AT3G62440

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
23096104 .. 23097726
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62440.1

Sequence Viewer

Length: 1374 bp
ATGGATCGGATCAGCAATCTTCCAGACGAGATTATCTGCCACATCGGTTCTTTCCTCTCGGCCAGGGAGGCTGCTTTCACTACTGTTCTCTCTAAGCGTTGGCATAATCTGTTTACCATCGTACCAGATCTTCATTTTGATAGTTCGGTTAAGGATGGAGAAAGTCTTACTGATTTTGTGGACAGAGTAATGGCTCTTCCAGCCAGTTCTCGAGTAAACAAATTGTCCTTGAAATGGTGGTTTGATGAAGATACTGACTCTGCTCAGTTTGATGAAGATACTGAGCCTGAAGATACAGAGCCTGCTCAGTTTGATCAAATCAACCGTTCTCTACGTGTTGTGCTCAAGCGTGGGGTCGCGGATTTTTATTTGTGGGTACATGGCAAACAAGGATATACACTGCCTTTTGAAGTTTTCACTTGTGAGACAGTTACTAAACTCTCACTAGGGTCTGGGTTTGCTATTGACTTTCTCCCTGAGAATGCCCTACTTCCAGCGCTCAAGACTCTCTCTCTTTATCACGTTAGGTTCTACGAGTTTGGTCGTTGTGCGTTCAAAACGCTTCTTGCTTCGTCTCCCGTGCTCGAGGAACTAACCGTGTGTGGTGTCAACTGGGAACTTTGGAAATGGTCCCGCACTGTTTCTAGTTCTAGCCTTAAGAGACTTACTATAATGCGTAAACAGTGGGATGCTTTTGATGATTCTGATTTTAAGAGCATTAGTTTTGATACTCCTAGTCTTGCCTACTTATATTACTCTGATTATGTTCCTAAAGAGTATCTAAGTGTTAATCTCGACTCCCTTGTTGAGACTAAGCTCTATCTTTGTCCGGAAGAAAATTATATGTGGGGTAAAGGAGATGAAAAACGATTTAATCCAATAAATCTGCTTCATGGGCTAAAAAATGTCGAGACTCTTAACTTGTACACTATCATGACTGCAGAGATGTTTTATGTCTTCCGTGAAGCACTCCCAGTGTTTCAAAAGCTGTCTCATTTATCCGTTAATCTCTCTAACTTCTGTTGGTCTTCTATGCCAATGCTGATCAAGAAAGCTCCAAATCTAAAGACTCTCAACATCGACGGTCCCTTGCACTACGAGAGTTACTATCGTTGTGCAGGCGATATTTTTTGCGAGTGCGTGTCAGAGTATTCTTTCCTAGTTTCATGTCCTCTGGAAGTCCTAAAGATAACTGAGTACTATGGTAGCTTTAGAGAATTGATGCAAATGAAACATTTCTTGGAGAAATTGTCATGTCTCGAGCTAGTGGAAGTTCATTCTCAAGCAACTGGTGAAAGAAAGCTGAAACTCATAGCAGATCTGGAAAGGCTACCCAGAGCTTCGTCCAAGTGCAAATTCGAGGTCGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

457

Amino Acids

52.74

Weight (kDa)

