AT5G41630

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000813
Physical Location & Seq
Forward (+)
16650282 .. 16651835
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41630.1

Sequence Viewer

Length: 1368 bp
ATGTCGAAAATGAAGGATTTTGGTGGTGGTAGAGATATAATCAGTGATTTACCAGATGCACTGATAGGTCACATTTTATCATTCCTTCCAACTATAGAAGCTGTTGCCACTACTGTTCTTGCCAAAAGATGGAAGCCTTTGCTTTCGTTTGTGCACAGTCTTGACTTTGATGACTCTTTGTGTTTACATCCCGCAAAGACTAACGAAGAGAAGAGAACAAATGCTACAAGTTTTATGCGGTTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTCGAATAAACAAATTCCGCCTAAATGGTAAACATATTATCAATGAAAGATGGGTGCTGGATTGGATACAAAATGTGTTGAAACGTGATGTATCAGATATTCGTCTATACGTCTCTTCCTGTTCGGATGGTTTTGACTCGAGTTTTTATCATTTGCCTCCAGAGATTTTTGTGAGTCAAACACTAGTTACGCTAATAATAATGTTTGAAGGTGACATCAACATTAGTGTGGGAAGAGAAGTTTCTCTTCCGAAGCTCAAGACTCTCCATCTGTACCATTTCAAGATAAAATTGAGTACGTTTAACAAGCTTATTTCTGGTTGTCACGCACTCGAAGAATTGATGATGATTAATTGGAAATGGGATGAGTCTTCGGAACCTGAACCTTGCTTTGTGACCATATATCTCCCAAACCTCAAGATACTAGAGTATTGTCGTTTTGAAAGATATGATGAGGCTAACGATAAAGTCTCATTATTATTTCATAATCCAAAGGTGGTCTACCTAGAATTTTTTGATTCAATTGCGGATAGGTATCAACAAGTGAGTTTCGGTTCACTTGTTGAAGCTAGACTCGGAATTCGACTGACATATGATCAGGTCTATAACCATTTGGAAACCGAATATTATGTTTCATCCAAGGAAAAGAGTAATGTAACAAATCTTCTCACTGGAATATGCAATGTCAAGATCCTCTACTTGTCTGATGAAACTCTTGAGGTATTTGGCTGCTGCCGTGATACAATACCAGTATTCAGCAATCTCATTGAATTAACTATTCAGACTAAACCACATATAATATGGAAACCATTGCCAGCTATGCTCAACAATTGTCCAAATCTAATAACTCTTATCTTCGAAGGAATGCATCACATATATTCAGATAGATGCGAGGACGAAGACGGGTGCTTATGTAGATATCCTACTAATTTTGTGGGGGGAGTGGTTGCTCGTCCTTGCCTATCATCAAGTCCGGTCAAGGTTCTAAAGATTTTGAACTTTGGTGAAATTTGCGATGTACATGAGGACGATGAGGACGACGACGACGATGATGATGATGAAGATGAGGAATTTGTTTATTGTTTAAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

455

Amino Acids

52.31

Weight (kDa)

