BEST Arabidopsis thaliana protein match is F-box RNI-like superfamily protein (TAIR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 872 |
| AccI | GTMKAC | 2 cut(s) | 399, 711 |
| AciI | CCGC | 1 cut(s) | 121 |
| AclWI | GGATC | 2 cut(s) | 12, 287 |
| AcsI | RAATTY | 5 cut(s) | 195, 364, 377, 757, 1033 |
| AcuI | CTGAAG | 2 cut(s) | 446, 905 |
| AfaI | GTAC | 2 cut(s) | 927, 1017 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 367, 1001 |
| AflII | CTTAAG | 1 cut(s) | 485 |
| AgsI | TTSAA | 7 cut(s) | 464, 518, 718, 776, 802, 961, 1049 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 743, 775 |
| AluBI | AGCT | 6 cut(s) | 89, 430, 484, 544, 654, 779 |
| AluI | AGCT | 6 cut(s) | 89, 430, 484, 544, 654, 779 |
| Alw26I | GTCTC | 1 cut(s) | 182 |
| AlwI | GGATC | 2 cut(s) | 12, 287 |
| AoxI | GGCC | 1 cut(s) | 1066 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ApoI | RAATTY | 5 cut(s) | 195, 364, 377, 757, 1033 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 468 |
| AsuC2I | CCSGG | 1 cut(s) | 1020 |
| AsuII | TTCGAA | 1 cut(s) | 110 |
| BbsI | GAAGAC | 1 cut(s) | 899 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BccI | CCATC | 4 cut(s) | 278, 831, 989, 999 |
| BciVI | GTATCC | 2 cut(s) | 352, 756 |
| BcnI | CCSGG | 1 cut(s) | 1020 |
| BcoDI | GTCTC | 1 cut(s) | 182 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfmI | CTRYAG | 1 cut(s) | 861 |
| BfrI | CTTAAG | 1 cut(s) | 485 |
| BfuI | GTATCC | 2 cut(s) | 352, 756 |
| BisI | GCNGC | 1 cut(s) | 90 |
| BlsI | GCNGC | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 1 cut(s) | 1020 |
| BmrFI | CCNGG | 1 cut(s) | 1020 |
| BmsI | GCATC | 1 cut(s) | 934 |
| BpiI | GAAGAC | 1 cut(s) | 899 |
| Bpu10I | CCTNAGC | 2 cut(s) | 431, 644 |
| Bpu14I | TTCGAA | 1 cut(s) | 110 |
| BpuEI | CTTGAG | 3 cut(s) | 587, 620, 1013 |
| BpuMI | CCSGG | 1 cut(s) | 1020 |
| Bsa29I | ATCGAT | 1 cut(s) | 786 |
| BsaBI | GATNNNNATC | 2 cut(s) | 351, 471 |
| BsaJI | CCNNGG | 4 cut(s) | 311, 615, 1063, 1121 |
| BsaWI | WCCGGW | 1 cut(s) | 40 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 367, 1001 |
| Bse1I | ACTGG | 2 cut(s) | 296, 420 |
| Bse3DI | GCAATG | 2 cut(s) | 862, 892 |
| Bse8I | GATNNNNATC | 2 cut(s) | 351, 471 |
| BseCI | ATCGAT | 1 cut(s) | 786 |
| BseDI | CCNNGG | 4 cut(s) | 311, 615, 1063, 1121 |
| BseGI | GGATG | 4 cut(s) | 49, 163, 1010, 1071 |
| BseJI | GATNNNNATC | 2 cut(s) | 351, 471 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 367, 1001 |
| BseMI | GCAATG | 2 cut(s) | 862, 892 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseNI | ACTGG | 2 cut(s) | 296, 420 |
| BseRI | GAGGAG | 1 cut(s) | 243 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 1068 |
| BshVI | ATCGAT | 1 cut(s) | 786 |
| BsiSI | CCGG | 2 cut(s) | 41, 1019 |
| BslFI | GGGAC | 3 cut(s) | 125, 543, 611 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 367, 1001 |
| BsmAI | GTCTC | 1 cut(s) | 182 |
| BsmBI | CGTCTC | 1 cut(s) | 182 |
| BsmFI | GGGAC | 3 cut(s) | 125, 543, 611 |
| BsnI | GGCC | 1 cut(s) | 1068 |
| Bsp119I | TTCGAA | 1 cut(s) | 110 |
| Bsp143I | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| BspACI | CCGC | 1 cut(s) | 121 |
| BspANI | GGCC | 1 cut(s) | 1068 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspDI | ATCGAT | 1 cut(s) | 786 |
| BspPI | GGATC | 2 cut(s) | 12, 287 |
