AT5G41840

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000813
Physical Location & Seq
Reverse (-)
16754436 .. 16756263
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41840.1

Sequence Viewer

Length: 1623 bp
ATGAAATCGAGGAAGAAGGTTGTTGTTGGTGTTTCTGGAGATAGAATCAGCGGTTTACCAGACGCACTCATTTGCCACATCTTATCATTCCTTCCAACAAAAGAAGCTGCTTCAACTACTGTTCTTGCCAAAAGATGGAAGCCTTTGCTTGCTTTTGTTCCAAATCTTAACTTTGATGACTCCATCTATTTCCATCCTCGAGCGAGAAGAAACAAGTATTCTAAAAGTTACGAAAGTTTTATGAGTTTCGTGGATAGTGTATTGGCTTTGCAAGCGAAAACGAAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAGATGTTGTTGATCAATCTTGGGTTCTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATTTACACATCACTTCGTCTCGCAATTATTGTGAAAACTCAAGTTTTTATTCTCTGCCTTCTAAGATCTTTGTAAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCCATATTGATGTGGAAGGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTAAGATAGAAACGAGTATGCTTAACAAGCTTCTTTCTGGCTGTCACGCGCTCGAAGAGTTGGTGCTGGCTAATTTGATGTGGGCTGATTCTTCAGAAGATGAAGCTTGCCATGTGTCAGTGTCTATCCCAACCCTCAAGAGACTAAATTTTTGCCGTTCTGAAGATTTCTATGAGGGTGAGTTTCATTTTTATGAAGACTATGATGAGGAGAACATTAACGAGGGAGTGTCATTGTCGTTTGATAATCCGAATTTGGTTTACCTTGAATATTCTGATGTTATTGTGGACAAGTATAAACAAGTAAGTTTTGACTCGCTTGTCGAAGCTAATCTTAGACTTCGAAAGACACCCGATCAGGATGAAACAGACAAGGTTAATGTAACAAAGCTTCTCATGGGAATACACAATGTTAAGATCCTTTACTTGTCTGATGACACTCTTGAGGTCCTTTCTTGCTGCCGAGAAAGAATACCGGTATTCGACAACCTACTCGAGTTAACTATCAAGACTACACCATATGTAGGTTGGAAATCATTGCCACCTCTACTTAAGAGTTGTCCAAGTCTAGAAACATTGGTCTTCGAGGGGCTGCATCACAAGTATACAAAGAGATGTGGGGACAAGGACGGCTGCTTGTGCAAATATGAGAATCATTGGGGGACGAAGAAGAAGAAGAATGTCCGTACTTGCTTATCATCAAGTCTGGTGAAGGTTCTAAAGATATTGAAGTTTGGTGAAACTTTTGAGGATGAGAATGAGGATGGTCTTGATGTTGATCATGATGACTATGATGATGAAGATGCTGTGTCTTGTGATGAAGTTGGTGGTGTCGTAGAGGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGTTCTTAAACAAGTGATATTGTACTACAATACACCAAAAGATGAAGATGTGATGAAAGTGTTCAAGAAACTTGAGAAGCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATATCATCGAAGAACCTCAGCTTGTCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

540

Amino Acids

61.69

Weight (kDa)