4.96

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 112 - 210 9.2e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 1 cut(s) 774
AciI CCGC 4 cut(s) 192, 238, 292, 800
AclWI GGATC 1 cut(s) 958
AcsI RAATTY 5 cut(s) 287, 782, 852, 1281, 1343
AfaI GTAC 3 cut(s) 548, 571, 1293
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 8 cut(s) 355, 482, 556, 716, 795, 839, 1043, 1270
AhlI ACTAGT 1 cut(s) 457
AluBI AGCT 5 cut(s) 101, 529, 583, 842, 1091
AluI AGCT 5 cut(s) 101, 529, 583, 842, 1091
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 391, 748
Alw44I GTGCAC 1 cut(s) 152
AlwI GGATC 1 cut(s) 958
Ama87I CYCGRG 1 cut(s) 412
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 1002, 1005
ApoI RAATTY 5 cut(s) 287, 782, 852, 1281, 1343
ArsI GACNNNNNNTTYG 2 cut(s) 837, 869
AseI ATTAAT 1 cut(s) 624
AsuHPI GGTGA 2 cut(s) 497, 1289
AsuII TTCGAA 1 cut(s) 1131
AvaI CYCGRG 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 156
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
BarI GAAGNNNNNNTAC 2 cut(s) 921, 953
BbsI GAAGAC 2 cut(s) 636, 1179
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 989, 992
BccI CCATC 5 cut(s) 123, 242, 318, 395, 549
BceAI ACGGC 1 cut(s) 993
BciVI GTATCC 1 cut(s) 333
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 391, 748
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 4 cut(s) 458, 698, 779, 843
BfmI CTRYAG 1 cut(s) 93
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 2 cut(s) 1003, 1006
BlsI GCNGC 2 cut(s) 1004, 1007
BmeT110I CYCGRG 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 651
BmsI GCATC 3 cut(s) 46, 1150, 1151
BpiI GAAGAC 2 cut(s) 636, 1179
BpmI CTGGAG 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 1131
BpuEI CTTGAG 3 cut(s) 515, 674, 1010
BsaBI GATNNNNATC 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 912
BsaWI WCCGGW 1 cut(s) 1246
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 949, 1022
Bse3DI GCAATG 2 cut(s) 961, 1082
Bse8I GATNNNNATC 1 cut(s) 807
BseDI CCNNGG 1 cut(s) 912
BseGI GGATG 5 cut(s) 187, 253, 406, 643, 908
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 2 cut(s) 961, 1082
BseNI ACTGG 2 cut(s) 949, 1022
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 989, 992
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 1247
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 391, 748
BsmBI CGTCTC 1 cut(s) 391
BsmI GAATGC 2 cut(s) 277, 1143
BsoBI CYCGRG 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 1131
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 1291
Bsp143I GATC 2 cut(s) 868, 963
BspACI CCGC 4 cut(s) 192, 238, 292, 800
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 1 cut(s) 958
BspT104I TTCGAA 1 cut(s) 1131
BsrDI GCAATG 2 cut(s) 961, 1082
BsrGI TGTACA 1 cut(s) 1291
BsrI ACTGG 2 cut(s) 949, 1022
BssECI CCNNGG 1 cut(s) 912
BssMI GATC 2 cut(s) 868, 963
BssT1I CCWWGG 1 cut(s) 912
Bst4CI ACNGT 2 cut(s) 115, 158
Bst6I CTCTTC 5 cut(s) 201, 206, 394, 502, 525
BstAUI TGTACA 1 cut(s) 1291
BstBI TTCGAA 1 cut(s) 1131
BstC8I GCNNGC 1 cut(s) 1089
BstF5I GGATG 5 cut(s) 187, 253, 406, 643, 908
BstKTI GATC 2 cut(s) 871, 966
BstMAI GTCTC 2 cut(s) 391, 748
BstMBI GATC 2 cut(s) 868, 963
BstMWI GCNNNNNNNGC 1 cut(s) 1093
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 989, 992
BstV2I GAAGAC 2 cut(s) 636, 1179
BstX2I RGATCY 1 cut(s) 963
BstYI RGATCY 1 cut(s) 963
BsuI GTATCC 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 1302
BtsCI GGATG 5 cut(s) 187, 253, 406, 643, 908
BtsIMutI CAGTG 3 cut(s) 49, 59, 942
Cac8I GCNNGC 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 547, 570, 1292
CviAII CATG 1 cut(s) 1295
CviJI RGCY 9 cut(s) 101, 136, 260, 529, 583, 731, 842, 1002, 1091
CviKI_1 RGCY 9 cut(s) 101, 136, 260, 529, 583, 731, 842, 1002, 1091
CviQI GTAC 3 cut(s) 547, 570, 1292
DpnI GATC 2 cut(s) 870, 965
DpnII GATC 2 cut(s) 868, 963
Eam1104I CTCTTC 5 cut(s) 201, 206, 394, 502, 525
EarI CTCTTC 5 cut(s) 201, 206, 394, 502, 525
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 912
Eco32I GATATC 1 cut(s) 1193
Eco88I CYCGRG 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 852
EcoRV GATATC 1 cut(s) 1193
EcoT14I CCWWGG 1 cut(s) 912
