AT4G00320

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
139939 .. 141643
1705 bp
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UTR
Exon/CDS
Intron
AT4G00320.1

Sequence Viewer

Length: 1524 bp
ATGGGTTCGAAAAAGAAGTGTTTTGATGGTTCTAGAGATGGAATCAGCGGTTTACCAGACGCAATGATTTGTCACATATTATCATTTCTTCCAACTAAAGTAGCTGCTTCAACTACCGTTCTTGCCAAAAGATGGAAGCCTTTGCTTGCTTTTATGCCAAACCTTGACTTTGATGAATCCTTCCGTTTCGATCCTCGAATGACTTGTGAAGAGAGGAGAAAGGGTTCTGAAAGTTTTATGCTTGTCGTGGATAGTGTATTGGCTTTGCAAGCGGAAGCGAATGCTACGTTGAACAAATTCTACGTTAAGTGTGAAGGTGTTGAGCAAAACTCGGTGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACAGATCCCTTCGTCTCGCGGTTTTGGTTCCAACTCGACTTTTTATCCTCTACCTTCAGAGATCTTTGTGAGCAAGACATTGGTTAGACTAAAGATACAGTTTCAGGATGGTGCCAACGTTAATGTGGAAGGTGATGTTTCTCTTCCGATGCTTAAGACTCTCCATCTTGATTATGTTAAGATGGATACCAGAATGTTACAGAAGCTTCTTTCTGGCTGTCACACGCTCGAAGAATTATTGCTGATGAATTTGATATGGAAAGAATCTTCAGAACCTGAACCTTGCTTTGTGAGTGTTTCTGTCCGAACCCTCAAGATACTAAAATTTTCTCGTTTTGAAAATTTTATGAAGGCTAAAGATTTTAAACCGATCGTGTTATTGTCATTTGATATTCCAAATCTAGTCTACTTAGAGTACTTGGATACAATTGCGGACAAGTATGAACAAGTGAGGTTTGACTCGCTTGTTAAAGCTAGTATTGGTCTTTGTAAGACCTCTAAACAGATTGAAAATGACAATAATAATGTAACAAAGCTTTTCATGGGAATATGCAATGTCACGATTCTCTACTTGACTGAAGATACTCTTAAGGTACTTGGTTGCTGCCGTGAAACAATGCCGGTATTCGAGAACTTAATTCACTTAACTATTAGGACTGGAGTACATATAGGATGGAAATCATTACCACATCTACTCAAGAATTGTCCAAATCTACAAACTCTTGTCTTCGAGGGAATGCATCATATATATAGGAAAGGAAGAGCTTGCGGGGACGTGGACGAGGATGGGACGTGCATGTGCAAAAATCTGGATAATATGAGGGTGAAGAAGGATATTGATGCTTGTCTATCGTCAAGTCCGGTGAAGGTCATAAAGATATTGAACTTTGGTGAACTTTGTGGGTTTTGTGAGTTTTGTGATGTTGAAGAAGATGTAGCGGGTCAGATAAAGCAGGTCAAGCAATTCCTAGAGACAATGCCGGATCTTGAAAAAGTGATATTGTACTACAATACACCAGAGGATGAAGATGTGATGAAGGTGTTCAAGAAACTTAAGAAGCTTCCTAGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAATCTCTGATAACATCAACTTGTCATTTACTTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

507

Amino Acids

57.61

Weight (kDa)