6.02

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 116 - 243 2.2e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 887
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 1 cut(s) 1172
AccII CGCG 1 cut(s) 617
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 979
AcsI RAATTY 2 cut(s) 715, 820
AcuI CTGAAG 2 cut(s) 645, 750
AfaI GTAC 3 cut(s) 1255, 1472, 1612
AfiI CCNNNNNNNGG 2 cut(s) 135, 1091
AflII CTTAAG 2 cut(s) 545, 1118
AgeI ACCGGT 1 cut(s) 1042
AgsI TTSAA 7 cut(s) 114, 295, 347, 367, 836, 1297, 1513
AjiI CACGTC 1 cut(s) 307
AluBI AGCT 9 cut(s) 107, 544, 598, 674, 896, 958, 1528, 1547, 1584
AluI AGCT 9 cut(s) 107, 544, 598, 674, 896, 958, 1528, 1547, 1584
Alw26I GTCTC 3 cut(s) 411, 703, 1433
AlwI GGATC 1 cut(s) 979
Ama87I CYCGRG 3 cut(s) 198, 1061, 1533
ApeKI GCWGC 4 cut(s) 107, 1026, 1159, 1200
ApoI RAATTY 2 cut(s) 715, 820
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AsiGI ACCGGT 1 cut(s) 1042
Asp700I GAANNNNTTC 1 cut(s) 1508
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 1015
AsuHPI GGTGA 3 cut(s) 758, 1288, 1316
AsuII TTCGAA 1 cut(s) 910
AvaI CYCGRG 3 cut(s) 198, 1061, 1533
AvaII GGWCC 1 cut(s) 1015
BarI GAAGNNNNNNTAC 2 cut(s) 942, 974
BbsI GAAGAC 2 cut(s) 771, 1141
BbvCI CCTCAGC 1 cut(s) 1580
BbvI GCAGC 4 cut(s) 94, 1013, 1146, 1187
BccI CCATC 6 cut(s) 129, 191, 201, 494, 564, 1325
BceAI ACGGC 2 cut(s) 708, 1213
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 2 cut(s) 328, 1345
BcoDI GTCTC 3 cut(s) 411, 703, 1433
BfaI CTAG 2 cut(s) 1136, 1436
BfrI CTTAAG 2 cut(s) 545, 1118
BfuI GTATCC 1 cut(s) 345
BglII AGATCT 1 cut(s) 453
BisI GCNGC 4 cut(s) 108, 1027, 1160, 1201
BlsI GCNGC 4 cut(s) 109, 1028, 1161, 1202
Bme18I GGWCC 1 cut(s) 1015
BmeT110I CYCGRG 3 cut(s) 198, 1061, 1533
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 1015
BmsI GCATC 2 cut(s) 1171, 1360
BpiI GAAGAC 2 cut(s) 771, 1141
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 1580
Bpu14I TTCGAA 1 cut(s) 910
BpuEI CTTGAG 5 cut(s) 412, 467, 689, 1031, 1541
BsaBI GATNNNNATC 1 cut(s) 1344
BsaWI WCCGGW 1 cut(s) 1042
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 1091
Bse118I RCCGGY 2 cut(s) 1042, 1447
Bse3DI GCAATG 2 cut(s) 1103, 1561
Bse8I GATNNNNATC 1 cut(s) 1344
BseGI GGATG 5 cut(s) 193, 505, 934, 1324, 1336
BseJI GATNNNNATC 1 cut(s) 1344
BseLI CCNNNNNNNGG 2 cut(s) 135, 1091
BseMI GCAATG 2 cut(s) 1103, 1561
BseMII CTCAG 1 cut(s) 1594
BseRI GAGGAG 2 cut(s) 791, 1421
BseXI GCAGC 4 cut(s) 94, 1013, 1146, 1187
Bsh1236I CGCG 1 cut(s) 617
BshTI ACCGGT 1 cut(s) 1042
BsiHKCI CYCGRG 3 cut(s) 198, 1061, 1533
BsiSI CCGG 2 cut(s) 1043, 1448
BslFI GGGAC 2 cut(s) 1202, 1243
BslI CCNNNNNNNGG 2 cut(s) 135, 1091
BsmAI GTCTC 3 cut(s) 411, 703, 1433
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 2 cut(s) 1202, 1243
BsoBI CYCGRG 3 cut(s) 198, 1061, 1533
Bsp119I TTCGAA 1 cut(s) 910
Bsp143I GATC 5 cut(s) 328, 453, 922, 984, 1345
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 1593
BspFNI CGCG 1 cut(s) 617
BspHI TCATGA 1 cut(s) 1348
BspPI GGATC 1 cut(s) 979
BspT104I TTCGAA 1 cut(s) 910
BspTI CTTAAG 2 cut(s) 545, 1118
BsrDI GCAATG 2 cut(s) 1103, 1561
