AT3G58960

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
21787146 .. 21788807
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58960.1

Sequence Viewer

Length: 1428 bp
ATGGATAGAATCAGCAGTCTATCAAATGATATCATTAGTAACATCGTATCTTTCCTTTCGGCAAAAGACGCTGCTGTCGCATCGGTTCTCTCAAAGAGGTGGCAAAATATCTATACCATCGTACCAAATCTTGAGTTTGATAACACACTTGAGAATCAAGGAAGTTTGACGGATTTCTTGAATGGTTTGCTGGCTCTTCCGGCCAGTACCCGCATAAAGAATGTCTCTATAAAACGTCGCGGGCGTGATGGACCAAATCGTGATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTGAAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCGACGGAAGATATTCACTACCTGTTGAAGTCTTCACTTGCAAGACGCTTGTTGAGCTTGAACTTGGGTCTATTTTACAAATTGATCTTGTTCCTGAGAATGCTCTTCTTCCGGCGCTTAAGACTCTCATTATTGATGCAGTTCAATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTCTGTCTTCTTGCCCTGTGCTTGTAGAGTTAAGGATGCTTAATGTGCAATGGGAGCATTGGCAATGGTCTCGCAGAGTGTCTAGTCCAACCCTAGAGAAACTTACTATGAACCACAGATATCACTTTGGTAATACTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTAACCAGCTTAAAGTACTATGATCTTCCTCCGAAATCATATCCGACGGTTAATCTCGACTCCCTTGTTGAAGCTACAATCTCTCTTACGTTGCCACTACATCACGCCTGGACCGGAAAACATGCACGTCGTGGTGATACTGTTCCAAGCGTAACCAATCTGATCAAAGGGTTAAGAAACGTTGAGACCTTGAACTTATCAAGTACTGATACTGTGGCTGCGTTTTATTTCTCCAATGAAGCAATCCCAGTATTTGAAAACTTGCATCGTTTATCTATTGCAACTGAACGTGAATTCTGTTGGCGAACTCTGCCATATCTGCTGAAGAAGTCTCCAAATCTAGAGTCTCTCGTCATTGGGGGTCCCTTGCACTACAATTATCAGTTGGGCGATGGTTATGAGTCTGAGGAGATTTATTCTGAAGATGATGATGAGGAGGAATCGGAGTCTGACGATGATGAGCCTATTTGTGAGTGCTTGTCAGATTATTCTTTCCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAAGCGAGTACAGCGGAACTAAAATAGAGTTGAAGCACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGAGCTTGTCAAAGTTTTTTCTCATGAAAGAGATGAAGAGGAACATGTTCAACTCAGAACCAATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGACCCAGTTCGAGTTTATTCCTCCTCGTAGCTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

475

Amino Acids

54.1

Weight (kDa)