| BspQI | GCTCTTC | 1 cut(s) | 513 |
| BspT104I | TTCGAA | 1 cut(s) | 110 |
| BspTI | CTTAAG | 1 cut(s) | 485 |
| BsrDI | GCAATG | 2 cut(s) | 862, 892 |
| BsrI | ACTGG | 2 cut(s) | 296, 420 |
| BssECI | CCNNGG | 4 cut(s) | 311, 615, 1063, 1121 |
| BssMI | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| BssNAI | GTATAC | 1 cut(s) | 712 |
| BssT1I | CCWWGG | 2 cut(s) | 311, 1063 |
| Bst1107I | GTATAC | 1 cut(s) | 712 |
| Bst4CI | ACNGT | 2 cut(s) | 733, 938 |
| Bst6I | CTCTTC | 2 cut(s) | 513, 924 |
| BstAFI | CTTAAG | 1 cut(s) | 485 |
| BstBI | TTCGAA | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 3 cut(s) | 656, 739, 1025 |
| BstDEI | CTNAG | 5 cut(s) | 8, 180, 431, 644, 1136 |
| BstF5I | GGATG | 4 cut(s) | 49, 163, 1010, 1071 |
| BstKTI | GATC | 5 cut(s) | 7, 295, 349, 355, 790 |
| BstMAI | GTCTC | 1 cut(s) | 182 |
| BstMBI | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 490, 541 |
| BstSCI | CCNGG | 1 cut(s) | 1018 |
| BstSFI | CTRYAG | 1 cut(s) | 861 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BstV2I | GAAGAC | 1 cut(s) | 899 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BstZ17I | GTATAC | 1 cut(s) | 712 |
| Bsu15I | ATCGAT | 1 cut(s) | 786 |
| BsuI | GTATCC | 2 cut(s) | 352, 756 |
| BsuRI | GGCC | 1 cut(s) | 1068 |
| BsuTUI | ATCGAT | 1 cut(s) | 786 |
| BtsCI | GGATG | 4 cut(s) | 49, 163, 1010, 1071 |
| BtsIMutI | CAGTG | 1 cut(s) | 413 |
| Cac8I | GCNNGC | 3 cut(s) | 656, 739, 1025 |
| ClaI | ATCGAT | 1 cut(s) | 786 |
| CseI | GACGC | 1 cut(s) | 499 |
| Csp6I | GTAC | 2 cut(s) | 926, 1016 |
| CviAII | CATG | 2 cut(s) | 524, 562 |
| CviQI | GTAC | 2 cut(s) | 926, 1016 |
| DdeI | CTNAG | 5 cut(s) | 8, 180, 431, 644, 1136 |
| DpnI | GATC | 5 cut(s) | 6, 294, 348, 354, 789 |
| DpnII | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| Eam1104I | CTCTTC | 2 cut(s) | 513, 924 |
| EarI | CTCTTC | 2 cut(s) | 513, 924 |
| Eco130I | CCWWGG | 2 cut(s) | 311, 1063 |
| Eco147I | AGGCCT | 1 cut(s) | 1068 |
| Eco57I | CTGAAG | 2 cut(s) | 446, 905 |
| EcoRI | GAATTC | 1 cut(s) | 1033 |
| EcoT14I | CCWWGG | 2 cut(s) | 311, 1063 |
| ErhI | CCWWGG | 2 cut(s) | 311, 1063 |
| Esp3I | CGTCTC | 1 cut(s) | 182 |
| FaeI | CATG | 2 cut(s) | 527, 565 |
| FaqI | GGGAC | 3 cut(s) | 125, 543, 611 |
| FatI | CATG | 2 cut(s) | 523, 561 |
| FblI | GTMKAC | 2 cut(s) | 399, 711 |
| Fnu4HI | GCNGC | 1 cut(s) | 90 |
| FokI | GGATG | 4 cut(s) | 56, 170, 1017, 1058 |
| Fsp4HI | GCNGC | 1 cut(s) | 90 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 90 |
| HaeIII | GGCC | 1 cut(s) | 1068 |
| HapII | CCGG | 2 cut(s) | 41, 1019 |
| HgaI | GACGC | 1 cut(s) | 499 |
| Hin1II | CATG | 2 cut(s) | 527, 565 |
| HindIII | AAGCTT | 2 cut(s) | 482, 542 |
| HinfI | GANTC | 8 cut(s) | 161, 175, 371, 703, 764, 895, 970, 1132 |
| HpaII | CCGG | 2 cut(s) | 41, 1019 |
| Hpy166II | GTNNAC | 4 cut(s) | 38, 400, 712, 723 |
| Hpy188I | TCNGA | 7 cut(s) | 174, 346, 376, 702, 750, 996, 1125 |
| Hpy188III | TCNNGA | 9 cut(s) | 18, 149, 179, 350, 581, 637, 985, 1030, 1046 |
| Hpy8I | GTNNAC | 4 cut(s) | 38, 400, 712, 723 |
| HpyAV | CCTTC | 3 cut(s) | 79, 399, 1120 |
| HpyCH4III | ACNGT | 2 cut(s) | 733, 938 |
| HpyCH4V | TGCA | 5 cut(s) | 241, 408, 737, 885, 1113 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 490, 541 |
| HpyF3I | CTNAG | 5 cut(s) | 8, 180, 431, 644, 1136 |
