AT5G41830

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000813
Physical Location & Seq
Reverse (-)
16743636 .. 16745519
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41830.1

Sequence Viewer

Length: 1392 bp
ATGCCAAACCTTGACTTTGATGAATCCTTCTATTTCGATCCTCTAATGACTTGTGAAGAGAGGAGAAAGGGTTCTGAAAGTTTTATGCTTTTCGTGGGTAGTGTATTGACTTTGCAAGCGGAAGCGAATGCTACGTTGAACAGATTCTACGTTAAGTGTGAAGGTGTTGATCAAAACTCGGTGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACATATCCCGTCATCTCGCGGTTTTGGTTCCAACTCGACTTTTTATCCTCTGCCTTCAGAGATCTTTGTGAGCAAGACATTGGTTAGGCTGAAGATACAGTTTCAGGATGGTGTCAACGTTAATGTGGAATGTGATGTTTCTCTTCCAATGCTTAAGACTCTCCATCTTGATTATGTTAAGATGGATACTAGAATGTTTCAGAAACTTCTTTCTGGCTGTCACATGCTCAAAGAATTATTGCTGATGAATTTGATATGGGAGGAGTCTTCAGAACCTGAACCTTGCTACGTAACCGTGTCTGTCCCAACTCTGAAGATACTAAAATTTTCTCGTTTTGAAAATTTTGTGAAGGCTAAAGATTTTAAACCGATCGTGTTATGGTCATTTGATATTCCAAATCTAGTCTACCTAGAGTACTTGGATACAATTGCGGACAAGTATCAACATGTGAGGTTTGACTCGCTTGTTGAAGCTCGTCTTGGTCTTTGTAAGACCTCTAAACAGATTAAAAATGACAATAATAATGTAACAAAGCTTTTCATGGGAATATGTAATGTCAAGATTCTCTACTTGACTGAAGATGCTCTCAAGGTACTTGGTTGCTGCCGTGAAACAATGCCGGTATTCGAGAATCTGATTCAGTTAACTATTAAGACTGGACTACATGTAGGATGGAAATCATTACCACCTCTACTCAAGAACTGTCCAAATCTACAAACCCTTGTCTTCGAGGGACTGAATCATATATATAGGAAAAGAAGATCTTGCGGGGACGAGAATAGGCCGTGCATGTGCAAAAATCTGGATAATATGAGGGTGAAGAAGGATATTGATGCTTGCCTATCATCAAGTTCGGTAAAGGTTATAAAGATATTGAACTTTGGTGACACTGGTGATTTTTGTCAGTTTTGGGAGATTGAAGAAGATTGTGAGTTTTGGGAAATTGTTGAAGATGTAGCGGATCACATAAAGCAGGTCAAGCAATTCCTAGAGACAATGCCGGATCTTGAACAAGTGACATTGTACTACAATACACCACAGGATGAAGATGTGATGAAAGTGTTCAAGAAACTTAAGAAGCTTCGTAGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAATCTCTGATAACCTCAACTTATCATTTACTTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

463

Amino Acids

53.58

Weight (kDa)

