AT3G44080

F-box LRR-repeat protein At2g29930-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Reverse (-)
15835632 .. 15837126
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44080.1

Sequence Viewer

Length: 1164 bp
ATGGAACAGTTGAATCCGGCTTCAATGGATTGTCTTCCTGATGAACTTCTTGTCGAAATCTTATCCTCCCTTACCACGAAACAAGCAGTTTCAACCTCTCTTCTCTCAAAGAGGTGGAAGACTCTATATTCTCTCGTGCATAATCTTGACATTGACGACTACATCCTTTTCCACCGGGAAGACGGTTATCATCGGTATAGGCCTGACATTCAAAAGAGTTTCGAGGATTTCGTAGAGAGGACATTGGCTTTCCGTGGCCATATAAAGACGTTCTCACTAAAAAGTAGAGAATTATATGCATTTGGACTTGGCGTGGATGTTGTTAACCGCTGGATTTGTAATGCCCTGGAACGCGGTGTCTCTGAGCTACATCTATGCATAAATTCGCAGTTTGAATTACCTTACAAATTCTTCACTAGCACCACACTGGTTATGCTGTCATTGGGAAGAGGACTAGTGTGCTCAAAAATTCCTCCGGAGACATCTCTCCCAGTACTTAAGATTCTCTTCCTTTATTCAATCTGGTTTAAGGACTTGACACGCCATGTTGTCGACCTCTACTACTCTGATCTTCCTAGGCGTAAAGCTCCACATTGTCATTTAGATTCACTTGCCAAAGTTACGTTGGACCTTCATTACTTAAGATATGGCTATCAAAAGGTGCAAAATTATGCGAATGTGAAAAATATCATCAGTGAGATACGCAACGTTAAGACCCTTCACTTAACTTCTTCCGCTGTCGAGGTTATTTCGGTATGCCGCAAAGATGGACTACCGGTGTTCAACAACCTTGTTGAATTAATGTTTTCGAGTCGAAAACGACATCGGAAAGTGCTTCCGCTTCTACTAGAGCGTTCTCCAAACCTAGAAACTCTAATTCTTTCGGATCTGTATCGTTACACATATGGTCGAAGACATCGATTTGTAGGGATTCAAATTCCCGCGAATAACAAAATAAAGATGCTGAGTTTCATGCAATATCAAGGAAGTGCAACCGAGCTGAAACACATAAGCCATTTGTTACTGAAAATGGAGTGTCTTGAAGTGGTGAAAGTTTATCTTGCAACTGAAATGAATGACCTTAAAAAGATGCAACTCACTGAGGATGAGGTGAAGCTTCCCGCAGCTTCATCTAAGGTCAAGATACAAGTCATGGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

387

Amino Acids

44.85

Weight (kDa)