7.03

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 115 - 237 2.3e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 179 - 203 5.4e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1330
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 1 cut(s) 792
AccII CGCG 1 cut(s) 405
AciI CCGC 6 cut(s) 48, 272, 405, 818, 1155, 1325
AclI AACGTT 1 cut(s) 504
AclWI GGATC 3 cut(s) 185, 385, 1377
AcsI RAATTY 4 cut(s) 296, 634, 710, 727
AcuI CTGAAG 4 cut(s) 426, 639, 984, 1446
AfaI GTAC 4 cut(s) 803, 981, 1050, 1391
AfiI CCNNNNNNNGG 1 cut(s) 132
AflII CTTAAG 3 cut(s) 539, 974, 1439
AjiI CACGTC 2 cut(s) 1162, 1179
AloI GAACNNNNNNTCC 2 cut(s) 208, 240
AluBI AGCT 7 cut(s) 104, 592, 860, 922, 1151, 1447, 1460
AluI AGCT 7 cut(s) 104, 592, 860, 922, 1151, 1447, 1460
Alw26I GTCTC 2 cut(s) 405, 1352
AlwI GGATC 3 cut(s) 185, 385, 1377
AlwNI CAGNNNCTG 1 cut(s) 662
ApeKI GCWGC 2 cut(s) 104, 990
ApoI RAATTY 4 cut(s) 296, 634, 710, 727
Asp700I GAANNNNTTC 3 cut(s) 223, 296, 1427
AspS9I GGNCC 1 cut(s) 1477
AsuHPI GGTGA 4 cut(s) 530, 1222, 1261, 1289
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 1477
BanI GGYRCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 1105
BbvI GCAGC 2 cut(s) 91, 977
BccI CCATC 8 cut(s) 20, 32, 126, 488, 558, 562, 1053, 1166
BceAI ACGGC 1 cut(s) 978
BciVI GTATCC 3 cut(s) 339, 565, 802
BcoDI GTCTC 2 cut(s) 405, 1352
BfaI CTAG 5 cut(s) 33, 788, 861, 1355, 1452
BfmI CTRYAG 1 cut(s) 386
BfrI CTTAAG 3 cut(s) 539, 974, 1439
BfuAI ACCTGC 1 cut(s) 1330
BfuI GTATCC 3 cut(s) 339, 565, 802
BglII AGATCT 1 cut(s) 447
BisI GCNGC 2 cut(s) 105, 991
BlsI GCNGC 2 cut(s) 106, 992
BmcAI AGTACT 1 cut(s) 803
Bme18I GGWCC 1 cut(s) 1477
BmgBI CACGTC 2 cut(s) 1162, 1179
BmgT120I GGNCC 1 cut(s) 1477
BmiI GGNNCC 2 cut(s) 415, 499
BmsI GCATC 3 cut(s) 525, 1135, 1216
BpiI GAAGAC 1 cut(s) 1105
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 1065
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 2 cut(s) 683, 1067
BsaBI GATNNNNATC 2 cut(s) 381, 1063
BsaWI WCCGGW 1 cut(s) 1246
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 1 cut(s) 1048
Bse3DI GCAATG 2 cut(s) 69, 946
Bse8I GATNNNNATC 2 cut(s) 381, 1063
BseGI GGATG 4 cut(s) 499, 1064, 1177, 1414
BseJI GATNNNNATC 2 cut(s) 381, 1063
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 2 cut(s) 69, 946
BseNI ACTGG 1 cut(s) 1048
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 91, 977
Bsh1236I CGCG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 759
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 759
BsiSI CCGG 3 cut(s) 1007, 1247, 1367
BslFI GGGAC 2 cut(s) 1172, 1189
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 405, 1352
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 2 cut(s) 1172, 1189
BsmI GAATGC 2 cut(s) 286, 1128
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
BspACI CCGC 6 cut(s) 48, 272, 405, 818, 1155, 1325
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 415, 499
BspMI ACCTGC 1 cut(s) 1330
BspPI GGATC 3 cut(s) 185, 385, 1377
BspQI GCTCTTC 1 cut(s) 1141
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 497