6.08

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 64 - 186 5.9e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 128 - 152 3.9e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1100
Acc36I ACCTGC 1 cut(s) 1198
AccI GTMKAC 1 cut(s) 639
AccII CGCG 1 cut(s) 252
AciI CCGC 5 cut(s) 119, 252, 665, 1002, 1193
AclI AACGTT 1 cut(s) 351
AclWI GGATC 3 cut(s) 32, 1203, 1245
AcsI RAATTY 3 cut(s) 481, 557, 574
AcuI CTGAAG 6 cut(s) 273, 344, 486, 566, 831, 1314
AfaI GTAC 3 cut(s) 650, 828, 1259
AflII CTTAAG 2 cut(s) 386, 1307
AflIII ACRYGT 2 cut(s) 679, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 4 cut(s) 707, 769, 1315, 1328
AluI AGCT 4 cut(s) 707, 769, 1315, 1328
Alw26I GTCTC 1 cut(s) 1220
AlwI GGATC 3 cut(s) 32, 1203, 1245
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 1016
ApeKI GCWGC 1 cut(s) 837
ApoI RAATTY 3 cut(s) 481, 557, 574
Asp700I GAANNNNTTC 3 cut(s) 70, 143, 1295
AspS9I GGNCC 1 cut(s) 1345
AsuHPI GGTGA 3 cut(s) 1063, 1130, 1139
AvaII GGWCC 1 cut(s) 1345
BarI GAAGNNNNNNTAC 2 cut(s) 1312, 1344
BbsI GAAGAC 2 cut(s) 492, 952
BbvI GCAGC 1 cut(s) 824
BccI CCATC 4 cut(s) 335, 405, 409, 900
BceAI ACGGC 2 cut(s) 825, 1003
BciVI GTATCC 3 cut(s) 186, 412, 649
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 1220
BfaI CTAG 4 cut(s) 423, 635, 644, 1223
BfrI CTTAAG 2 cut(s) 386, 1307
BfuAI ACCTGC 1 cut(s) 1198
BfuI GTATCC 3 cut(s) 186, 412, 649
BglII AGATCT 2 cut(s) 294, 995
BisI GCNGC 1 cut(s) 838
BlsI GCNGC 1 cut(s) 839
BmcAI AGTACT 1 cut(s) 650
Bme18I GGWCC 1 cut(s) 1345
BmgT120I GGNCC 1 cut(s) 1345
BmiI GGNNCC 1 cut(s) 262
BmsI GCATC 2 cut(s) 805, 1057
BpiI GAAGAC 2 cut(s) 492, 952
BpuEI CTTGAG 2 cut(s) 806, 914
BsaAI YACGTR 1 cut(s) 523
BsaBI GATNNNNATC 2 cut(s) 228, 910
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bse118I RCCGGY 1 cut(s) 853
Bse1I ACTGG 2 cut(s) 895, 1129
Bse8I GATNNNNATC 2 cut(s) 228, 910
BseGI GGATG 3 cut(s) 346, 911, 1282
BseJI GATNNNNATC 2 cut(s) 228, 910
BseNI ACTGG 2 cut(s) 895, 1129
BseRI GAGGAG 2 cut(s) 76, 509
BseXI GCAGC 1 cut(s) 824
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 1 cut(s) 1018
BsiEI CGRYCG 1 cut(s) 606
BsiSI CCGG 2 cut(s) 854, 1235
BslFI GGGAC 3 cut(s) 521, 981, 1019
BsmAI GTCTC 1 cut(s) 1220
BsmFI GGGAC 3 cut(s) 521, 981, 1019
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 1018
Bsp143I GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
BspACI CCGC 5 cut(s) 119, 252, 665, 1002, 1193
BspANI GGCC 1 cut(s) 1018
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 3 cut(s) 32, 1203, 1245
BspTI CTTAAG 2 cut(s) 386, 1307
BsrFI RCCGGY 1 cut(s) 853
BsrI ACTGG 2 cut(s) 895, 1129
BssAI RCCGGY 1 cut(s) 853
BssMI GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
Bst4CI ACNGT 3 cut(s) 333, 529, 938
Bst6I CTCTTC 2 cut(s) 51, 381
BstAFI CTTAAG 2 cut(s) 386, 1307
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 2 cut(s) 117, 1072