5.37

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 110 - 229 1.2e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 829
AciI CCGC 2 cut(s) 359, 634
AclWI GGATC 2 cut(s) 12, 17
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 1355
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 4 cut(s) 123, 378, 926, 1199
AfeI AGCGCT 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 234
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 4 cut(s) 232, 410, 556, 983
AjnI CCWGG 1 cut(s) 62
AjuI GAANNNNNNNTTGG 4 cut(s) 1223, 1255, 1340, 1372
AluBI AGCT 7 cut(s) 817, 988, 1055, 1209, 1264, 1303, 1340
AluI AGCT 7 cut(s) 817, 988, 1055, 1209, 1264, 1303, 1340
Alw21I GWGCWC 2 cut(s) 345, 585
Alw26I GTCTC 7 cut(s) 419, 579, 655, 803, 905, 996, 1262
AlwI GGATC 2 cut(s) 12, 17
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 3 cut(s) 210, 584, 1259
Aor13HI TCCGGA 1 cut(s) 829
Aor51HI AGCGCT 1 cut(s) 498
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 1355
ArsI GACNNNNNNTTYG 1 cut(s) 1347
Asp700I GAANNNNTTC 1 cut(s) 1235
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 2 cut(s) 630, 1085
AsuHPI GGTGA 1 cut(s) 1304
AvaI CYCGRG 3 cut(s) 210, 584, 1259
AvaII GGWCC 2 cut(s) 630, 1085
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BarI GAAGNNNNNNTAC 4 cut(s) 114, 146, 180, 212
BbsI GAAGAC 2 cut(s) 949, 1020
Bbv12I GWGCWC 2 cut(s) 345, 585
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 125, 149
BciT130I CCWGG 1 cut(s) 64
BclI TGATCA 2 cut(s) 313, 1044
BcoDI GTCTC 7 cut(s) 419, 579, 655, 803, 905, 996, 1262
BfaI CTAG 7 cut(s) 446, 645, 651, 735, 1160, 1265, 1372
BfmI CTRYAG 1 cut(s) 939
BfoI RGCGCY 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 656
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 127, 1318
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 1199
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 630, 1085
BmeT110I CYCGRG 3 cut(s) 210, 584, 1259
BmgT120I GGNCC 2 cut(s) 630, 1085
BmiI GGNNCC 2 cut(s) 632, 1087
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 2 cut(s) 622, 968
BmsI GCATC 2 cut(s) 679, 1212
BmuI ACTGGG 2 cut(s) 622, 968
BpiI GAAGAC 2 cut(s) 949, 1020
BpuEI CTTGAG 3 cut(s) 329, 485, 1266
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 829
BsaXI ACNNNNNCTCC 2 cut(s) 1235, 1265
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 4 cut(s) 204, 617, 974, 1294
BseAI TCCGGA 1 cut(s) 829
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 160, 694
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 5 cut(s) 273, 278, 320, 468, 1185
BseNI ACTGG 4 cut(s) 204, 617, 974, 1294
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 345, 585
BsiHKCI CYCGRG 3 cut(s) 210, 584, 1259
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 2 cut(s) 616, 1071
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 7 cut(s) 419, 579, 655, 803, 905, 996, 1262
BsmBI CGTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 616, 1071
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 3 cut(s) 210, 584, 1259
Bsp1286I GDGCHC 2 cut(s) 345, 585
Bsp13I TCCGGA 1 cut(s) 829
Bsp1407I TGTACA 1 cut(s) 924
Bsp143I GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
BspACI CCGC 2 cut(s) 359, 634
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 5 cut(s) 274, 277, 319, 469, 1186
BspEI TCCGGA 1 cut(s) 829
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 2 cut(s) 632, 1087
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 2 cut(s) 12, 17
BspQI GCTCTTC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 924
BsrI ACTGG 4 cut(s) 204, 617, 974, 1294
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 7 cut(s) 85, 326, 430, 598, 640, 684, 1085
Bst6I CTCTTC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 656
BstAUI TGTACA 1 cut(s) 924
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 303, 1120
BstDEI CTNAG 8 cut(s) 93, 264, 282, 306, 477, 782, 813, 1194
BstF5I GGATG 2 cut(s) 160, 694
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 6 cut(s) 7, 12, 130, 316, 1047, 1321
BstMAI GTCTC 7 cut(s) 419, 579, 655, 803, 905, 996, 1262
BstMBI GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 68, 200, 895
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 939
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 949, 1020
BstX2I RGATCY 2 cut(s) 127, 1318
BstYI RGATCY 2 cut(s) 127, 1318
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 160, 694
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 4 cut(s) 398, 636, 689, 981
Cac8I GCNNGC 2 cut(s) 303, 1120
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 933
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 2 cut(s) 630, 1085
Csp6I GTAC 4 cut(s) 122, 377, 925, 1198
CviAII CATG 5 cut(s) 380, 893, 934, 1167, 1254
CviQI GTAC 4 cut(s) 122, 377, 925, 1198
DdeI CTNAG 8 cut(s) 93, 264, 282, 306, 477, 782, 813, 1194