5.25

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 37 3.3e-06 F-box domain
LRR_At5g56370 PF24758 98 - 236 3.8e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 211, 240, 1236
AclI AACGTT 1 cut(s) 876
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 3 cut(s) 317, 1040, 1137
AdeI CACNNNGTG 1 cut(s) 827
AfaI GTAC 5 cut(s) 123, 208, 713, 901, 1232
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 1336
AjiI CACGTC 1 cut(s) 824
AjnI CCWGG 2 cut(s) 803, 1272
AluBI AGCT 7 cut(s) 316, 397, 520, 705, 770, 1297, 1419
AluI AGCT 7 cut(s) 316, 397, 520, 705, 770, 1297, 1419
Alw26I GTCTC 5 cut(s) 229, 594, 875, 1032, 1047
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 71, 914
ApoI RAATTY 1 cut(s) 989
ArsI GACNNNNNNTTYG 2 cut(s) 1025, 1057
Asp700I GAANNNNTTC 3 cut(s) 352, 1268, 1338
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 3 cut(s) 251, 807, 1058
AsuHPI GGTGA 1 cut(s) 842
AvaII GGWCC 3 cut(s) 251, 807, 1058
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BbsI GAAGAC 3 cut(s) 364, 519, 1217
BbvI GCAGC 2 cut(s) 58, 901
BccI CCATC 3 cut(s) 125, 242, 1082
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 2 cut(s) 805, 1274
BclI TGATCA 2 cut(s) 493, 858
BcoDI GTCTC 5 cut(s) 229, 594, 875, 1032, 1047
BfaI CTAG 5 cut(s) 603, 614, 1037, 1193, 1371
BfoI RGCGCY 1 cut(s) 458
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 2 cut(s) 72, 915
BlsI GCNGC 2 cut(s) 73, 916
BmcAI AGTACT 2 cut(s) 713, 901
Bme1390I CCNGG 2 cut(s) 805, 1274
Bme18I GGWCC 3 cut(s) 251, 807, 1058
BmgBI CACGTC 1 cut(s) 824
BmgT120I GGNCC 3 cut(s) 251, 807, 1058
BmiI GGNNCC 2 cut(s) 1059, 1060
BmrFI CCNGG 2 cut(s) 805, 1274
BmrI ACTGGG 2 cut(s) 938, 1387
BmsI GCATC 5 cut(s) 89, 253, 466, 546, 970
BmuI ACTGGG 2 cut(s) 938, 1387
BpiI GAAGAC 3 cut(s) 364, 519, 1217
BpmI CTGGAG 1 cut(s) 1295
BpuEI CTTGAG 3 cut(s) 152, 170, 1313
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 2 cut(s) 594, 875
BsaWI WCCGGW 1 cut(s) 809
BsaXI ACNNNNNCTCC 2 cut(s) 1268, 1298
Bse1I ACTGG 3 cut(s) 204, 944, 1393
Bse3DI GCAATG 2 cut(s) 575, 590
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 2 cut(s) 805, 1274
BseGI GGATG 1 cut(s) 561
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 2 cut(s) 575, 590
BseMII CTCAG 3 cut(s) 426, 1092, 1360
BseNI ACTGG 3 cut(s) 204, 944, 1393
BseRI GAGGAG 3 cut(s) 1118, 1145, 1401
BseXI GCAGC 2 cut(s) 58, 901
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 3 cut(s) 200, 452, 810
BslFI GGGAC 1 cut(s) 1044
BsmAI GTCTC 5 cut(s) 229, 594, 875, 1032, 1047
BsmFI GGGAC 1 cut(s) 1044
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 2 cut(s) 594, 875
Bsp143I GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
BspACI CCGC 3 cut(s) 211, 240, 1236
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 3 cut(s) 427, 1093, 1359
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 1315
BspLI GGNNCC 2 cut(s) 1059, 1060
BspQI GCTCTTC 2 cut(s) 201, 450
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 2 cut(s) 594, 875
BsrDI GCAATG 2 cut(s) 575, 590
BsrI ACTGG 3 cut(s) 204, 944, 1393
BssMI GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
Bst2UI CCWGG 2 cut(s) 805, 1274
Bst4CI ACNGT 5 cut(s) 278, 745, 838, 910, 1216
Bst6I CTCTTC 3 cut(s) 201, 450, 1323
