AT3G44810

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
16358496 .. 16359983
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44810.1

Sequence Viewer

Length: 1347 bp
ATGAGTTCTGTCTCTACGGCGTCACTGAATTGTCTTCCAGATGAGCTTCTTGTCCACGTCTTGTCCTCCCTGGAAACGAAACAAGCTGCTTCAACCTCTGTTCTCTCCAAGAGGTGGAGGACTTTGTTTGCTGTCCGGCGTAATCTTGACTTTGACGATTCCATCATTTCTCACCCGGAAGTGGGTGAACAGAACATGGACGACGTTCAAGAGAGTTTCAGGGACTTTGTCGATAAAAGATTGGCTTTCCAAGGCAGTGTCCCTATCAACAAGTTCTCACTTATATATGGAGATAAACATGACGATGTTCGTGTTGATCGCTGGATAAATACCGCGCTGGAACACGGTGTCTCTGAGCTTCATTTATGCTTAACATCTGTGACTCGACGTCTACATCGTTTCCCATCCAATGTATTCAGGAGCACAACATTGGTTAAACTTACATTGGGAACAAATCTCTTCATCGTCTATTTTCCTTCTGATACGTGTCTTCCGGTTCTTAAGATTCTCGTCCTTGATTCGATTTGGTTTGATAGAATAAAGTTCTCTAATGTGCTTCTTGCTGGATGCCCTGCACTTGAGGACTTAACCATAGACCAAAAGTCTTTTCCAGGGTTGCCGAACGTTGTTTCGAGCAAAACCGTTAAGAGTCTATCCATCGTCTATAAATATTCTGCTGATTTCGATTGGTTTCGCACTGTTGCACTTGACACACCAAACCTTGTCACCCTCCTCTACTCTACCTATGCTCGGCATAGGTATCGACATTGCAATTTAGAGTCCCTTGTCAATGCTACACTGGATCTTCATTTCTTAGAAAATTGTGATGAGGCTTTTGAACCGAATGTGACGGATCTCATGATTGCGGTACGCAATGTCCAGATGCTTCATTTGACTTCTTCTGCTACTGAGGTGATTTCGCAATGCTGCAAAGGCGGGCTCCCCATGTTCAAAAACCTCCTTGTTTTAGTGTTTTTGGGTAACACTGAACGAGTTTGGAAAGTGTTTCTTCCACTTCTGCTAGAGCATTCTCCGAACCTAACAAAATTGTGTCTCGAGTCTCTCTTCTTAATACTTCAGGGTCTGTATCATGGCACAGATGAAGATGAGTTTGATGAAATTCACATTCCCCGGAGTAACAAAGTTAACATGTTGCGTATCATACAGTGTCAAGGAACTGAAAACGAGCTGAAACACATTAGCCATTTCTTACTGAAAATGGAGTGTCTTCAATTGGTGCAAGTCAATTTTTCAGAGACAATTGTTGACTCCAAAAAGGTGCAACTCACAGAGGATCTGATGAAGCTTCCCTCTGCTTCATCCAGGCTCACGATGCAAGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

51.01

Weight (kDa)

