AT3G58920

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
21776293 .. 21777988
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58920.1

Sequence Viewer

Length: 1413 bp
ATGGATAGGATTAGCAATCTACCAAATGAGATCATTTGCCACATCGTATCGTTCCTTTCTGCAAAGGAAGCTGCTTTCGCATCAGTTCTGTCAAAGAGGTGGCAGAATCTCTTTACCATTGTACAAAAACTTGAGTTTGATGACTCAGTCAAGAATCAAGGGAGTTTGATGGATTTTGTCAATGGCGTATTGGCTCTTCCGGTCACTACCCGCATTAGTAAGTTCTCTCTAAGATTTGACAGTTTTTTAAAGCGGAAACTTGAGACTGGTCTTGTTATTGGTCCACATGTTGTCAACCGTTGTCTCTGTAATGTCCTGAAGCGTGGTGTCTTGGATCTTAAACTGGAAATATATGGTGAAGATGGATATTTACTGCCTTCTGAGGTCTTCACTTGCAAAACAATTGTTGACCTGAAACTCACTTCCTGCATATTCGCTGAGTCTTATGTTATTGATGTTATCCCTGAGAATGCATTCCTTCCGGGGCTTGAGTCTCTCTTTCTCAAATCAATTTGGTTCTCTGATCTACGCGGATGTGCTTTCCAAACGCTTCTTTCTGCTTGTCCTGTGCTTAAGACATTAACCATATATGATGTGCAGTGGGAAAAATGGAAATGGTCTCGCACTGTATCAAGTGCAACCCTTGAAAGGCTTATTATTCAACGTACAGAATTCACTTATTTTAACGGGTCTGATTTCAAAAGCATTACTTTTGATACTCCGAGTCTTACCTACTTAAAGTACATTGATTTTGTTCCGGAGGAGTATCCAGTTGTTAATCTTGATTCCATTGTCGAAGCCAAGCTCCATCTTATTCTCACTGGGAATCAAGATTACCCTGTAAGATACCTAGGCCGAGAAGATGATCCTATTACAAGCAATCCAACTAATTTGATCAAGGGGTTAAGAAATGTTGAGATCTTGCATTTATCTACTGCAACTGCGCAGATGCTTTGTTTCTTCCCCCGTGAAACACTTCCAGAGTTTGTAAACCTACATCATTTAACTATTGGACCAACTTATTACGAGTGTTTTAACTGGCGACTTCTGCCAATTTTGCTAAAAAAGACTCCAAATCTAAAGACGCTCATGATCAAGGGTCCATTGCATTTGTACTACAGAGACTTCAATGATGATGAAGAAGAAGAAGAACCTGAATATTATTGCGAGTGCTCGTCGGGATGTAATTGTCTATTGTCATGTCATATGGAAGTCCTGGAGATCTCCCATTACAGAGGAACTACCAAAGAACTGGAGAAACTGAAGCATTTCTTAGGGAAGTTGTCATGTCTTGAGCATGTGAAACTTGGTGTTTGGGCAAGTAGCGACAAGGAAAAGTTGAGTATCACCACTGATCTACTAATGCTTCCTAGAGCTTCGGTCAATTGTAAGATCCAGATCAACTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

470

Amino Acids

53.92

Weight (kDa)