9.22

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 42 1.1e-07 F-box domain
F-box-like PF12937 10 - 42 4.8e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 552
AccII CGCG 2 cut(s) 354, 944
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 7 cut(s) 328, 354, 735, 760, 839, 942, 1122
AclI AACGTT 1 cut(s) 708
AclWI GGATC 1 cut(s) 894
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 4 cut(s) 382, 407, 468, 936
AfaI GTAC 1 cut(s) 495
AflII CTTAAG 2 cut(s) 497, 640
AgeI ACCGGT 1 cut(s) 775
AhlI ACTAGT 1 cut(s) 454
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 5 cut(s) 367, 587, 1000, 1117, 1127
AluI AGCT 5 cut(s) 367, 587, 1000, 1117, 1127
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 364, 473
AlwI GGATC 1 cut(s) 894
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 2 cut(s) 200, 256
ApeKI GCWGC 1 cut(s) 1124
ApoI RAATTY 4 cut(s) 382, 407, 468, 936
AseI ATTAAT 1 cut(s) 800
AsiGI ACCGGT 1 cut(s) 775
AspA2I CCTAGG 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 628
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 1060, 1123
AvaII GGWCC 1 cut(s) 628
AvrII CCTAGG 1 cut(s) 575
BalI TGGCCA 1 cut(s) 258
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 4 cut(s) 26, 125, 186, 919
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 1136
BccI CCATC 1 cut(s) 761
BciT130I CCWGG 1 cut(s) 347
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 364, 473
BcuI ACTAGT 1 cut(s) 454
BfaI CTAG 5 cut(s) 417, 455, 576, 848, 866
BfrI CTTAAG 2 cut(s) 497, 640
BisI GCNGC 2 cut(s) 760, 1125
BlnI CCTAGG 1 cut(s) 575
BlsI GCNGC 2 cut(s) 761, 1126
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 176, 347
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmrFI CCNGG 2 cut(s) 176, 347
BmrI ACTGGG 1 cut(s) 485
BmsI GCATC 2 cut(s) 951, 1080
BmuI ACTGGG 1 cut(s) 485
BpiI GAAGAC 4 cut(s) 26, 125, 186, 919
BpuMI CCSGG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 919
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 3 cut(s) 253, 345, 575
BsaWI WCCGGW 2 cut(s) 475, 775
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 432, 491
Bse8I GATNNNNATC 1 cut(s) 891
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 919
BseDI CCNNGG 3 cut(s) 253, 345, 575
BseGI GGATG 3 cut(s) 162, 322, 1111
BseJI GATNNNNATC 1 cut(s) 891
BseMII CTCAG 3 cut(s) 354, 956, 1092
BseNI ACTGG 2 cut(s) 432, 491
BseXI GCAGC 1 cut(s) 1136
Bsh1236I CGCG 2 cut(s) 354, 944
BshFI GGCC 2 cut(s) 202, 258
BshTI ACCGGT 1 cut(s) 775
BshVI ATCGAT 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 4 cut(s) 17, 175, 476, 776
BsmAI GTCTC 2 cut(s) 364, 473
BsnI GGCC 2 cut(s) 202, 258
Bsp1286I GDGCHC 1 cut(s) 464
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 3 cut(s) 568, 886, 1157
BspACI CCGC 7 cut(s) 328, 354, 735, 760, 839, 942, 1122
BspANI GGCC 2 cut(s) 202, 258
BspCNI CTCAG 3 cut(s) 355, 957, 1093
BspDI ATCGAT 1 cut(s) 919
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 2 cut(s) 354, 944
BspPI GGATC 1 cut(s) 894
BspTI CTTAAG 2 cut(s) 497, 640
BsrFI RCCGGY 1 cut(s) 775
BsrI ACTGG 2 cut(s) 432, 491
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 3 cut(s) 253, 345, 575
BssMI GATC 3 cut(s) 568, 886, 1157
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 575
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 9, 185
Bst6I CTCTTC 3 cut(s) 105, 442, 512
BstAFI CTTAAG 2 cut(s) 497, 640
BstDEI CTNAG 4 cut(s) 363, 965, 1101, 1134
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 3 cut(s) 162, 322, 1111
BstFNI CGCG 2 cut(s) 354, 944
BstKTI GATC 3 cut(s) 571, 889, 1160
BstMAI GTCTC 2 cut(s) 364, 473
BstMBI GATC 3 cut(s) 568, 886, 1157
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 174, 345
BstUI CGCG 2 cut(s) 354, 944
BstV1I GCAGC 1 cut(s) 1136
BstV2I GAAGAC 4 cut(s) 26, 125, 186, 919
BstX2I RGATCY 1 cut(s) 886
BstYI RGATCY 1 cut(s) 886
Bsu15I ATCGAT 1 cut(s) 919
BsuRI GGCC 2 cut(s) 202, 258
BsuTUI ATCGAT 1 cut(s) 919
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 3 cut(s) 162, 322, 1111
BtsIMutI CAGTG 3 cut(s) 425, 700, 1098
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 1 cut(s) 628
ClaI ATCGAT 1 cut(s) 919
Csp6I GTAC 1 cut(s) 494
CspAI ACCGGT 1 cut(s) 775
CviAII CATG 3 cut(s) 545, 973, 1153
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 4 cut(s) 363, 965, 1101, 1134
DpnI GATC 3 cut(s) 570, 888, 1159
DpnII GATC 3 cut(s) 568, 886, 1157
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 105, 442, 512
EarI CTCTTC 3 cut(s) 105, 442, 512
Eco130I CCWWGG 1 cut(s) 575
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 575