BsrFI RCCGGY 2 cut(s) 1042, 1447
BssAI RCCGGY 2 cut(s) 1042, 1447
BssMI GATC 5 cut(s) 328, 453, 922, 984, 1345
BssNAI GTATAC 1 cut(s) 1173
Bst1107I GTATAC 1 cut(s) 1173
Bst4CI ACNGT 2 cut(s) 121, 492
Bst6I CTCTTC 4 cut(s) 290, 540, 618, 1620
BstAFI CTTAAG 2 cut(s) 545, 1118
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 4 cut(s) 150, 273, 636, 676
BstDEI CTNAG 3 cut(s) 450, 902, 1580
BstF5I GGATG 5 cut(s) 193, 505, 934, 1324, 1336
BstFNI CGCG 1 cut(s) 617
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 5 cut(s) 331, 456, 925, 987, 1348
BstMAI GTCTC 3 cut(s) 411, 703, 1433
BstMBI GATC 5 cut(s) 328, 453, 922, 984, 1345
BstMWI GCNNNNNNNGC 5 cut(s) 272, 595, 1206, 1417, 1426
BstNSI RCATGY 1 cut(s) 1424
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 4 cut(s) 94, 1013, 1146, 1187
BstV2I GAAGAC 2 cut(s) 771, 1141
BstX2I RGATCY 2 cut(s) 453, 984
BstYI RGATCY 2 cut(s) 453, 984
BstZ17I GTATAC 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 345
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 5 cut(s) 193, 505, 934, 1324, 1336
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 4 cut(s) 150, 273, 636, 676
CciI TCATGA 1 cut(s) 1348
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 2 cut(s) 1042, 1447
Cfr13I GGNCC 1 cut(s) 1015
CseI GACGC 2 cut(s) 71, 1530
Csp6I GTAC 3 cut(s) 1254, 1471, 1611
CspAI ACCGGT 1 cut(s) 1042
CviAII CATG 4 cut(s) 680, 964, 1349, 1421
CviQI GTAC 3 cut(s) 1254, 1471, 1611
DdeI CTNAG 3 cut(s) 450, 902, 1580
DpnI GATC 5 cut(s) 330, 455, 924, 986, 1347
DpnII GATC 5 cut(s) 328, 453, 922, 984, 1345
DrdI GACNNNNNNGTC 1 cut(s) 887
DseDI GACNNNNNNGTC 1 cut(s) 887
Eam1104I CTCTTC 4 cut(s) 290, 540, 618, 1620
EarI CTCTTC 4 cut(s) 290, 540, 618, 1620
Eco47I GGWCC 1 cut(s) 1015
Eco57I CTGAAG 2 cut(s) 645, 750
Eco88I CYCGRG 3 cut(s) 198, 1061, 1533
EcoO109I RGGNCCY 1 cut(s) 1015
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 4 cut(s) 683, 967, 1352, 1424
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 2 cut(s) 1202, 1243
FatI CATG 4 cut(s) 679, 963, 1348, 1420
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 2 cut(s) 328, 1345
FblI GTMKAC 1 cut(s) 1172
Fnu4HI GCNGC 4 cut(s) 108, 1027, 1160, 1201
FokI GGATG 5 cut(s) 180, 512, 941, 1331, 1343
Fsp4HI GCNGC 4 cut(s) 108, 1027, 1160, 1201
FspBI CTAG 2 cut(s) 1136, 1436
GlaI GCGC 1 cut(s) 618
GluI GCNGC 4 cut(s) 108, 1027, 1160, 1201
GsuI CTGGAG 1 cut(s) 57
HapII CCGG 2 cut(s) 1043, 1448
HgaI GACGC 2 cut(s) 71, 1530
HhaI GCGC 1 cut(s) 619
Hin1II CATG 4 cut(s) 683, 967, 1352, 1424
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HindIII AAGCTT 5 cut(s) 542, 596, 672, 956, 1526
HinfI GANTC 5 cut(s) 45, 179, 656, 881, 1219
HpaI GTTAAC 1 cut(s) 1068
HpaII CCGG 2 cut(s) 1043, 1448
HphI GGTGA 3 cut(s) 758, 1288, 1316
Hpy166II GTNNAC 5 cut(s) 56, 829, 856, 1068, 1173
Hpy188I TCNGA 5 cut(s) 664, 730, 819, 844, 1000
Hpy8I GTNNAC 5 cut(s) 56, 829, 856, 1068, 1173
HpyAV CCTTC 5 cut(s) 10, 101, 456, 515, 1273
HpyCH4III ACNGT 2 cut(s) 121, 492
HpyCH4IV ACGT 2 cut(s) 306, 370
HpyCH4V TGCA 4 cut(s) 271, 1162, 1209, 1554
