AT3G59230
ERF Family

BEST Arabidopsis thaliana protein match is F-box RNI-like superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
21895948 .. 21897787
1840 bp
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UTR
Exon/CDS
Intron
AT3G59230.1

Sequence Viewer

Length: 1476 bp
ATGAATTCGAAAAAGTTGAATATTGGTCCCAAAGATATAATCAACAGTCTACCAGAAGCTCTTATTTACCACATATTGTCGTTCCTTTCAACTAAAGAAGCTGCTATAACATCGCTTCTCTCGAGAAAATGGCGGTATTTCTTTGCTTTCGTACCCAATCTTGATTTTGATGATCCGGTACGTATGCAACCTGATATGGGTAACCAAGAAGAGACTGAGATTCATACGAGTTTTATGGATTTCGTGGATAGAGTACTGGCTTTGAGGGGAAATTCCCATGTAAACAAATTCTCTTTAAAGTGTGGAAATGGTGTTGACGGTGTTGGTGTCACGCGTTGGATATTGAATACGTTGGAGCTTAGTGTATCGGAACTTGATTTAAGCATTGCATCAGATACGACTTATCTGTTTCCTTCAAAAGTATTTGTGAGCAAGTCACTGGTTAGGCTGAGAATAGAGGCTAGAAATGGTCTCGCCTTTGGAAGTCTCGTCATTGACGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTATCTTGATTCGGTTGAGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCTGGTTGTCATGTGCTTGAGGAATTAGTTATGATTGATGTGGTGTGGAATTTTTGGGAGTCTTGCTCTGCGTCTATCCCAACCCTCAAGAGACTAACGTTTTTTACCGAGGAGGGTTGGAACAACCCACCACCGAGTGTCACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCATTAAAGTATGAAAAAGTGAATTTCGATTCGCTTGTTGAAGCTAGGCTCGGTCTTCGAGTGGGATATGAAGAGTCAGAAAATCCAATACAAGTCCCTTTTGGCTTCCCCTTCCCACTTATAGAATATGCTATGGTCGGTGATGCAACTGATCTACTTATGGGAATACGCAATGTTCAGGTTCTTTACTTATATGCGAGCACTGTTGAGGTACTTACATTCCGCTGCAAAGCAATACCGATATTCAACAACCTGACTCGTTTAACCATTGAAAGTAACACAAAAGTTGGATGGGATTCATTGCCGAATCTGCTCAAGAATTGTCCAAATCTAAAAACCCTCGTCTTCCAAGGACTCCTCCACAAAGCTACGGATAGATGTGGAGACATGTGCCCGTGCAAACCTCCGGAGAATATTCATACTTGCCTATCATCAAGTCCGGTGAAGGTTCTAGAGATATTGAAGTTTGGGGAAATTAATGACAAGACAGAATTAGAGCAAACCAAGCACTTCTTGGAGTTAATGCCGCATCTTGAACAGCTCAATATATACTACGATACATCAGTTGACGATAACCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAGCAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTGTCAGTTACTTTACCCTCTTCCTCATCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

491

Amino Acids

55.16

Weight (kDa)

