AT4G14096
ERF Family

BEST Arabidopsis thaliana protein match is F-box RNI-like superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000813
Physical Location & Seq
Forward (+)
8124046 .. 8126535
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14096.2

Sequence Viewer

Length: 1407 bp
ATGGATCTTAGTGGTTGTAGAGATATAATCAGTAGTTTACCAGAAGCCATTAGTTGCCATATCCTATCCTTCCTTCCCACTAAAGAAGCTGCTTCCACTTCGGTTCTTTCGAAAAAATGGCGGTATCTCTTTGCTTTTGTCCCTAATCTTGATTTAGATGAATCTGTTTATCTGAATCCTGAGAATGAGACGGAAGTTTCTTCAAGTTTTATGGATTTTGTGGATAGAGTGTTGGCATTGCAAGGCAATTCTCCATTACATAAGTTCTCTCTAAAGATCGGAGATGGCGTTGAACCAGACCGTATCATTCCTTGGATAAATAATGTGTTGGAACGCGGTGTATCCGATCTTGATCTACACGTGTATATGGAAACGGAATTTGTGTTTCCTTCAGAGATGTTCTTGAGCAAGACACTGGTTAGGCTGAAGCTAATGCTATATCCTCTCTTGGAATTTGAAGATGTTTATCTCCCGAAGCTTAAGACGCTTTATATTGACTCATGCTATTTTGAAAAGTATGGTATTGGGCTTACCAAGCTTCTTTCTGGTTGTCCCATACTTGAGGATTTAGTTCTTGATGATATACCTTGGTGCACTTGGGATTTTGCCTCGGTGTCTGTCCCAACTCTCAAGAGACTAACGTTTAGCACGCAAGTGCGAGATGAGTTTCCAAAGAGTGTGTCTATTGATACTCCGAATCTTGTCTACTTGAAGTTTACTGACACTGTTGCAGGCAAGTATCCGAAAGTGAATTTCGATTCGCTTGTTGAAGCTCATATCGATCTTAGATTGTTACAGGGCCATCAAGGTTATGGTGAAAATGATATGGTTGGCAATGCAACAGATTTTATAATGCGTATATGCAATGTGAAGACTCTCTATCTATCTTCCAACACTCTTCAGGTACTTACTTACAGTTGTGATGCTATACCAATATTCAACAACCTGACTCATTTAACCATCGAGAGTAATCCCGAAGTAGGATGGCAGTCATTGCCAGGTTTGCTCAAGAATTCTCCAAATCTTGAAACTCTTATCTTCCAAGGCCTCATCCACAAAGCCACCGATAAATGTGGAGACGTGTGCTTGTGCAAACCTCGTGAGGAGATTCGCAGTTGCTTAGCATCAAGTCCGGTGAAGGTTATAAAGATACTGAAATTTGGTGAAATCAGTGATGACATGGAGAAGCAGAGAGAGCAGATCAAGTATTTCTTGGAGACAATGCCGAATCTTGAGAAGATGATTTTGTACTACAATACAACAAGTGTTGAAGATGTAACTGAAGTTTCAAGCCGGCTTCAGAGGCTAGTTTCTAAATTAGCTTCATCGACGTGCATTGTCCAACTAATCTCTGATAACCTCAGCTTGTCATCTACTGTATCGACAAATGGGCTCCTCTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

468

Amino Acids

52.87

Weight (kDa)