5.94

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 2.7e-08 F-box domain
LRR_At5g56370 PF24758 107 - 223 6.1e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 945
AccII CGCG 1 cut(s) 531
AccIII TCCGGA 1 cut(s) 757
AciI CCGC 3 cut(s) 211, 253, 531
AclWI GGATC 3 cut(s) 342, 860, 1387
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 2 cut(s) 338, 1283
AfaI GTAC 4 cut(s) 123, 667, 743, 1115
AfiI CCNNNNNNNGG 1 cut(s) 648
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 4 cut(s) 647, 662, 700, 1129
AjnI CCWGG 1 cut(s) 1215
AluBI AGCT 3 cut(s) 71, 805, 1376
AluI AGCT 3 cut(s) 71, 805, 1376
Alw21I GWGCWC 1 cut(s) 1175
Alw26I GTCTC 5 cut(s) 257, 308, 498, 624, 1116
AlwI GGATC 3 cut(s) 342, 860, 1387
Aor13HI TCCGGA 1 cut(s) 757
AoxI GGCC 1 cut(s) 853
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 671
Asp700I GAANNNNTTC 3 cut(s) 473, 975, 1268
AspA2I CCTAGG 1 cut(s) 850
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 3 cut(s) 281, 1013, 1100
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 368, 1339
AvaII GGWCC 3 cut(s) 281, 1013, 1100
AvrII CCTAGG 1 cut(s) 850
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 1175
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 163, 356, 816
BciT130I CCWGG 1 cut(s) 1217
BciVI GTATCC 1 cut(s) 777
BclI TGATCA 2 cut(s) 894, 1092
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 5 cut(s) 257, 308, 498, 624, 1116
BfaI CTAG 2 cut(s) 851, 1371
BfmI CTRYAG 1 cut(s) 1117
BfrI CTTAAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 777
BglII AGATCT 2 cut(s) 918, 1221
BisI GCNGC 1 cut(s) 72
BlnI CCTAGG 1 cut(s) 850
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 483, 1217
Bme18I GGWCC 3 cut(s) 281, 1013, 1100
BmgT120I GGNCC 3 cut(s) 281, 1013, 1100
BmiI GGNNCC 1 cut(s) 1101
BmrFI CCNGG 2 cut(s) 483, 1217
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 2 cut(s) 89, 939
BmuI ACTGGG 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 2 cut(s) 1238, 1274
BpuEI CTTGAG 4 cut(s) 152, 281, 509, 1313
BpuMI CCSGG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 1397
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 2 cut(s) 482, 850
BsaWI WCCGGW 2 cut(s) 199, 757
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse1I ACTGG 6 cut(s) 271, 348, 770, 826, 1043, 1257
Bse3DI GCAATG 1 cut(s) 1103
Bse8I GATNNNNATC 1 cut(s) 1397
BseAI TCCGGA 1 cut(s) 757
BseBI CCWGG 1 cut(s) 1217
BseDI CCNNGG 2 cut(s) 482, 850
BseGI GGATG 2 cut(s) 539, 1187
BseJI GATNNNNATC 1 cut(s) 1397
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMI GCAATG 1 cut(s) 1103
BseMII CTCAG 4 cut(s) 159, 372, 429, 456
BseNI ACTGG 6 cut(s) 271, 348, 770, 826, 1043, 1257
BseRI GAGGAG 1 cut(s) 776
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 1175
BsiSI CCGG 3 cut(s) 200, 482, 758
BslI CCNNNNNNNGG 1 cut(s) 648
BsmAI GTCTC 5 cut(s) 257, 308, 498, 624, 1116
BsmI GAATGC 2 cut(s) 473, 475
BsnI GGCC 1 cut(s) 855
Bso31I GGTCTC 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 1175
Bsp13I TCCGGA 1 cut(s) 757
Bsp1407I TGTACA 1 cut(s) 121
BspACI CCGC 3 cut(s) 211, 253, 531
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 4 cut(s) 158, 373, 430, 457
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 1 cut(s) 531
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 1 cut(s) 1101