5.16

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 47 3.4e-06 F-box domain
LRR_At5g56370 PF24758 111 - 230 4.4e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 49, 753
AccII CGCG 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 1183
AciI CCGC 3 cut(s) 133, 1000, 1304
AclI AACGTT 1 cut(s) 686
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 6 cut(s) 4, 271, 287, 637, 799, 1383
AcuI CTGAAG 2 cut(s) 1361, 1383
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 4 cut(s) 153, 180, 255, 990
AfiI CCNNNNNNNGG 1 cut(s) 197
AflIII ACRYGT 2 cut(s) 332, 1164
AjiI CACGTC 1 cut(s) 499
AjnI CCWGG 1 cut(s) 1387
AluBI AGCT 9 cut(s) 59, 101, 358, 523, 583, 821, 1145, 1318, 1397
AluI AGCT 9 cut(s) 59, 101, 358, 523, 583, 821, 1145, 1318, 1397
Alw21I GWGCWC 1 cut(s) 980
Alw26I GTCTC 5 cut(s) 206, 476, 491, 673, 1155
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 1183
ApeKI GCWGC 2 cut(s) 101, 1002
ApoI RAATTY 6 cut(s) 4, 271, 287, 637, 799, 1383
AseI ATTAAT 1 cut(s) 1254
AspS9I GGNCC 2 cut(s) 26, 1414
AsuHPI GGTGA 3 cut(s) 929, 1231, 1429
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 2 cut(s) 26, 1414
BaeGI GKGCMC 1 cut(s) 1172
BaeI ACNNNNGTAYC 2 cut(s) 1326, 1359
BbsI GAAGAC 2 cut(s) 824, 1114
Bbv12I GWGCWC 1 cut(s) 980
BbvI GCAGC 2 cut(s) 88, 989
BccI CCATC 1 cut(s) 1062
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BciT130I CCWGG 1 cut(s) 1389
BciVI GTATCC 1 cut(s) 1375
BcoDI GTCTC 5 cut(s) 206, 476, 491, 673, 1155
BfaI CTAG 3 cut(s) 462, 822, 1229
BfuI GTATCC 1 cut(s) 1375
BisI GCNGC 3 cut(s) 102, 1003, 1304
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 3 cut(s) 103, 1004, 1305
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 1389
Bme18I GGWCC 2 cut(s) 26, 1414
BmeT110I CYCGRG 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 2 cut(s) 26, 1414
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 1389
BmsI GCATC 3 cut(s) 398, 910, 1315
BpiI GAAGAC 2 cut(s) 824, 1114
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 1 cut(s) 1410
Bpu1102I GCTNAGC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 4 cut(s) 509, 626, 659, 1076
Bsa29I ATCGAT 1 cut(s) 1469
BsaAI YACGTR 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 696, 1126
BsaWI WCCGGW 3 cut(s) 175, 1183, 1216
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 261, 444
Bse3DI GCAATG 3 cut(s) 384, 955, 1076
BseAI TCCGGA 1 cut(s) 1183
BseBI CCWGG 1 cut(s) 1389
BseCI ATCGAT 1 cut(s) 1469
BseDI CCNNGG 2 cut(s) 696, 1126
BseGI GGATG 1 cut(s) 1073
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 3 cut(s) 384, 955, 1076
BseMII CTCAG 2 cut(s) 207, 440
BseNI ACTGG 2 cut(s) 261, 444
BseRI GAGGAG 2 cut(s) 713, 1124
BseSI GKGCMC 1 cut(s) 1172
BseXI GCAGC 2 cut(s) 88, 989
Bsh1236I CGCG 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 1469
BsiHKAI GWGCWC 1 cut(s) 980
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 4 cut(s) 176, 743, 1184, 1217
BslFI GGGAC 2 cut(s) 12, 857
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 5 cut(s) 206, 476, 491, 673, 1155
BsmFI GGGAC 2 cut(s) 12, 857
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 980, 1172
Bsp13I TCCGGA 1 cut(s) 1183
Bsp143I GATC 2 cut(s) 172, 928
Bsp1720I GCTNAGC 1 cut(s) 579
BspACI CCGC 3 cut(s) 133, 1000, 1304