DpnI GATC 6 cut(s) 6, 11, 129, 315, 1046, 1320
DpnII GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 630, 1085
Eco47III AGCGCT 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 3 cut(s) 210, 584, 1259
EcoRII CCWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 579
FaeI CATG 5 cut(s) 383, 896, 937, 1170, 1257
FaqI GGGAC 2 cut(s) 616, 1071
FatI CATG 5 cut(s) 379, 892, 933, 1166, 1253
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 2 cut(s) 313, 1044
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 167, 701
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 7 cut(s) 446, 645, 651, 735, 1160, 1265, 1372
GlaI GCGC 1 cut(s) 498
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 830
HhaI GCGC 1 cut(s) 499
Hin1II CATG 5 cut(s) 383, 896, 937, 1170, 1257
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 6 cut(s) 257, 505, 701, 797, 913, 1069
HpaII CCGG 1 cut(s) 830
HphI GGTGA 1 cut(s) 1304
Hpy166II GTNNAC 6 cut(s) 114, 181, 217, 610, 680, 927
Hpy188I TCNGA 4 cut(s) 9, 706, 760, 1147
Hpy8I GTNNAC 6 cut(s) 114, 181, 217, 610, 680, 927
Hpy99I CGWCG 1 cut(s) 1085
HpyCH4III ACNGT 7 cut(s) 85, 326, 430, 598, 640, 684, 1085
HpyCH4IV ACGT 2 cut(s) 334, 522
HpyCH4V TGCA 5 cut(s) 941, 1093, 1118, 1225, 1353
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 200, 895
HpyF3I CTNAG 8 cut(s) 93, 264, 282, 306, 477, 782, 813, 1194
HpySE526I ACGT 2 cut(s) 334, 522
Hsp92II CATG 5 cut(s) 383, 896, 937, 1170, 1257
HspAI GCGC 1 cut(s) 497
Kpn2I TCCGGA 1 cut(s) 829
Ksp22I TGATCA 2 cut(s) 313, 1044
Kzo9I GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 1060
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 679, 1212
MaeI CTAG 7 cut(s) 446, 645, 651, 735, 1160, 1265, 1372
MaeII ACGT 2 cut(s) 334, 522
MaeIII GTNAC 2 cut(s) 430, 1103
MalI GATC 6 cut(s) 6, 11, 129, 315, 1046, 1320
MboI GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
MboII GAAGA 9 cut(s) 11, 122, 188, 260, 287, 302, 845, 949, 1020
MflI RGATCY 2 cut(s) 127, 1318
MhlI GDGCHC 2 cut(s) 345, 585
MluCI AATT 5 cut(s) 221, 838, 1217, 1247, 1355
MlyI GAGTC 5 cut(s) 251, 499, 791, 907, 1063
MnlI CCTC 5 cut(s) 61, 65, 580, 1182, 1354
MroI TCCGGA 1 cut(s) 829
MroXI GAANNNNTTC 1 cut(s) 1235
MseI TTAA 7 cut(s) 150, 657, 711, 789, 873, 918, 1005
MslI CAYNNNNRTG 1 cut(s) 932
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 68, 200, 895
NdeII GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
NlaIII CATG 5 cut(s) 383, 896, 937, 1170, 1257
NlaIV GGNNCC 2 cut(s) 632, 1087
NmeAIII GCCGAG 1 cut(s) 38
PaeR7I CTCGAG 3 cut(s) 210, 584, 1259
PagI TCATGA 1 cut(s) 933
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 1235
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 5 cut(s) 251, 499, 791, 907, 1063
PpsI GAGTC 5 cut(s) 251, 499, 791, 907, 1063
Ppu21I YACGTR 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 632, 1087
PspPI GGNCC 2 cut(s) 630, 1085
PspXI VCTCGAGB 1 cut(s) 584
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 2 cut(s) 127, 1318
RsaI GTAC 4 cut(s) 123, 378, 926, 1199
RsaNI GTAC 4 cut(s) 122, 377, 925, 1198
RseI CAYNNNNRTG 1 cut(s) 932
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 7 cut(s) 150, 657, 711, 789, 873, 918, 1005
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 6 cut(s) 4, 9, 127, 313, 1044, 1318
Sau96I GGNCC 2 cut(s) 630, 1085
ScaI AGTACT 1 cut(s) 1199
SchI GAGTC 5 cut(s) 251, 499, 791, 907, 1063
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 345, 585
SfaNI GCATC 2 cut(s) 679, 1212
SfcI CTRYAG 1 cut(s) 939
Sfr274I CTCGAG 3 cut(s) 210, 584, 1259
SinI GGWCC 2 cut(s) 630, 1085
SlaI CTCGAG 3 cut(s) 210, 584, 1259
SmiMI CAYNNNNRTG 1 cut(s) 932
SmlI CTYRAG 7 cut(s) 210, 344, 500, 584, 656, 1259, 1281
SmoI CTYRAG 7 cut(s) 210, 344, 500, 584, 656, 1259, 1281
Sse9I AATT 5 cut(s) 221, 838, 1217, 1247, 1355
SsiI CCGC 2 cut(s) 359, 634
SspMI CTAG 7 cut(s) 446, 645, 651, 735, 1160, 1265, 1372
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 7 cut(s) 85, 326, 430, 598, 640, 684, 1085
TaiI ACGT 2 cut(s) 337, 525
TaqI TCGA 7 cut(s) 211, 585, 795, 909, 1080, 1260, 1359
TasI AATT 5 cut(s) 221, 838, 1217, 1247, 1355
TatI WGTACW 2 cut(s) 924, 1197
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 7 cut(s) 150, 657, 711, 789, 873, 918, 1005
Tru9I TTAA 7 cut(s) 150, 657, 711, 789, 873, 918, 1005
TscAI CASTG 4 cut(s) 405, 643, 689, 981
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 8 cut(s) 122, 261, 288, 876, 881, 1155, 1244, 1265
TspGWI ACGGA 2 cut(s) 950, 991
TspRI CASTG 4 cut(s) 405, 643, 689, 981
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 630, 1085
XapI RAATTY 1 cut(s) 1355
XhoI CTCGAG 3 cut(s) 210, 584, 1259
XmnI GAANNNNTTC 1 cut(s) 1235
XspI CTAG 7 cut(s) 446, 645, 651, 735, 1160, 1265, 1372
ZrmI AGTACT 1 cut(s) 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.