA
Functional Annotation

Protein Analysis

63

Amino Acids

7.12

Weight (kDa)

10.95

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 58, 146
AjiI CACGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 72, 142
AluI AGCT 2 cut(s) 72, 142
Alw26I GTCTC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 112
AsiGI ACCGGT 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 25
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 49
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 49
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 49
Csp6I GTAC 1 cut(s) 87
CspAI ACCGGT 1 cut(s) 49
CviJI RGCY 4 cut(s) 5, 72, 142, 166
CviKI_1 RGCY 4 cut(s) 5, 72, 142, 166
CviQI GTAC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 159
FalI AAGNNNNNCTT 2 cut(s) 61, 93
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 50
HindIII AAGCTT 2 cut(s) 70, 140
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 34
LpnPI CCDG 6 cut(s) 50, 63, 146, 152, 167, 173
Lsp1109I GCAGC 1 cut(s) 99
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 161
SetI ASST 4 cut(s) 37, 74, 103, 144
SgeI CNNG 9 cut(s) 19, 47, 62, 77, 85, 155, 172, 173, 179
StyD4I CCNGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 37
TfiI GAWTC 1 cut(s) 16
TseI GCWGC 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.