| Hsp92II | CATG | 2 cut(s) | 527, 565 |
| Kzo9I | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| LguI | GCTCTTC | 1 cut(s) | 513 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| LweI | GCATC | 1 cut(s) | 934 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MalI | GATC | 5 cut(s) | 6, 294, 348, 354, 789 |
| MboI | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| MboII | GAAGA | 6 cut(s) | 476, 530, 782, 904, 911, 1051 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 7 cut(s) | 195, 247, 364, 377, 757, 817, 1033 |
| MlyI | GAGTC | 3 cut(s) | 155, 889, 964 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| MnlI | CCTC | 9 cut(s) | 83, 264, 496, 562, 625, 633, 816, 1079, 1131 |
| MroXI | GAANNNNTTC | 1 cut(s) | 468 |
| MseI | TTAA | 2 cut(s) | 486, 977 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1090 |
| MspCI | CTTAAG | 1 cut(s) | 485 |
| MspI | CCGG | 2 cut(s) | 41, 1019 |
| MspR9I | CCNGG | 1 cut(s) | 1020 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 490, 541 |
| NciI | CCSGG | 1 cut(s) | 1020 |
| NdeII | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| NlaIII | CATG | 2 cut(s) | 527, 565 |
| NspV | TTCGAA | 1 cut(s) | 110 |
| PceI | AGGCCT | 1 cut(s) | 1068 |
| PciSI | GCTCTTC | 1 cut(s) | 513 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 1 cut(s) | 468 |
| PfeI | GAWTC | 5 cut(s) | 175, 371, 703, 764, 1132 |
| PkrI | GCNGC | 1 cut(s) | 91 |
| PleI | GAGTC | 3 cut(s) | 155, 889, 964 |
| PpsI | GAGTC | 3 cut(s) | 155, 889, 964 |
| PsiI | TTATAA | 1 cut(s) | 872 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 2 cut(s) | 927, 1017 |
| RsaNI | GTAC | 2 cut(s) | 926, 1016 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1090 |
| SapI | GCTCTTC | 1 cut(s) | 513 |
| SaqAI | TTAA | 2 cut(s) | 486, 977 |
| SatI | GCNGC | 1 cut(s) | 90 |
| Sau3AI | GATC | 5 cut(s) | 4, 292, 346, 352, 787 |
| SchI | GAGTC | 3 cut(s) | 155, 889, 964 |
| ScrFI | CCNGG | 1 cut(s) | 1020 |
| SfaNI | GCATC | 1 cut(s) | 934 |
| SfcI | CTRYAG | 1 cut(s) | 861 |
| SfuI | TTCGAA | 1 cut(s) | 110 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1090 |
| SmlI | CTYRAG | 4 cut(s) | 485, 566, 635, 1028 |
| SmoI | CTYRAG | 4 cut(s) | 485, 566, 635, 1028 |
| Sse9I | AATT | 7 cut(s) | 195, 247, 364, 377, 757, 817, 1033 |
| SseBI | AGGCCT | 1 cut(s) | 1068 |
| SsiI | CCGC | 1 cut(s) | 121 |
| SspI | AATATT | 1 cut(s) | 957 |
| SspMI | CTAG | 1 cut(s) | 18 |
| StuI | AGGCCT | 1 cut(s) | 1068 |
| StyD4I | CCNGG | 1 cut(s) | 1018 |
| StyI | CCWWGG | 2 cut(s) | 311, 1063 |
| TaaI | ACNGT | 2 cut(s) | 733, 938 |
| TaqI | TCGA | 3 cut(s) | 110, 786, 984 |
| TasI | AATT | 7 cut(s) | 195, 247, 364, 377, 757, 817, 1033 |
| TfiI | GAWTC | 5 cut(s) | 175, 371, 703, 764, 1132 |
| Tru1I | TTAA | 2 cut(s) | 486, 977 |
| Tru9I | TTAA | 2 cut(s) | 486, 977 |
| TscAI | CASTG | 1 cut(s) | 420 |
| TseI | GCWGC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 2 cut(s) | 461, 589 |
| TspGWI | ACGGA | 2 cut(s) | 206, 290 |
| TspRI | CASTG | 1 cut(s) | 420 |
| Vha464I | CTTAAG | 1 cut(s) | 485 |
| XapI | RAATTY | 5 cut(s) | 195, 364, 377, 757, 1033 |
| XbaI | TCTAGA | 1 cut(s) | 17 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 830 |
| XmiI | GTMKAC | 2 cut(s) | 399, 711 |
| XmnI | GAANNNNTTC | 1 cut(s) | 468 |
| XspI | CTAG | 1 cut(s) | 18 |