6.02

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 43 1.4e-07 F-box domain
LRR_At5g56370 PF24758 105 - 266 1.2e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 114
AccI GTMKAC 1 cut(s) 391
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 333, 866, 936
AclI AACGTT 1 cut(s) 624
AclWI GGATC 3 cut(s) 810, 861, 1302
AcsI RAATTY 1 cut(s) 1119
AcuI CTGAAG 1 cut(s) 1061
AcyI GRCGYC 2 cut(s) 20, 388
AfaI GTAC 1 cut(s) 870
AfiI CCNNNNNNNGG 4 cut(s) 114, 181, 182, 750
AflII CTTAAG 1 cut(s) 500
AflIII ACRYGT 2 cut(s) 485, 1149
AgsI TTSAA 5 cut(s) 93, 209, 839, 952, 1232
AhdI GACNNNNNGTC 2 cut(s) 387, 601
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 3 cut(s) 69, 610, 1322
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AluBI AGCT 5 cut(s) 46, 86, 358, 1189, 1306
AluI AGCT 5 cut(s) 46, 86, 358, 1189, 1306
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 5 cut(s) 16, 355, 1058, 1065, 1250
AlwI GGATC 3 cut(s) 810, 861, 1302
AlwNI CAGNNNCTG 1 cut(s) 1084
Ama87I CYCGRG 1 cut(s) 1055
ApeKI GCWGC 2 cut(s) 86, 927
ApoI RAATTY 1 cut(s) 1119
AspLEI GCGC 1 cut(s) 337
AsuC2I CCSGG 2 cut(s) 176, 1132
AsuHPI GGTGA 4 cut(s) 164, 197, 718, 925
AvaI CYCGRG 1 cut(s) 1055
BanII GRGCYC 1 cut(s) 942
BbsI GAAGAC 3 cut(s) 26, 482, 1220
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 73, 914
BccI CCATC 3 cut(s) 170, 412, 665
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 3 cut(s) 71, 612, 1324
BcnI CCSGG 2 cut(s) 176, 1132
BcoDI GTCTC 5 cut(s) 16, 355, 1058, 1065, 1250
BfaI CTAG 1 cut(s) 1022
BfrI CTTAAG 1 cut(s) 500
BisI GCNGC 2 cut(s) 87, 928
BlsI GCNGC 2 cut(s) 88, 929
Bme1390I CCNGG 5 cut(s) 71, 176, 612, 1132, 1324
BmeRI GACNNNNNGTC 2 cut(s) 387, 601
BmeT110I CYCGRG 1 cut(s) 1055
BmgBI CACGTC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 941
BmrFI CCNGG 5 cut(s) 71, 176, 612, 1132, 1324
BmsI GCATC 3 cut(s) 557, 873, 1323
BpiI GAAGAC 3 cut(s) 26, 482, 1220
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 2 cut(s) 176, 1132
BsaAI YACGTR 1 cut(s) 486
BsaHI GRCGYC 2 cut(s) 20, 388
BsaJI CCNNGG 4 cut(s) 69, 250, 611, 1130
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 181, 182, 750
Bse1I ACTGG 1 cut(s) 804
Bse3DI GCAATG 3 cut(s) 766, 880, 929
BseBI CCWGG 3 cut(s) 71, 612, 1324
BseDI CCNNGG 4 cut(s) 69, 250, 611, 1130
BseGI GGATG 3 cut(s) 404, 572, 1319
BseLI CCNNNNNNNGG 4 cut(s) 114, 181, 182, 750
BseMI GCAATG 3 cut(s) 766, 880, 929
BseMII CTCAG 2 cut(s) 345, 900
BseNI ACTGG 1 cut(s) 804
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 2 cut(s) 73, 914
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 425
BsiHKCI CYCGRG 1 cut(s) 1055
BsiSI CCGG 4 cut(s) 136, 176, 494, 1132
BslFI GGGAC 3 cut(s) 236, 245, 766
BslI CCNNNNNNNGG 4 cut(s) 114, 181, 182, 750
BsmAI GTCTC 5 cut(s) 16, 355, 1058, 1065, 1250
BsmFI GGGAC 3 cut(s) 236, 245, 766
BsmI GAATGC 1 cut(s) 1027
BsoBI CYCGRG 1 cut(s) 1055
Bsp1286I GDGCHC 2 cut(s) 425, 942
Bsp143I GATC 4 cut(s) 316, 802, 853, 1294
BspACI CCGC 3 cut(s) 333, 866, 936
BspCNI CTCAG 2 cut(s) 346, 901
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 1 cut(s) 941
BspPI GGATC 3 cut(s) 810, 861, 1302
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 3 cut(s) 766, 880, 929
BsrI ACTGG 1 cut(s) 804
BssECI CCNNGG 4 cut(s) 69, 250, 611, 1130
BssMI GATC 4 cut(s) 316, 802, 853, 1294
BssNI GRCGYC 2 cut(s) 20, 388
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 3 cut(s) 71, 612, 1324