BspCNI CTCAG 2 cut(s) 208, 441
BspDI ATCGAT 1 cut(s) 1469
BspEI TCCGGA 1 cut(s) 1183
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 3 cut(s) 384, 955, 1076
BsrI ACTGG 2 cut(s) 261, 444
BssECI CCNNGG 2 cut(s) 696, 1126
BssMI GATC 2 cut(s) 172, 928
BssT1I CCWWGG 1 cut(s) 1126
Bst2UI CCWGG 1 cut(s) 1389
Bst4CI ACNGT 4 cut(s) 47, 320, 775, 982
Bst6I CTCTTC 3 cut(s) 204, 843, 1465
BstBAI YACGTR 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 976
BstDEI CTNAG 4 cut(s) 216, 359, 449, 579
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 1073
BstFNI CGCG 1 cut(s) 334
BstKTI GATC 2 cut(s) 175, 931
BstMAI GTCTC 5 cut(s) 206, 476, 491, 673, 1155
BstMBI GATC 2 cut(s) 172, 928
BstMWI GCNNNNNNNGC 2 cut(s) 1087, 1282
BstNI CCWGG 1 cut(s) 1389
BstNSI RCATGY 1 cut(s) 1168
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 1387
BstSLI GKGCMC 1 cut(s) 1172
BstSNI TACGTA 1 cut(s) 182
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 88, 989
BstV2I GAAGAC 2 cut(s) 824, 1114
Bsu15I ATCGAT 1 cut(s) 1469
BsuI GTATCC 1 cut(s) 1375
BsuTUI ATCGAT 1 cut(s) 1469
BtgZI GCGATG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 1 cut(s) 1073
BtsIMutI CAGTG 2 cut(s) 437, 978
Cac8I GCNNGC 1 cut(s) 976
Cfr13I GGNCC 2 cut(s) 26, 1414
ClaI ATCGAT 1 cut(s) 1469
CseI GACGC 1 cut(s) 648
Csp6I GTAC 4 cut(s) 152, 179, 254, 989
CviAII CATG 3 cut(s) 278, 599, 1165
CviQI GTAC 4 cut(s) 152, 179, 254, 989
DdeI CTNAG 4 cut(s) 216, 359, 449, 579
DpnI GATC 2 cut(s) 174, 930
DpnII GATC 2 cut(s) 172, 928
DraI TTTAAA 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 725
Eam1104I CTCTTC 3 cut(s) 204, 843, 1465
EarI CTCTTC 3 cut(s) 204, 843, 1465
Eco105I TACGTA 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 1126
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 26, 1414
Eco57I CTGAAG 2 cut(s) 1361, 1383
Eco88I CYCGRG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 1387
EcoT14I CCWWGG 1 cut(s) 1126
ErhI CCWWGG 1 cut(s) 1126
FaeI CATG 3 cut(s) 281, 602, 1168
FalI AAGNNNNNCTT 2 cut(s) 1274, 1306
FaqI GGGAC 2 cut(s) 12, 857
FatI CATG 3 cut(s) 277, 598, 1164
FblI GTMKAC 2 cut(s) 49, 753
Fnu4HI GCNGC 3 cut(s) 102, 1003, 1304
FokI GGATG 1 cut(s) 1080
Fsp4HI GCNGC 3 cut(s) 102, 1003, 1304
FspBI CTAG 3 cut(s) 462, 822, 1229
GluI GCNGC 3 cut(s) 102, 1003, 1304
GsuI CTGGAG 1 cut(s) 1410
HapII CCGG 4 cut(s) 176, 743, 1184, 1217
HgaI GACGC 1 cut(s) 648
Hin1II CATG 3 cut(s) 281, 602, 1168
HincII GTYRAC 2 cut(s) 316, 1345
HindII GTYRAC 2 cut(s) 316, 1345
HindIII AAGCTT 1 cut(s) 581
HpaII CCGG 4 cut(s) 176, 743, 1184, 1217
HphI GGTGA 3 cut(s) 929, 1231, 1429
Hpy166II GTNNAC 5 cut(s) 50, 283, 316, 754, 1345
Hpy188I TCNGA 4 cut(s) 370, 394, 856, 1429
Hpy8I GTNNAC 5 cut(s) 50, 283, 316, 754, 1345
HpyAV CCTTC 4 cut(s) 423, 524, 898, 1216
HpyCH4III ACNGT 4 cut(s) 47, 320, 775, 982
HpyCH4IV ACGT 4 cut(s) 181, 350, 498, 686
HpyCH4V TGCA 7 cut(s) 187, 389, 779, 923, 1005, 1176, 1410
HpyF10VI GCNNNNNNNGC 2 cut(s) 1087, 1282
HpyF3I CTNAG 4 cut(s) 216, 359, 449, 579
HpySE526I ACGT 4 cut(s) 181, 350, 498, 686
Hsp92II CATG 3 cut(s) 281, 602, 1168
Kpn2I TCCGGA 1 cut(s) 1183
Kzo9I GATC 2 cut(s) 172, 928
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 88, 989
LweI GCATC 3 cut(s) 398, 910, 1315
MaeI CTAG 3 cut(s) 462, 822, 1229