BspPI GGATC 3 cut(s) 342, 860, 1387
BspQI GCTCTTC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 1103
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 6 cut(s) 271, 348, 770, 826, 1043, 1257
BssECI CCNNGG 2 cut(s) 482, 850
BssT1I CCWWGG 1 cut(s) 850
Bst2UI CCWGG 1 cut(s) 1217
Bst4CI ACNGT 3 cut(s) 242, 299, 628
Bst6I CTCTTC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 572
BstAUI TGTACA 1 cut(s) 121
BstDEI CTNAG 6 cut(s) 145, 230, 381, 438, 465, 1273
BstF5I GGATG 2 cut(s) 539, 1187
BstFNI CGCG 1 cut(s) 531
BstHHI GCGC 1 cut(s) 946
BstMAI GTCTC 5 cut(s) 257, 308, 498, 624, 1116
BstMWI GCNNNNNNNGC 4 cut(s) 68, 77, 1048, 1057
BstNI CCWGG 1 cut(s) 1217
BstNSI RCATGY 2 cut(s) 290, 1301
BstSCI CCNGG 2 cut(s) 481, 1215
BstSFI CTRYAG 1 cut(s) 1117
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 4 cut(s) 334, 918, 1221, 1392
BstXI CCANNNNNNTGG 1 cut(s) 1252
BstYI RGATCY 4 cut(s) 334, 918, 1221, 1392
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 1 cut(s) 855
BtsCI GGATG 2 cut(s) 539, 1187
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 4 cut(s) 605, 624, 819, 1350
CciI TCATGA 1 cut(s) 1089
CfoI GCGC 1 cut(s) 946
Cfr13I GGNCC 3 cut(s) 281, 1013, 1100
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 4 cut(s) 122, 666, 742, 1114
CviAII CATG 5 cut(s) 287, 1090, 1200, 1287, 1298
CviJI RGCY 8 cut(s) 71, 194, 487, 652, 800, 805, 855, 1376
CviKI_1 RGCY 8 cut(s) 71, 194, 487, 652, 800, 805, 855, 1376
CviQI GTAC 4 cut(s) 122, 666, 742, 1114
DdeI CTNAG 6 cut(s) 145, 230, 381, 438, 465, 1273
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 850
Eco31I GGTCTC 1 cut(s) 624
Eco47I GGWCC 3 cut(s) 281, 1013, 1100
Eco57I CTGAAG 2 cut(s) 338, 1283
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 1215
EcoT14I CCWWGG 1 cut(s) 850
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 850
FaeI CATG 5 cut(s) 290, 1093, 1203, 1290, 1301
FalI AAGNNNNNCTT 4 cut(s) 694, 726, 1256, 1288
FatI CATG 5 cut(s) 286, 1089, 1199, 1286, 1297
FauI CCCGC 1 cut(s) 218
FauNDI CATATG 1 cut(s) 1206
FbaI TGATCA 2 cut(s) 894, 1092
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 546, 1194
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 851, 1371
FspI TGCGCA 1 cut(s) 945
GlaI GCGC 1 cut(s) 945
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 2 cut(s) 1238, 1274
HaeIII GGCC 1 cut(s) 855
HapII CCGG 3 cut(s) 200, 482, 758
HgaI GACGC 1 cut(s) 1093
HhaI GCGC 1 cut(s) 946
Hin1II CATG 5 cut(s) 290, 1093, 1203, 1290, 1301
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 2 cut(s) 295, 409
HindII GTYRAC 2 cut(s) 295, 409
HinfI GANTC 9 cut(s) 106, 143, 154, 440, 491, 724, 785, 826, 1069
HpaII CCGG 3 cut(s) 200, 482, 758
HphI GGTGA 2 cut(s) 368, 1339
Hpy166II GTNNAC 4 cut(s) 284, 295, 409, 991
Hpy188I TCNGA 4 cut(s) 382, 523, 694, 723
Hpy8I GTNNAC 4 cut(s) 284, 295, 409, 991
Hpy99I CGWCG 1 cut(s) 1180
HpyAV CCTTC 2 cut(s) 387, 488
HpyCH4III ACNGT 3 cut(s) 242, 299, 628
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 9 cut(s) 62, 396, 429, 473, 598, 638, 925, 938, 1108
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 77, 1048, 1057
HpyF3I CTNAG 6 cut(s) 145, 230, 381, 438, 465, 1273
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 5 cut(s) 290, 1093, 1203, 1290, 1301