Bst4CI ACNGT 4 cut(s) 347, 643, 700, 1167
Bst6I CTCTTC 2 cut(s) 464, 1070
BstACI GRCGYC 2 cut(s) 20, 388
BstAFI CTTAAG 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 938
BstDEI CTNAG 3 cut(s) 354, 814, 909
BstF5I GGATG 3 cut(s) 404, 572, 1319
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 4 cut(s) 319, 805, 856, 1297
BstMAI GTCTC 5 cut(s) 16, 355, 1058, 1065, 1250
BstMBI GATC 4 cut(s) 316, 802, 853, 1294
BstMWI GCNNNNNNNGC 2 cut(s) 933, 1333
BstNI CCWGG 3 cut(s) 71, 612, 1324
BstNSI RCATGY 1 cut(s) 1153
BstSCI CCNGG 5 cut(s) 69, 174, 610, 1130, 1322
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 73, 914
BstV2I GAAGAC 3 cut(s) 26, 482, 1220
BstX2I RGATCY 3 cut(s) 802, 853, 1294
BstYI RGATCY 3 cut(s) 802, 853, 1294
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 3 cut(s) 404, 572, 1319
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 6 cut(s) 23, 262, 696, 797, 984, 1172
Cac8I GCNNGC 1 cut(s) 938
CaiI CAGNNNCTG 1 cut(s) 1084
CciI TCATGA 1 cut(s) 858
CfoI GCGC 1 cut(s) 337
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 869
CviAII CATG 6 cut(s) 196, 299, 859, 946, 1091, 1150
CviQI GTAC 1 cut(s) 869
DdeI CTNAG 3 cut(s) 354, 814, 909
DpnI GATC 4 cut(s) 318, 804, 855, 1296
DpnII GATC 4 cut(s) 316, 802, 853, 1294
DriI GACNNNNNGTC 2 cut(s) 387, 601
Eam1104I CTCTTC 2 cut(s) 464, 1070
Eam1105I GACNNNNNGTC 2 cut(s) 387, 601
EarI CTCTTC 2 cut(s) 464, 1070
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 942
Eco57I CTGAAG 1 cut(s) 1061
Eco88I CYCGRG 1 cut(s) 1055
EcoRII CCWGG 3 cut(s) 69, 610, 1322
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 6 cut(s) 199, 302, 862, 949, 1094, 1153
FalI AAGNNNNNCTT 4 cut(s) 229, 261, 993, 1025
FaqI GGGAC 3 cut(s) 236, 245, 766
FatI CATG 6 cut(s) 195, 298, 858, 945, 1090, 1149
FauI CCCGC 1 cut(s) 929
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 87, 928
FokI GGATG 3 cut(s) 391, 579, 1306
FriOI GRGCYC 1 cut(s) 942
Fsp4HI GCNGC 2 cut(s) 87, 928
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 1 cut(s) 336
GluI GCNGC 2 cut(s) 87, 928
HapII CCGG 4 cut(s) 136, 176, 494, 1132
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 337
Hin1I GRCGYC 2 cut(s) 20, 388
Hin1II CATG 6 cut(s) 199, 302, 862, 949, 1094, 1153
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 2 cut(s) 1147, 1267
HindII GTYRAC 2 cut(s) 1147, 1267
HindIII AAGCTT 1 cut(s) 1304
HinfI GANTC 8 cut(s) 158, 382, 505, 518, 649, 779, 1058, 1268
HpaI GTTAAC 1 cut(s) 1147
HpaII CCGG 4 cut(s) 136, 176, 494, 1132
HphI GGTGA 4 cut(s) 164, 197, 718, 925
Hpy166II GTNNAC 5 cut(s) 55, 188, 392, 1147, 1267
Hpy188I TCNGA 5 cut(s) 355, 481, 1035, 1255, 1299
Hpy188III TCNNGA 8 cut(s) 38, 146, 209, 418, 859, 880, 1055, 1330
Hpy8I GTNNAC 5 cut(s) 55, 188, 392, 1147, 1267
Hpy99I CGWCG 2 cut(s) 206, 390
HpyAV CCTTC 1 cut(s) 486
HpyCH4III ACNGT 4 cut(s) 347, 643, 700, 1167
HpyCH4IV ACGT 5 cut(s) 57, 204, 388, 485, 624
HpyCH4V TGCA 7 cut(s) 575, 704, 771, 930, 1240, 1282, 1336
HpyF10VI GCNNNNNNNGC 2 cut(s) 933, 1333
HpyF3I CTNAG 3 cut(s) 354, 814, 909
HpySE526I ACGT 5 cut(s) 57, 204, 388, 485, 624
Hsp92I GRCGYC 2 cut(s) 20, 388
Hsp92II CATG 6 cut(s) 199, 302, 862, 949, 1094, 1153
HspAI GCGC 1 cut(s) 335
KspAI GTTAAC 1 cut(s) 1147
Kzo9I GATC 4 cut(s) 316, 802, 853, 1294
LmnI GCTCC 2 cut(s) 420, 945
Lsp1109I GCAGC 2 cut(s) 73, 914
LweI GCATC 3 cut(s) 557, 873, 1323
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 5 cut(s) 57, 204, 388, 485, 624