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 192, 242
BstDEI CTNAG 4 cut(s) 435, 1101, 1346, 1380
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 1 cut(s) 561
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 6 cut(s) 271, 427, 496, 721, 861, 1376
BstMAI GTCTC 5 cut(s) 229, 594, 875, 1032, 1047
BstMBI GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
BstMWI GCNNNNNNNGC 9 cut(s) 68, 77, 200, 394, 565, 574, 1006, 1015, 1233
BstNI CCWGG 2 cut(s) 805, 1274
BstNSI RCATGY 2 cut(s) 821, 1340
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 803, 1272
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 58, 901
BstV2I GAAGAC 3 cut(s) 364, 519, 1217
BsuRI GGCC 1 cut(s) 203
BtgZI GCGATG 1 cut(s) 1101
BtrI CACGTC 1 cut(s) 824
BtsCI GGATG 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 192, 242
CciI TCATGA 1 cut(s) 1315
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 3 cut(s) 251, 807, 1058
CseI GACGC 2 cut(s) 77, 394
Csp6I GTAC 5 cut(s) 122, 207, 712, 900, 1231
CviAII CATG 6 cut(s) 818, 1200, 1261, 1287, 1316, 1337
CviQI GTAC 5 cut(s) 122, 207, 712, 900, 1231
DdeI CTNAG 4 cut(s) 435, 1101, 1346, 1380
DpnI GATC 6 cut(s) 270, 426, 495, 720, 860, 1375
DpnII GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
DraIII CACNNNGTG 1 cut(s) 827
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 3 cut(s) 201, 450, 1323
EarI CTCTTC 3 cut(s) 201, 450, 1323
Eco31I GGTCTC 2 cut(s) 594, 875
Eco32I GATATC 2 cut(s) 31, 641
Eco47I GGWCC 3 cut(s) 251, 807, 1058
Eco57I CTGAAG 3 cut(s) 317, 1040, 1137
Eco91I GGTNACC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 1058
EcoO65I GGTNACC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 803, 1272
EcoRV GATATC 2 cut(s) 31, 641
FaeI CATG 6 cut(s) 821, 1203, 1264, 1290, 1319, 1340
FaqI GGGAC 1 cut(s) 1044
FatI CATG 6 cut(s) 817, 1199, 1260, 1286, 1315, 1336
FauI CCCGC 2 cut(s) 218, 233
FbaI TGATCA 2 cut(s) 493, 858
Fnu4HI GCNGC 2 cut(s) 72, 915
FokI GGATG 1 cut(s) 568
Fsp4HI GCNGC 2 cut(s) 72, 915
FspBI CTAG 5 cut(s) 603, 614, 1037, 1193, 1371
GlaI GCGC 1 cut(s) 456
GluI GCNGC 2 cut(s) 72, 915
GsuI CTGGAG 1 cut(s) 1295
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 1 cut(s) 203
HapII CCGG 3 cut(s) 200, 452, 810
HgaI GACGC 2 cut(s) 77, 394
HhaI GCGC 1 cut(s) 457
Hin1II CATG 6 cut(s) 821, 1203, 1264, 1290, 1319, 1340
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HindIII AAGCTT 2 cut(s) 314, 518
HpaII CCGG 3 cut(s) 200, 452, 810
HphI GGTGA 1 cut(s) 842
Hpy188III TCNNGA 9 cut(s) 131, 178, 260, 310, 434, 752, 1037, 1292, 1316
Hpy99I CGWCG 4 cut(s) 240, 347, 745, 828
HpyCH4III ACNGT 5 cut(s) 278, 745, 838, 910, 1216
HpyCH4IV ACGT 5 cut(s) 235, 785, 823, 876, 985
HpyCH4V TGCA 8 cut(s) 381, 479, 568, 821, 961, 977, 1066, 1386
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 77, 200, 394, 565, 574, 1006, 1015, 1233
HpyF3I CTNAG 4 cut(s) 435, 1101, 1346, 1380
HpySE526I ACGT 5 cut(s) 235, 785, 823, 876, 985
Hsp92II CATG 6 cut(s) 821, 1203, 1264, 1290, 1319, 1340
HspAI GCGC 1 cut(s) 455
KflI GGGWCCC 1 cut(s) 1058
Ksp22I TGATCA 2 cut(s) 493, 858
Kzo9I GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
LguI GCTCTTC 2 cut(s) 201, 450
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 2 cut(s) 58, 901