BspTI CTTAAG 3 cut(s) 539, 974, 1439
BsrDI GCAATG 2 cut(s) 69, 946
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 1 cut(s) 1048
BssAI RCCGGY 1 cut(s) 1006
BssMI GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
Bst4CI ACNGT 2 cut(s) 118, 486
Bst6I CTCTTC 3 cut(s) 204, 534, 1141
BstAFI CTTAAG 3 cut(s) 539, 974, 1439
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 147, 270, 1153
BstDEI CTNAG 1 cut(s) 796
BstF5I GGATG 4 cut(s) 499, 1064, 1177, 1414
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 6 cut(s) 193, 385, 393, 450, 759, 1372
BstMAI GTCTC 2 cut(s) 405, 1352
BstMBI GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
BstMCI CGRYCG 1 cut(s) 759
BstMWI GCNNNNNNNGC 2 cut(s) 269, 1345
BstNSI RCATGY 1 cut(s) 1186
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 91, 977
BstV2I GAAGAC 1 cut(s) 1105
BstX2I RGATCY 3 cut(s) 390, 447, 1369
BstYI RGATCY 3 cut(s) 390, 447, 1369
BsuI GTATCC 3 cut(s) 339, 565, 802
BtrI CACGTC 2 cut(s) 1162, 1179
BtsCI GGATG 4 cut(s) 499, 1064, 1177, 1414
BveI ACCTGC 1 cut(s) 1330
Cac8I GCNNGC 3 cut(s) 147, 270, 1153
CaiI CAGNNNCTG 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 1 cut(s) 1477
CseI GACGC 1 cut(s) 68
Csp6I GTAC 4 cut(s) 802, 980, 1049, 1390
CviAII CATG 2 cut(s) 928, 1183
CviQI GTAC 4 cut(s) 802, 980, 1049, 1390
DdeI CTNAG 1 cut(s) 796
DpnI GATC 6 cut(s) 192, 384, 392, 449, 758, 1371
DpnII GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
DraI TTTAAA 1 cut(s) 751
Eam1104I CTCTTC 3 cut(s) 204, 534, 1141
EarI CTCTTC 3 cut(s) 204, 534, 1141
Eco47I GGWCC 1 cut(s) 1477
Eco57I CTGAAG 4 cut(s) 426, 639, 984, 1446
EcoT22I ATGCAT 1 cut(s) 1128
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 2 cut(s) 931, 1186
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FaqI GGGAC 2 cut(s) 1172, 1189
FatI CATG 2 cut(s) 927, 1182
FauI CCCGC 2 cut(s) 1148, 1318
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 2 cut(s) 105, 991
FokI GGATG 4 cut(s) 506, 1071, 1184, 1421
Fsp4HI GCNGC 2 cut(s) 105, 991
FspBI CTAG 5 cut(s) 33, 788, 861, 1355, 1452
GluI GCNGC 2 cut(s) 105, 991
GsuI CTGGAG 1 cut(s) 1065
HapII CCGG 3 cut(s) 1007, 1247, 1367
HgaI GACGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 931, 1186
HindIII AAGCTT 3 cut(s) 590, 920, 1445
HinfI GANTC 6 cut(s) 42, 176, 544, 650, 845, 949
HpaII CCGG 3 cut(s) 1007, 1247, 1367
HphI GGTGA 4 cut(s) 530, 1222, 1261, 1289
Hpy166II GTNNAC 4 cut(s) 53, 793, 1165, 1280
Hpy188I TCNGA 7 cut(s) 229, 445, 534, 658, 692, 1332, 1492
Hpy8I GTNNAC 4 cut(s) 53, 793, 1165, 1280
HpyAV CCTTC 9 cut(s) 190, 308, 405, 450, 509, 730, 1210, 1246, 1417
HpyCH4III ACNGT 2 cut(s) 118, 486
HpyCH4IV ACGT 6 cut(s) 287, 303, 364, 504, 1161, 1178
HpyCH4V TGCA 5 cut(s) 268, 939, 1126, 1182, 1188
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 1345
HpyF3I CTNAG 1 cut(s) 796
HpySE526I ACGT 6 cut(s) 287, 303, 364, 504, 1161, 1178
Hsp92II CATG 2 cut(s) 931, 1186
Kzo9I GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
LguI GCTCTTC 1 cut(s) 1141
Lsp1109I GCAGC 2 cut(s) 91, 977