EcoT22I ATGCAT 2 cut(s) 301, 380
ErhI CCWWGG 1 cut(s) 575
FaeI CATG 3 cut(s) 548, 976, 1156
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 1044, 1076
FatI CATG 3 cut(s) 544, 972, 1152
FauI CCCGC 2 cut(s) 949, 1129
FauNDI CATATG 1 cut(s) 904
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 760, 1125
FokI GGATG 3 cut(s) 149, 329, 1118
Fsp4HI GCNGC 2 cut(s) 760, 1125
FspBI CTAG 5 cut(s) 417, 455, 576, 848, 866
GluI GCNGC 2 cut(s) 760, 1125
HaeIII GGCC 2 cut(s) 202, 258
HapII CCGG 4 cut(s) 17, 175, 476, 776
Hin1II CATG 3 cut(s) 548, 976, 1156
HincII GTYRAC 2 cut(s) 325, 553
HindII GTYRAC 2 cut(s) 325, 553
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 6 cut(s) 13, 121, 502, 605, 811, 931
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 4 cut(s) 17, 175, 476, 776
HphI GGTGA 2 cut(s) 1060, 1123
Hpy166II GTNNAC 2 cut(s) 325, 553
Hpy188I TCNGA 4 cut(s) 364, 568, 828, 886
Hpy188III TCNNGA 5 cut(s) 38, 146, 476, 1040, 1141
Hpy8I GTNNAC 2 cut(s) 325, 553
HpyAV CCTTC 2 cut(s) 641, 728
HpyCH4III ACNGT 2 cut(s) 9, 185
HpyCH4IV ACGT 3 cut(s) 269, 623, 708
HpyCH4V TGCA 8 cut(s) 139, 299, 378, 664, 976, 992, 1064, 1093
HpyF3I CTNAG 4 cut(s) 363, 965, 1101, 1134
HpySE526I ACGT 3 cut(s) 269, 623, 708
Hsp92II CATG 3 cut(s) 548, 976, 1156
Kpn2I TCCGGA 1 cut(s) 475
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 568, 886, 1157
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 1 cut(s) 1136
LweI GCATC 2 cut(s) 951, 1080
MaeI CTAG 5 cut(s) 417, 455, 576, 848, 866
MaeII ACGT 3 cut(s) 269, 623, 708
MaeIII GTNAC 3 cut(s) 619, 896, 1020
MalI GATC 3 cut(s) 570, 888, 1159
MboI GATC 3 cut(s) 568, 886, 1157
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 9 cut(s) 290, 382, 395, 407, 468, 667, 797, 876, 936
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 2 cut(s) 115, 820
MmeI TCCRAC 1 cut(s) 606
Mox20I TGGCCA 1 cut(s) 258
Mph1103I ATGCAT 2 cut(s) 301, 380
MroI TCCGGA 1 cut(s) 475
MscI TGGCCA 1 cut(s) 258
MseI TTAA 8 cut(s) 324, 498, 528, 641, 711, 725, 800, 1083
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 330, 737
MspCI CTTAAG 2 cut(s) 497, 640
MspI CCGG 4 cut(s) 17, 175, 476, 776
MspR9I CCNGG 2 cut(s) 176, 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 2 cut(s) 354, 944
NciI CCSGG 1 cut(s) 176
NdeI CATATG 1 cut(s) 904
NdeII GATC 3 cut(s) 568, 886, 1157
NlaIII CATG 3 cut(s) 548, 976, 1156
NsiI ATGCAT 2 cut(s) 301, 380
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 916
PfeI GAWTC 4 cut(s) 13, 502, 605, 931
PinAI ACCGGT 1 cut(s) 775
PkrI GCNGC 2 cut(s) 761, 1126
PleI GAGTC 2 cut(s) 115, 819
PpsI GAGTC 2 cut(s) 115, 819
PshBI ATTAAT 1 cut(s) 800
Psp1406I AACGTT 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspPI GGNCC 1 cut(s) 628
PsuI RGATCY 1 cut(s) 886
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SalI GTCGAC 1 cut(s) 551
SaqAI TTAA 8 cut(s) 324, 498, 528, 641, 711, 725, 800, 1083
SatI GCNGC 2 cut(s) 760, 1125
Sau3AI GATC 3 cut(s) 568, 886, 1157
Sau96I GGNCC 1 cut(s) 628
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 2 cut(s) 115, 820
ScrFI CCNGG 2 cut(s) 176, 347
SduI GDGCHC 1 cut(s) 464
SfaNI GCATC 2 cut(s) 951, 1080
SinI GGWCC 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 497, 640
SmoI CTYRAG 2 cut(s) 497, 640
SpeI ACTAGT 1 cut(s) 454
Sse9I AATT 9 cut(s) 290, 382, 395, 407, 468, 667, 797, 876, 936
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 7 cut(s) 328, 354, 735, 760, 839, 942, 1122
SspMI CTAG 5 cut(s) 417, 455, 576, 848, 866
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 174, 345
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 2 cut(s) 9, 185
TaiI ACGT 3 cut(s) 272, 626, 711
TaqI TCGA 8 cut(s) 54, 222, 552, 741, 809, 814, 910, 919
TasI AATT 9 cut(s) 290, 382, 395, 407, 468, 667, 797, 876, 936
TatI WGTACW 1 cut(s) 493
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 4 cut(s) 13, 502, 605, 931
Tru1I TTAA 8 cut(s) 324, 498, 528, 641, 711, 725, 800, 1083
Tru9I TTAA 8 cut(s) 324, 498, 528, 641, 711, 725, 800, 1083
TscAI CASTG 3 cut(s) 432, 700, 1105
TseI GCWGC 1 cut(s) 1124
TspDTI ATGAA 5 cut(s) 57, 623, 961, 1088, 1119
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 3 cut(s) 432, 700, 1105
Vha464I CTTAAG 2 cut(s) 497, 640
VpaK11BI GGWCC 1 cut(s) 628
VspI ATTAAT 1 cut(s) 800
XapI RAATTY 4 cut(s) 382, 407, 468, 936
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmaJI CCTAGG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 552
XspI CTAG 5 cut(s) 417, 455, 576, 848, 866
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 2 cut(s) 301, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.