EcoT22I ATGCAT 1 cut(s) 1143
ErhI CCWWGG 1 cut(s) 912
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 1 cut(s) 1298
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FatI CATG 1 cut(s) 1294
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 2 cut(s) 1003, 1006
FokI GGATG 5 cut(s) 174, 260, 413, 650, 895
Fsp4HI GCNGC 2 cut(s) 1003, 1006
FspBI CTAG 4 cut(s) 458, 698, 779, 843
GluI GCNGC 2 cut(s) 1003, 1006
GsuI CTGGAG 1 cut(s) 417
HapII CCGG 1 cut(s) 1247
Hin1II CATG 1 cut(s) 1298
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 7 cut(s) 173, 410, 448, 535, 641, 791, 846
HpaII CCGG 1 cut(s) 1247
HphI GGTGA 2 cut(s) 497, 1289
Hpy166II GTNNAC 5 cut(s) 154, 185, 305, 775, 830
Hpy188I TCNGA 8 cut(s) 370, 400, 525, 649, 851, 979, 1056, 1156
Hpy188III TCNNGA 7 cut(s) 161, 434, 532, 556, 691, 961, 989
Hpy8I GTNNAC 5 cut(s) 154, 185, 305, 775, 830
Hpy99I CGWCG 3 cut(s) 1316, 1319, 1322
HpyAV CCTTC 4 cut(s) 7, 95, 476, 1127
HpyCH4III ACNGT 2 cut(s) 115, 158
HpyCH4IV ACGT 3 cut(s) 358, 384, 572
HpyCH4V TGCA 5 cut(s) 59, 154, 265, 954, 1141
HpyF10VI GCNNNNNNNGC 1 cut(s) 1093
HpySE526I ACGT 3 cut(s) 358, 384, 572
Hsp92II CATG 1 cut(s) 1298
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 2 cut(s) 868, 963
Lsp1109I GCAGC 2 cut(s) 989, 992
LweI GCATC 3 cut(s) 46, 1150, 1151
MaeI CTAG 4 cut(s) 458, 698, 779, 843
MaeII ACGT 3 cut(s) 358, 384, 572
MaeIII GTNAC 6 cut(s) 68, 460, 485, 596, 667, 928
MalI GATC 2 cut(s) 870, 965
MboI GATC 2 cut(s) 868, 963
MfeI CAATTG 2 cut(s) 795, 1102
MflI RGATCY 1 cut(s) 963
MhlI GDGCHC 1 cut(s) 156
MlyI GAGTC 6 cut(s) 167, 404, 457, 529, 650, 840
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 9 cut(s) 441, 698, 721, 977, 985, 1159, 1291, 1300, 1333
Mph1103I ATGCAT 1 cut(s) 1143
MseI TTAA 4 cut(s) 576, 624, 1046, 1358
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 1247
MunI CAATTG 2 cut(s) 795, 1102
Mva1269I GAATGC 2 cut(s) 277, 1143
MwoI GCNNNNNNNGC 1 cut(s) 1093
NdeI CATATG 1 cut(s) 865
NdeII GATC 2 cut(s) 868, 963
NlaIII CATG 1 cut(s) 1298
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 4 cut(s) 68, 485, 596, 667
NsiI ATGCAT 1 cut(s) 1143
NspV TTCGAA 1 cut(s) 1131
PaeR7I CTCGAG 1 cut(s) 412
PcsI WCGNNNNNNNCGW 2 cut(s) 1308, 1317
PctI GAATGC 2 cut(s) 277, 1143
PfeI GAWTC 1 cut(s) 791
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 2 cut(s) 1004, 1007
PleI GAGTC 6 cut(s) 167, 404, 456, 529, 649, 840
PpsI GAGTC 6 cut(s) 167, 404, 456, 529, 649, 840
PshBI ATTAAT 1 cut(s) 624
PspN4I GGNNCC 1 cut(s) 651
PspXI VCTCGAGB 1 cut(s) 412
PsrI GAACNNNNNNTAC 2 cut(s) 208, 240
PsuI RGATCY 1 cut(s) 963
RsaI GTAC 3 cut(s) 548, 571, 1293
RsaNI GTAC 3 cut(s) 547, 570, 1292
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 4 cut(s) 576, 624, 1046, 1358
SatI GCNGC 2 cut(s) 1003, 1006
Sau3AI GATC 2 cut(s) 868, 963
SchI GAGTC 6 cut(s) 167, 404, 457, 529, 650, 840
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 3 cut(s) 46, 1150, 1151
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 412
SfuI TTCGAA 1 cut(s) 1131
SlaI CTCGAG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 4 cut(s) 412, 530, 689, 989
SmoI CTYRAG 4 cut(s) 412, 530, 689, 989
SpeI ACTAGT 1 cut(s) 457
SsiI CCGC 4 cut(s) 192, 238, 292, 800
SspI AATATT 1 cut(s) 899
SspMI CTAG 4 cut(s) 458, 698, 779, 843
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 2 cut(s) 115, 158
TaiI ACGT 3 cut(s) 361, 387, 575
TaqI TCGA 6 cut(s) 5, 277, 413, 606, 856, 1131
TatI WGTACW 1 cut(s) 1291
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 4 cut(s) 576, 624, 1046, 1358
Tru9I TTAA 4 cut(s) 576, 624, 1046, 1358
TscAI CASTG 3 cut(s) 49, 66, 949
TseFI GTSAC 4 cut(s) 68, 485, 596, 667
TseI GCWGC 2 cut(s) 1002, 1005
Tsp45I GTSAC 4 cut(s) 68, 485, 596, 667
TspDTI ATGAA 6 cut(s) 26, 333, 746, 897, 996, 1347
TspRI CASTG 3 cut(s) 49, 66, 949
Van91I CCANNNNNTGG 1 cut(s) 129
VneI GTGCAC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 5 cut(s) 287, 782, 852, 1281, 1343
XcmI CCANNNNNNNNNTGG 1 cut(s) 1071
XhoI CTCGAG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 4 cut(s) 458, 698, 779, 843
Zsp2I ATGCAT 1 cut(s) 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.