LweI GCATC 3 cut(s) 525, 1135, 1216
MaeI CTAG 5 cut(s) 33, 788, 861, 1355, 1452
MaeII ACGT 6 cut(s) 287, 303, 364, 504, 1161, 1178
MaeIII GTNAC 5 cut(s) 71, 582, 605, 913, 943
MalI GATC 6 cut(s) 192, 384, 392, 449, 758, 1371
MboI GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 3 cut(s) 390, 447, 1369
MluCI AATT 9 cut(s) 296, 620, 634, 710, 727, 813, 1023, 1087, 1349
MlyI GAGTC 2 cut(s) 538, 839
MmeI TCCRAC 2 cut(s) 116, 441
Mph1103I ATGCAT 1 cut(s) 1128
MroXI GAANNNNTTC 3 cut(s) 223, 296, 1427
MspA1I CMGCKG 1 cut(s) 48
MspCI CTTAAG 3 cut(s) 539, 974, 1439
MspI CCGG 3 cut(s) 1007, 1247, 1367
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 2 cut(s) 286, 1128
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 269, 1345
NdeII GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
NlaIII CATG 2 cut(s) 931, 1186
NlaIV GGNNCC 2 cut(s) 415, 499
NmuCI GTSAC 3 cut(s) 71, 605, 943
NsiI ATGCAT 1 cut(s) 1128
NspI RCATGY 1 cut(s) 1186
NspV TTCGAA 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 1141
PctI GAATGC 2 cut(s) 286, 1128
PdmI GAANNNNTTC 3 cut(s) 223, 296, 1427
PfeI GAWTC 4 cut(s) 42, 176, 650, 949
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 2 cut(s) 106, 992
Ple19I CGATCG 1 cut(s) 759
PleI GAGTC 2 cut(s) 538, 839
PpsI GAGTC 2 cut(s) 538, 839
Psp1406I AACGTT 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 415, 499
PspPI GGNCC 1 cut(s) 1477
PsrI GAACNNNNNNTAC 2 cut(s) 284, 316
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 3 cut(s) 390, 447, 1369
PvuI CGATCG 1 cut(s) 759
RsaI GTAC 4 cut(s) 803, 981, 1050, 1391
RsaNI GTAC 4 cut(s) 802, 980, 1049, 1390
SapI GCTCTTC 1 cut(s) 1141
SatI GCNGC 2 cut(s) 105, 991
Sau3AI GATC 6 cut(s) 190, 382, 390, 447, 756, 1369
Sau96I GGNCC 1 cut(s) 1477
ScaI AGTACT 1 cut(s) 803
SchI GAGTC 2 cut(s) 538, 839
SfaNI GCATC 3 cut(s) 525, 1135, 1216
SfcI CTRYAG 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 1477
SmlI CTYRAG 5 cut(s) 539, 698, 974, 1082, 1439
SmoI CTYRAG 5 cut(s) 539, 698, 974, 1082, 1439
Sse9I AATT 9 cut(s) 296, 620, 634, 710, 727, 813, 1023, 1087, 1349
SsiI CCGC 6 cut(s) 48, 272, 405, 818, 1155, 1325
SspMI CTAG 5 cut(s) 33, 788, 861, 1355, 1452
TaaI ACNGT 2 cut(s) 118, 486
TaiI ACGT 6 cut(s) 290, 306, 367, 507, 1164, 1181
TaqI TCGA 7 cut(s) 8, 189, 196, 422, 615, 1014, 1116
TasI AATT 9 cut(s) 296, 620, 634, 710, 727, 813, 1023, 1087, 1349
TatI WGTACW 3 cut(s) 801, 1048, 1389
TfiI GAWTC 4 cut(s) 42, 176, 650, 949
TseFI GTSAC 3 cut(s) 71, 605, 943
TseI GCWGC 2 cut(s) 104, 990
Tsp45I GTSAC 3 cut(s) 71, 605, 943
TspDTI ATGAA 7 cut(s) 189, 647, 749, 843, 916, 1425, 1436
TspGWI ACGGA 2 cut(s) 173, 1508
Van91I CCANNNNNTGG 1 cut(s) 132
Vha464I CTTAAG 3 cut(s) 539, 974, 1439
VpaK11BI GGWCC 1 cut(s) 1477
XapI RAATTY 4 cut(s) 296, 634, 710, 727
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 1186
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 792
XmnI GAANNNNTTC 3 cut(s) 223, 296, 1427
XspI CTAG 5 cut(s) 33, 788, 861, 1355, 1452
ZrmI AGTACT 1 cut(s) 803
Zsp2I ATGCAT 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.