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 595, 1206, 1417, 1426
HpyF3I CTNAG 3 cut(s) 450, 902, 1580
HpySE526I ACGT 2 cut(s) 306, 370
Hsp92II CATG 4 cut(s) 683, 967, 1352, 1424
HspAI GCGC 1 cut(s) 617
Ksp22I TGATCA 2 cut(s) 328, 1345
KspAI GTTAAC 1 cut(s) 1068
Kzo9I GATC 5 cut(s) 328, 453, 922, 984, 1345
LmnI GCTCC 1 cut(s) 1408
LpnPI CCDG 9 cut(s) 21, 72, 482, 591, 620, 911, 1056, 1259, 1461
Lsp1109I GCAGC 4 cut(s) 94, 1013, 1146, 1187
LweI GCATC 2 cut(s) 1171, 1360
MaeI CTAG 2 cut(s) 1136, 1436
MaeII ACGT 2 cut(s) 306, 370
MaeIII GTNAC 3 cut(s) 227, 611, 949
MalI GATC 5 cut(s) 330, 455, 924, 986, 1347
MboI GATC 5 cut(s) 328, 453, 922, 984, 1345
MflI RGATCY 2 cut(s) 453, 984
MluCI AATT 5 cut(s) 412, 640, 715, 820, 1549
MlyI GAGTC 2 cut(s) 173, 875
MmeI TCCRAC 2 cut(s) 119, 1076
MroXI GAANNNNTTC 1 cut(s) 1508
MslI CAYNNNNRTG 2 cut(s) 513, 759
MspA1I CMGCKG 1 cut(s) 51
MspCI CTTAAG 2 cut(s) 545, 1118
MspI CCGG 2 cut(s) 1043, 1448
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 5 cut(s) 272, 595, 1206, 1417, 1426
NdeI CATATG 1 cut(s) 1087
NdeII GATC 5 cut(s) 328, 453, 922, 984, 1345
NlaIII CATG 4 cut(s) 683, 967, 1352, 1424
NmeAIII GCCGAG 1 cut(s) 1055
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 1424
NspV TTCGAA 1 cut(s) 910
PaeR7I CTCGAG 3 cut(s) 198, 1061, 1533
PagI TCATGA 1 cut(s) 1348
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 1508
PfeI GAWTC 3 cut(s) 45, 656, 1219
PflMI CCANNNNNTGG 1 cut(s) 135
PinAI ACCGGT 1 cut(s) 1042
PkrI GCNGC 4 cut(s) 109, 1028, 1161, 1202
PleI GAGTC 2 cut(s) 173, 875
PpsI GAGTC 2 cut(s) 173, 875
PpuMI RGGWCCY 1 cut(s) 1015
Psp5II RGGWCCY 1 cut(s) 1015
PspPI GGNCC 1 cut(s) 1015
PspPPI RGGWCCY 1 cut(s) 1015
PspXI VCTCGAGB 3 cut(s) 198, 1061, 1533
PsuI RGATCY 2 cut(s) 453, 984
RsaI GTAC 3 cut(s) 1255, 1472, 1612
RsaNI GTAC 3 cut(s) 1254, 1471, 1611
RseI CAYNNNNRTG 2 cut(s) 513, 759
SatI GCNGC 4 cut(s) 108, 1027, 1160, 1201
Sau3AI GATC 5 cut(s) 328, 453, 922, 984, 1345
Sau96I GGNCC 1 cut(s) 1015
SchI GAGTC 2 cut(s) 173, 875
SfaNI GCATC 2 cut(s) 1171, 1360
Sfr274I CTCGAG 3 cut(s) 198, 1061, 1533
SfuI TTCGAA 1 cut(s) 910
SinI GGWCC 1 cut(s) 1015
SlaI CTCGAG 3 cut(s) 198, 1061, 1533
SmiMI CAYNNNNRTG 2 cut(s) 513, 759
Sse9I AATT 5 cut(s) 412, 640, 715, 820, 1549
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 839
SspMI CTAG 2 cut(s) 1136, 1436
TaaI ACNGT 2 cut(s) 121, 492
TaiI ACGT 2 cut(s) 309, 373
TasI AATT 5 cut(s) 412, 640, 715, 820, 1549
TatI WGTACW 1 cut(s) 1470
TfiI GAWTC 3 cut(s) 45, 656, 1219
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 4 cut(s) 107, 1026, 1159, 1200
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 9 cut(s) 17, 684, 743, 777, 945, 1380, 1401, 1506, 1517
TspGWI ACGGA 2 cut(s) 279, 1241
TspRI CASTG 1 cut(s) 693
Van91I CCANNNNNTGG 1 cut(s) 135
Vha464I CTTAAG 2 cut(s) 545, 1118
VpaK11BI GGWCC 1 cut(s) 1015
XapI RAATTY 2 cut(s) 715, 820
XbaI TCTAGA 1 cut(s) 1135
XceI RCATGY 1 cut(s) 1424
XcmI CCANNNNNNNNNTGG 1 cut(s) 1092
XhoI CTCGAG 3 cut(s) 198, 1061, 1533
XmiI GTMKAC 1 cut(s) 1172
XmnI GAANNNNTTC 1 cut(s) 1508
XspI CTAG 2 cut(s) 1136, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.