MaeII ACGT 4 cut(s) 181, 350, 498, 686
MaeIII GTNAC 6 cut(s) 200, 328, 435, 727, 1052, 1447
MalI GATC 2 cut(s) 174, 930
MboI GATC 2 cut(s) 172, 928
MboII GAAGA 5 cut(s) 221, 824, 860, 1114, 1452
MhlI GDGCHC 2 cut(s) 980, 1172
MluI ACGCGT 1 cut(s) 332
MlyI GAGTC 5 cut(s) 523, 656, 860, 1027, 1125
MmeI TCCRAC 4 cut(s) 317, 333, 686, 1045
MroI TCCGGA 1 cut(s) 1183
MseI TTAA 8 cut(s) 296, 380, 782, 1040, 1254, 1298, 1359, 1474
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 1002
MspI CCGG 4 cut(s) 176, 743, 1184, 1217
MspR9I CCNGG 1 cut(s) 1389
MvaI CCWGG 1 cut(s) 1389
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 1087, 1282
NdeII GATC 2 cut(s) 172, 928
NlaIII CATG 3 cut(s) 281, 602, 1168
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 328, 435, 727
NspI RCATGY 1 cut(s) 1168
NspV TTCGAA 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 121
PciI ACATGT 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 2 cut(s) 119, 495
PfeI GAWTC 5 cut(s) 220, 542, 806, 1073, 1084
PfoI TCCNGGA 1 cut(s) 1387
PkrI GCNGC 3 cut(s) 103, 1004, 1305
PleI GAGTC 5 cut(s) 523, 655, 859, 1027, 1125
PpsI GAGTC 5 cut(s) 523, 655, 859, 1027, 1125
Ppu21I YACGTR 1 cut(s) 182
PscI ACATGT 1 cut(s) 1164
PshBI ATTAAT 1 cut(s) 1254
Psp1406I AACGTT 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 1387
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 1387
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 26, 1414
RsaI GTAC 4 cut(s) 153, 180, 255, 990
RsaNI GTAC 4 cut(s) 152, 179, 254, 989
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 8 cut(s) 296, 380, 782, 1040, 1254, 1298, 1359, 1474
SatI GCNGC 3 cut(s) 102, 1003, 1304
Sau3AI GATC 2 cut(s) 172, 928
Sau96I GGNCC 2 cut(s) 26, 1414
ScaI AGTACT 1 cut(s) 255
SchI GAGTC 5 cut(s) 523, 656, 860, 1027, 1125
ScrFI CCNGG 1 cut(s) 1389
SduI GDGCHC 2 cut(s) 980, 1172
SfaNI GCATC 3 cut(s) 398, 910, 1315
Sfr274I CTCGAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 26, 1414
SlaI CTCGAG 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 5 cut(s) 121, 524, 605, 674, 1091
SmoI CTYRAG 5 cut(s) 121, 524, 605, 674, 1091
SnaBI TACGTA 1 cut(s) 182
SsiI CCGC 3 cut(s) 133, 1000, 1304
SspI AATATT 2 cut(s) 22, 1192
SspMI CTAG 3 cut(s) 462, 822, 1229
StyD4I CCNGG 1 cut(s) 1387
StyI CCWWGG 1 cut(s) 1126
TaaI ACNGT 4 cut(s) 47, 320, 775, 982
TaiI ACGT 4 cut(s) 184, 353, 501, 689
TaqI TCGA 5 cut(s) 8, 122, 804, 835, 1469
TaqII GACCGA 1 cut(s) 818
TatI WGTACW 1 cut(s) 253
TauI GCSGC 1 cut(s) 1306
TfiI GAWTC 5 cut(s) 220, 542, 806, 1073, 1084
Tru1I TTAA 8 cut(s) 296, 380, 782, 1040, 1254, 1298, 1359, 1474
Tru9I TTAA 8 cut(s) 296, 380, 782, 1040, 1254, 1298, 1359, 1474
TscAI CASTG 2 cut(s) 444, 985
TseFI GTSAC 3 cut(s) 328, 435, 727
TseI GCWGC 2 cut(s) 101, 1002
Tsp45I GTSAC 3 cut(s) 328, 435, 727
TspDTI ATGAA 6 cut(s) 17, 212, 804, 861, 1065, 1184
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 2 cut(s) 444, 985
VpaK11BI GGWCC 2 cut(s) 26, 1414
VspI ATTAAT 1 cut(s) 1254
XapI RAATTY 6 cut(s) 4, 271, 287, 637, 799, 1383
XbaI TCTAGA 1 cut(s) 1228
XceI RCATGY 1 cut(s) 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1288
XhoI CTCGAG 1 cut(s) 121
XmiI GTMKAC 2 cut(s) 49, 753
XspI CTAG 3 cut(s) 462, 822, 1229
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.