BstF5I GGATG 3 cut(s) 346, 911, 1282
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 8 cut(s) 40, 172, 232, 297, 606, 998, 1198, 1240
BstMAI GTCTC 1 cut(s) 1220
BstMBI GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 1 cut(s) 1213
BstNSI RCATGY 4 cut(s) 460, 683, 902, 1027
BstSNI TACGTA 1 cut(s) 523
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 824
BstV2I GAAGAC 2 cut(s) 492, 952
BstX2I RGATCY 3 cut(s) 294, 995, 1237
BstYI RGATCY 3 cut(s) 294, 995, 1237
BsuI GTATCC 3 cut(s) 186, 412, 649
BsuRI GGCC 1 cut(s) 1018
BtsCI GGATG 3 cut(s) 346, 911, 1282
BtsIMutI CAGTG 1 cut(s) 1122
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 2 cut(s) 117, 1072
CaiI CAGNNNCTG 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 1345
Csp6I GTAC 3 cut(s) 649, 827, 1258
CviAII CATG 5 cut(s) 457, 680, 775, 899, 1024
CviJI RGCY 9 cut(s) 322, 450, 587, 707, 769, 1018, 1315, 1328, 1334
CviKI_1 RGCY 9 cut(s) 322, 450, 587, 707, 769, 1018, 1315, 1328, 1334
CviQI GTAC 3 cut(s) 649, 827, 1258
DpnI GATC 8 cut(s) 39, 171, 231, 296, 605, 997, 1197, 1239
DpnII GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 51, 381
EarI CTCTTC 2 cut(s) 51, 381
Eco105I TACGTA 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 1345
Eco57I CTGAAG 6 cut(s) 273, 344, 486, 566, 831, 1314
FaeI CATG 5 cut(s) 460, 683, 778, 902, 1027
FalI AAGNNNNNCTT 4 cut(s) 696, 728, 982, 1014
FaqI GGGAC 3 cut(s) 521, 981, 1019
FatI CATG 5 cut(s) 456, 679, 774, 898, 1023
FauI CCCGC 1 cut(s) 995
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 1 cut(s) 838
FokI GGATG 3 cut(s) 353, 918, 1289
Fsp4HI GCNGC 1 cut(s) 838
FspBI CTAG 4 cut(s) 423, 635, 644, 1223
GluI GCNGC 1 cut(s) 838
HaeIII GGCC 1 cut(s) 1018
HapII CCGG 2 cut(s) 854, 1235
Hin1II CATG 5 cut(s) 460, 683, 778, 902, 1027
HincII GTYRAC 2 cut(s) 349, 879
HindII GTYRAC 2 cut(s) 349, 879
HindIII AAGCTT 2 cut(s) 767, 1313
HinfI GANTC 9 cut(s) 23, 144, 391, 497, 692, 796, 865, 871, 973
HpaI GTTAAC 1 cut(s) 879
HpaII CCGG 2 cut(s) 854, 1235
HphI GGTGA 3 cut(s) 1063, 1130, 1139
Hpy166II GTNNAC 3 cut(s) 349, 640, 879
Hpy188I TCNGA 7 cut(s) 76, 292, 435, 505, 546, 870, 1360
Hpy188III TCNNGA 8 cut(s) 338, 401, 793, 862, 931, 1037, 1241, 1300
Hpy8I GTNNAC 3 cut(s) 349, 640, 879
HpyAV CCTTC 5 cut(s) 37, 155, 297, 577, 1051
HpyCH4III ACNGT 3 cut(s) 333, 529, 938
HpyCH4IV ACGT 5 cut(s) 134, 150, 211, 351, 522
HpyCH4V TGCA 3 cut(s) 115, 1023, 1029
HpyF10VI GCNNNNNNNGC 1 cut(s) 1213
HpySE526I ACGT 5 cut(s) 134, 150, 211, 351, 522
Hsp92II CATG 5 cut(s) 460, 683, 778, 902, 1027
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 879
Kzo9I GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
Lsp1109I GCAGC 1 cut(s) 824
LweI GCATC 2 cut(s) 805, 1057
MaeI CTAG 4 cut(s) 423, 635, 644, 1223
MaeII ACGT 5 cut(s) 134, 150, 211, 351, 522
MaeIII GTNAC 5 cut(s) 452, 523, 760, 1118, 1249