HspAI GCGC 1 cut(s) 944
Kpn2I TCCGGA 1 cut(s) 757
Ksp22I TGATCA 2 cut(s) 894, 1092
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 810
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 89, 939
MaeI CTAG 2 cut(s) 851, 1371
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 1 cut(s) 202
MboII GAAGA 9 cut(s) 188, 371, 379, 872, 952, 1151, 1154, 1157, 1160
MfeI CAATTG 2 cut(s) 402, 1384
MflI RGATCY 4 cut(s) 334, 918, 1221, 1392
MhlI GDGCHC 1 cut(s) 1175
MluCI AATT 7 cut(s) 402, 510, 671, 889, 1053, 1186, 1384
MlyI GAGTC 5 cut(s) 137, 449, 500, 733, 1063
MmeI TCCRAC 1 cut(s) 908
MnlI CCTC 4 cut(s) 90, 376, 754, 1229
Mph1103I ATGCAT 1 cut(s) 475
MroI TCCGGA 1 cut(s) 757
MroXI GAANNNNTTC 3 cut(s) 473, 975, 1268
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 3 cut(s) 200, 482, 758
MspR9I CCNGG 2 cut(s) 483, 1217
MunI CAATTG 2 cut(s) 402, 1384
Mva1269I GAATGC 2 cut(s) 473, 475
MvaI CCWGG 1 cut(s) 1217
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 4 cut(s) 68, 77, 1048, 1057
NciI CCSGG 1 cut(s) 483
NdeI CATATG 1 cut(s) 1206
NlaIII CATG 5 cut(s) 290, 1093, 1203, 1290, 1301
NlaIV GGNNCC 1 cut(s) 1101
NmeAIII GCCGAG 1 cut(s) 881
NmuCI GTSAC 1 cut(s) 202
NsbI TGCGCA 1 cut(s) 945
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 2 cut(s) 290, 1301
PagI TCATGA 1 cut(s) 1089
PciI ACATGT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 2 cut(s) 473, 475
PdmI GAANNNNTTC 3 cut(s) 473, 975, 1268
PfeI GAWTC 4 cut(s) 106, 154, 785, 826
PflFI GACNNNGTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 1215
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 5 cut(s) 137, 448, 499, 732, 1063
PpsI GAGTC 5 cut(s) 137, 448, 499, 732, 1063
PscI ACATGT 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 1215
PspGI CCWGG 1 cut(s) 1215
PspN4I GGNNCC 1 cut(s) 1101
PspPI GGNCC 3 cut(s) 281, 1013, 1100
PsuI RGATCY 4 cut(s) 334, 918, 1221, 1392
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 4 cut(s) 123, 667, 743, 1115
RsaNI GTAC 4 cut(s) 122, 666, 742, 1114
SapI GCTCTTC 1 cut(s) 201
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 3 cut(s) 281, 1013, 1100
SchI GAGTC 5 cut(s) 137, 449, 500, 733, 1063
ScrFI CCNGG 2 cut(s) 483, 1217
SduI GDGCHC 1 cut(s) 1175
SfaNI GCATC 2 cut(s) 89, 939
SfcI CTRYAG 1 cut(s) 1117
SinI GGWCC 3 cut(s) 281, 1013, 1100
SmlI CTYRAG 5 cut(s) 131, 260, 488, 572, 1292
SmoI CTYRAG 5 cut(s) 131, 260, 488, 572, 1292
Sse9I AATT 7 cut(s) 402, 510, 671, 889, 1053, 1186, 1384
SsiI CCGC 3 cut(s) 211, 253, 531
SspI AATATT 1 cut(s) 1160
SspMI CTAG 2 cut(s) 851, 1371
StyD4I CCNGG 2 cut(s) 481, 1215
StyI CCWWGG 1 cut(s) 850
TaaI ACNGT 3 cut(s) 242, 299, 628
TaiI ACGT 1 cut(s) 667
TaqI TCGA 1 cut(s) 795
TaqII GACCGA 1 cut(s) 1369
TasI AATT 7 cut(s) 402, 510, 671, 889, 1053, 1186, 1384
TatI WGTACW 3 cut(s) 121, 741, 1113
TfiI GAWTC 4 cut(s) 106, 154, 785, 826
TscAI CASTG 4 cut(s) 605, 631, 826, 1357
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 1152
TspRI CASTG 4 cut(s) 605, 631, 826, 1357
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 572
VpaK11BI GGWCC 3 cut(s) 281, 1013, 1100
XapI RAATTY 1 cut(s) 671
XceI RCATGY 2 cut(s) 290, 1301
XmaJI CCTAGG 1 cut(s) 850
XmnI GAANNNNTTC 3 cut(s) 473, 975, 1268
XspI CTAG 2 cut(s) 851, 1371
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.