MaeIII GTNAC 6 cut(s) 21, 379, 724, 847, 980, 1136
MalI GATC 4 cut(s) 318, 804, 855, 1296
MboI GATC 4 cut(s) 316, 802, 853, 1294
MboII GAAGA 9 cut(s) 26, 451, 482, 797, 891, 1001, 1057, 1115, 1220
MfeI CAATTG 2 cut(s) 1232, 1260
MflI RGATCY 3 cut(s) 802, 853, 1294
MhlI GDGCHC 2 cut(s) 425, 942
MluCI AATT 8 cut(s) 28, 772, 820, 1046, 1119, 1232, 1246, 1260
MlyI GAGTC 5 cut(s) 376, 658, 788, 1067, 1262
MseI TTAA 7 cut(s) 371, 435, 501, 587, 645, 1070, 1146
MslI CAYNNNNRTG 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 4 cut(s) 136, 176, 494, 1132
MspR9I CCNGG 5 cut(s) 71, 176, 612, 1132, 1324
MunI CAATTG 2 cut(s) 1232, 1260
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 3 cut(s) 71, 612, 1324
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 933, 1333
NciI CCSGG 2 cut(s) 176, 1132
NdeII GATC 4 cut(s) 316, 802, 853, 1294
NlaIII CATG 6 cut(s) 199, 302, 862, 949, 1094, 1153
NlaIV GGNNCC 1 cut(s) 941
NmeAIII GCCGAG 1 cut(s) 730
NmuCI GTSAC 4 cut(s) 21, 379, 724, 847
NspI RCATGY 1 cut(s) 1153
PaeR7I CTCGAG 1 cut(s) 1055
PagI TCATGA 1 cut(s) 858
PciI ACATGT 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 394
PctI GAATGC 1 cut(s) 1027
PfeI GAWTC 3 cut(s) 158, 505, 518
PflFI GACNNNGTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 88, 929
PleI GAGTC 5 cut(s) 376, 657, 787, 1066, 1262
PpsI GAGTC 5 cut(s) 376, 657, 787, 1066, 1262
Ppu21I YACGTR 1 cut(s) 486
PscI ACATGT 1 cut(s) 1149
Psp1406I AACGTT 1 cut(s) 624
Psp6I CCWGG 3 cut(s) 69, 610, 1322
PspGI CCWGG 3 cut(s) 69, 610, 1322
PspN4I GGNNCC 1 cut(s) 941
PstNI CAGNNNCTG 1 cut(s) 1084
PsuI RGATCY 3 cut(s) 802, 853, 1294
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 870
RsaNI GTAC 1 cut(s) 869
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 7 cut(s) 371, 435, 501, 587, 645, 1070, 1146
SatI GCNGC 2 cut(s) 87, 928
Sau3AI GATC 4 cut(s) 316, 802, 853, 1294
SchI GAGTC 5 cut(s) 376, 658, 788, 1067, 1262
ScrFI CCNGG 5 cut(s) 71, 176, 612, 1132, 1324
SduI GDGCHC 2 cut(s) 425, 942
SfaNI GCATC 3 cut(s) 557, 873, 1323
Sfr274I CTCGAG 1 cut(s) 1055
SlaI CTCGAG 1 cut(s) 1055
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 3 cut(s) 500, 578, 1055
SmoI CTYRAG 3 cut(s) 500, 578, 1055
Sse9I AATT 8 cut(s) 28, 772, 820, 1046, 1119, 1232, 1246, 1260
SsiI CCGC 3 cut(s) 333, 866, 936
SspI AATATT 1 cut(s) 671
SspMI CTAG 1 cut(s) 1022
StyD4I CCNGG 5 cut(s) 69, 174, 610, 1130, 1322
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 4 cut(s) 347, 643, 700, 1167
TaiI ACGT 5 cut(s) 60, 207, 391, 488, 627
TaqI TCGA 7 cut(s) 231, 385, 521, 632, 684, 763, 1056
TasI AATT 8 cut(s) 28, 772, 820, 1046, 1119, 1232, 1246, 1260
TfiI GAWTC 3 cut(s) 158, 505, 518
Tru1I TTAA 7 cut(s) 371, 435, 501, 587, 645, 1070, 1146
Tru9I TTAA 7 cut(s) 371, 435, 501, 587, 645, 1070, 1146
TscAI CASTG 6 cut(s) 30, 262, 703, 804, 991, 1172
TseFI GTSAC 4 cut(s) 21, 379, 724, 847
TseI GCWGC 2 cut(s) 86, 927
Tsp45I GTSAC 4 cut(s) 21, 379, 724, 847
TspDTI ATGAA 8 cut(s) 350, 451, 797, 878, 1116, 1131, 1308, 1316
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 6 cut(s) 30, 262, 703, 804, 991, 1172
Tth111I GACNNNGTC 1 cut(s) 227
Van91I CCANNNNNTGG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 500
XapI RAATTY 1 cut(s) 1119
XceI RCATGY 1 cut(s) 1153
XhoI CTCGAG 1 cut(s) 1055
XmiI GTMKAC 1 cut(s) 391
XspI CTAG 1 cut(s) 1022
ZraI GACGTC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.