MalI GATC 8 cut(s) 39, 171, 231, 296, 605, 997, 1197, 1239
MboI GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 3 cut(s) 294, 995, 1237
MluCI AATT 7 cut(s) 467, 481, 557, 574, 660, 1176, 1217
MlyI GAGTC 3 cut(s) 385, 506, 686
MmeI TCCRAC 1 cut(s) 288
MroXI GAANNNNTTC 3 cut(s) 70, 143, 1295
MseI TTAA 9 cut(s) 153, 354, 387, 411, 597, 741, 878, 885, 1308
MspCI CTTAAG 2 cut(s) 386, 1307
MspI CCGG 2 cut(s) 854, 1235
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 133
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 1213
NdeII GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
NlaIII CATG 5 cut(s) 460, 683, 778, 902, 1027
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 3 cut(s) 452, 1118, 1249
NspI RCATGY 4 cut(s) 460, 683, 902, 1027
PciI ACATGT 2 cut(s) 679, 898
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 3 cut(s) 70, 143, 1295
PfeI GAWTC 6 cut(s) 23, 144, 796, 865, 871, 973
PkrI GCNGC 1 cut(s) 839
Ple19I CGATCG 1 cut(s) 606
PleI GAGTC 3 cut(s) 385, 505, 686
PpsI GAGTC 3 cut(s) 385, 505, 686
Ppu21I YACGTR 1 cut(s) 523
PscI ACATGT 2 cut(s) 679, 898
PsiI TTATAA 1 cut(s) 1100
Psp1406I AACGTT 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 1345
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 3 cut(s) 294, 995, 1237
PvuI CGATCG 1 cut(s) 606
RsaI GTAC 3 cut(s) 650, 828, 1259
RsaNI GTAC 3 cut(s) 649, 827, 1258
SaqAI TTAA 9 cut(s) 153, 354, 387, 411, 597, 741, 878, 885, 1308
SatI GCNGC 1 cut(s) 838
Sau3AI GATC 8 cut(s) 37, 169, 229, 294, 603, 995, 1195, 1237
Sau96I GGNCC 1 cut(s) 1345
ScaI AGTACT 1 cut(s) 650
SchI GAGTC 3 cut(s) 385, 506, 686
SfaNI GCATC 2 cut(s) 805, 1057
SinI GGWCC 1 cut(s) 1345
SmlI CTYRAG 4 cut(s) 386, 821, 929, 1307
SmoI CTYRAG 4 cut(s) 386, 821, 929, 1307
SnaBI TACGTA 1 cut(s) 523
Sse9I AATT 7 cut(s) 467, 481, 557, 574, 660, 1176, 1217
SsiI CCGC 5 cut(s) 119, 252, 665, 1002, 1193
SspMI CTAG 4 cut(s) 423, 635, 644, 1223
TaaI ACNGT 3 cut(s) 333, 529, 938
TaiI ACGT 5 cut(s) 137, 153, 214, 354, 525
TaqI TCGA 4 cut(s) 36, 269, 861, 963
TasI AATT 7 cut(s) 467, 481, 557, 574, 660, 1176, 1217
TatI WGTACW 2 cut(s) 648, 1257
TfiI GAWTC 6 cut(s) 23, 144, 796, 865, 871, 973
Tru1I TTAA 9 cut(s) 153, 354, 387, 411, 597, 741, 878, 885, 1308
Tru9I TTAA 9 cut(s) 153, 354, 387, 411, 597, 741, 878, 885, 1308
TscAI CASTG 1 cut(s) 1129
TseFI GTSAC 3 cut(s) 452, 1118, 1249
TseI GCWGC 1 cut(s) 837
Tsp45I GTSAC 3 cut(s) 452, 1118, 1249
TspDTI ATGAA 5 cut(s) 36, 494, 763, 1293, 1304
TspGWI ACGGA 1 cut(s) 1376
TspRI CASTG 1 cut(s) 1129
Vha464I CTTAAG 2 cut(s) 386, 1307
VpaK11BI GGWCC 1 cut(s) 1345
XapI RAATTY 3 cut(s) 481, 557, 574
XceI RCATGY 4 cut(s) 460, 683, 902, 1027
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 3 cut(s) 70, 143, 1295
XspI CTAG 4 cut(s) 423, 635, 644, 1223
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.