LweI GCATC 5 cut(s) 89, 253, 466, 546, 970
MaeI CTAG 5 cut(s) 603, 614, 1037, 1193, 1371
MaeII ACGT 5 cut(s) 235, 785, 823, 876, 985
MaeIII GTNAC 3 cut(s) 38, 334, 847
MalI GATC 6 cut(s) 270, 426, 495, 720, 860, 1375
MboI GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
MluCI AATT 5 cut(s) 420, 485, 989, 1072, 1280
MlyI GAGTC 7 cut(s) 457, 703, 749, 1049, 1106, 1151, 1205
MmeI TCCRAC 2 cut(s) 632, 764
MroXI GAANNNNTTC 3 cut(s) 352, 1268, 1338
MseI TTAA 7 cut(s) 318, 459, 551, 561, 707, 747, 869
MspA1I CMGCKG 1 cut(s) 1236
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 3 cut(s) 200, 452, 810
MspR9I CCNGG 2 cut(s) 805, 1274
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 805, 1274
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 9 cut(s) 68, 77, 200, 394, 565, 574, 1006, 1015, 1233
NdeII GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
NlaIII CATG 6 cut(s) 821, 1203, 1264, 1290, 1319, 1340
NlaIV GGNNCC 2 cut(s) 1059, 1060
NspI RCATGY 2 cut(s) 821, 1340
PagI TCATGA 1 cut(s) 1315
PciI ACATGT 1 cut(s) 1336
PciSI GCTCTTC 2 cut(s) 201, 450
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 3 cut(s) 352, 1268, 1338
PfeI GAWTC 4 cut(s) 9, 154, 1136, 1363
PfoI TCCNGGA 1 cut(s) 1272
PkrI GCNGC 2 cut(s) 73, 916
PleI GAGTC 7 cut(s) 457, 702, 749, 1048, 1105, 1150, 1204
PpsI GAGTC 7 cut(s) 457, 702, 749, 1048, 1105, 1150, 1204
PpuMI RGGWCCY 1 cut(s) 1058
PscI ACATGT 1 cut(s) 1336
Psp1406I AACGTT 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 803, 1272
PspEI GGTNACC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 803, 1272
PspN4I GGNNCC 2 cut(s) 1059, 1060
PspPI GGNCC 3 cut(s) 251, 807, 1058
PspPPI RGGWCCY 1 cut(s) 1058
RsaI GTAC 5 cut(s) 123, 208, 713, 901, 1232
RsaNI GTAC 5 cut(s) 122, 207, 712, 900, 1231
SapI GCTCTTC 2 cut(s) 201, 450
SaqAI TTAA 7 cut(s) 318, 459, 551, 561, 707, 747, 869
SatI GCNGC 2 cut(s) 72, 915
Sau3AI GATC 6 cut(s) 268, 424, 493, 718, 858, 1373
Sau96I GGNCC 3 cut(s) 251, 807, 1058
ScaI AGTACT 2 cut(s) 713, 901
SchI GAGTC 7 cut(s) 457, 703, 749, 1049, 1106, 1151, 1205
ScrFI CCNGG 2 cut(s) 805, 1274
SfaNI GCATC 5 cut(s) 89, 253, 466, 546, 970
SinI GGWCC 3 cut(s) 251, 807, 1058
SmlI CTYRAG 4 cut(s) 131, 149, 458, 1292
SmoI CTYRAG 4 cut(s) 131, 149, 458, 1292
Sse9I AATT 5 cut(s) 420, 485, 989, 1072, 1280
SsiI CCGC 3 cut(s) 211, 240, 1236
SspMI CTAG 5 cut(s) 603, 614, 1037, 1193, 1371
StyD4I CCNGG 2 cut(s) 803, 1272
TaaI ACNGT 5 cut(s) 278, 745, 838, 910, 1216
TaiI ACGT 5 cut(s) 238, 788, 826, 879, 988
TaqI TCGA 3 cut(s) 342, 753, 1398
TasI AATT 5 cut(s) 420, 485, 989, 1072, 1280
TatI WGTACW 3 cut(s) 711, 899, 1230
TfiI GAWTC 4 cut(s) 9, 154, 1136, 1363
Tru1I TTAA 7 cut(s) 318, 459, 551, 561, 707, 747, 869
Tru9I TTAA 7 cut(s) 318, 459, 551, 561, 707, 747, 869
TseI GCWGC 2 cut(s) 71, 914
TspDTI ATGAA 5 cut(s) 644, 948, 1277, 1332, 1341
TspGWI ACGGA 2 cut(s) 185, 360
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 251, 807, 1058
XapI RAATTY 1 cut(s) 989
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 2 cut(s) 821, 1340
XmnI GAANNNNTTC 3 cut(s) 352, 1268, 1338
XspI CTAG 5 cut(s) 603, 614, 1037, 1193, 1371
ZrmI AGTACT 2 cut(s) 713, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.