4.95

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 44 1.2e-07 F-box domain
LRR_At5g56370 PF24758 105 - 242 7.6e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 851, 1145
AccI GTMKAC 1 cut(s) 705
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 121, 336
AclI AACGTT 1 cut(s) 641
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 5 cut(s) 377, 452, 751, 1012, 1157
AcuI CTGAAG 5 cut(s) 375, 446, 884, 1283, 1302
AcvI CACGTG 1 cut(s) 361
AfaI GTAC 2 cut(s) 906, 1250
AfiI CCNNNNNNNGG 1 cut(s) 980
AflII CTTAAG 1 cut(s) 479
AflIII ACRYGT 3 cut(s) 358, 360, 1080
AjiI CACGTC 2 cut(s) 1081, 1332
AjnI CCWGG 1 cut(s) 997
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 7 cut(s) 89, 430, 478, 538, 773, 1322, 1365
AluI AGCT 7 cut(s) 89, 430, 478, 538, 773, 1322, 1365
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 4 cut(s) 182, 628, 1071, 1211
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 799, 1045
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 5 cut(s) 377, 452, 751, 1012, 1157
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AspS9I GGNCC 1 cut(s) 799
AsuHPI GGTGA 3 cut(s) 827, 1147, 1175
AsuII TTCGAA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 596
BanII GRGCYC 1 cut(s) 1395
BauI CACGAG 1 cut(s) 1098
BbrPI CACGTG 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 1361
BbvI GCAGC 1 cut(s) 76
BccI CCATC 4 cut(s) 278, 810, 968, 978
BciT130I CCWGG 1 cut(s) 999
BciVI GTATCC 2 cut(s) 352, 750
BcoDI GTCTC 4 cut(s) 182, 628, 1071, 1211
BfaI CTAG 1 cut(s) 1307
BfrI CTTAAG 1 cut(s) 479
BfuI GTATCC 2 cut(s) 352, 750
BisI GCNGC 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 1120
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 999
BmgBI CACGTC 2 cut(s) 1081, 1332
BmgT120I GGNCC 1 cut(s) 799
BmiI GGNNCC 1 cut(s) 1394
BmrFI CCNGG 1 cut(s) 999
BmsI GCATC 2 cut(s) 913, 1133
BpiI GAAGAC 1 cut(s) 878
Bpu10I CCTNAGC 1 cut(s) 1361
Bpu1102I GCTNAGC 1 cut(s) 1120
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 5 cut(s) 424, 581, 614, 992, 1253
Bsa29I ATCGAT 1 cut(s) 780
BsaAI YACGTR 1 cut(s) 361
BsaBI GATNNNNATC 2 cut(s) 351, 465
BsaJI CCNNGG 4 cut(s) 311, 587, 609, 1042
BsaWI WCCGGW 1 cut(s) 1132
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 980
Bse118I RCCGGY 1 cut(s) 1293
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 4 cut(s) 236, 841, 871, 992
Bse8I GATNNNNATC 2 cut(s) 351, 465
BseBI CCWGG 1 cut(s) 999
BseCI ATCGAT 1 cut(s) 780
BseDI CCNNGG 4 cut(s) 311, 587, 609, 1042
BseGI GGATG 2 cut(s) 989, 1050
BseJI GATNNNNATC 2 cut(s) 351, 465
BseLI CCNNNNNNNGG 1 cut(s) 980
BseMI GCAATG 4 cut(s) 236, 841, 871, 992
BseMII CTCAG 2 cut(s) 171, 1375
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 1118, 1385
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 801, 1047
BshVI ATCGAT 1 cut(s) 780
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 2 cut(s) 1133, 1294
BslFI GGGAC 3 cut(s) 125, 537, 605
BslI CCNNNNNNNGG 1 cut(s) 980
BsmAI GTCTC 4 cut(s) 182, 628, 1071, 1211
BsmBI CGTCTC 2 cut(s) 182, 1071
BsmFI GGGAC 3 cut(s) 125, 537, 605
BsnI GGCC 2 cut(s) 801, 1047
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 596, 1395
Bsp143I GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
Bsp1720I GCTNAGC 1 cut(s) 1120
BspACI CCGC 2 cut(s) 121, 336
BspANI GGCC 2 cut(s) 801, 1047
BspCNI CTCAG 2 cut(s) 172, 1374
BspDI ATCGAT 1 cut(s) 780
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 1394
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 4 cut(s) 236, 841, 871, 992
BsrFI RCCGGY 1 cut(s) 1293
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 1293
BssECI CCNNGG 4 cut(s) 311, 587, 609, 1042
BssMI GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
BssSI CACGAG 1 cut(s) 1098
BssT1I CCWWGG 3 cut(s) 311, 587, 1042
Bst2BI CACGAG 1 cut(s) 1098
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 4 cut(s) 302, 727, 917, 1378
Bst6I CTCTTC 1 cut(s) 903
BstAFI CTTAAG 1 cut(s) 479
BstAPI GCANNNNNTGC 1 cut(s) 994
BstBAI YACGTR 1 cut(s) 361
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 650, 733, 1295
BstDEI CTNAG 5 cut(s) 8, 180, 785, 1120, 1361
BstF5I GGATG 2 cut(s) 989, 1050
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 6 cut(s) 7, 279, 349, 355, 784, 1203
BstMAI GTCTC 4 cut(s) 182, 628, 1071, 1211
BstMBI GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
BstMWI GCNNNNNNNGC 6 cut(s) 484, 535, 994, 1003, 1195, 1303
BstNI CCWGG 1 cut(s) 999
BstSCI CCNGG 1 cut(s) 997
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 878
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 780
BsuI GTATCC 2 cut(s) 352, 750
BsuRI GGCC 2 cut(s) 801, 1047
BsuTUI ATCGAT 1 cut(s) 780
BtrI CACGTC 2 cut(s) 1081, 1332
BtsCI GGATG 2 cut(s) 989, 1050
BtsIMutI CAGTG 3 cut(s) 413, 723, 1177
Cac8I GCNNGC 3 cut(s) 650, 733, 1295
Cfr10I RCCGGY 1 cut(s) 1293
Cfr13I GGNCC 1 cut(s) 799
ClaI ATCGAT 1 cut(s) 780
CseI GACGC 1 cut(s) 493
Csp6I GTAC 2 cut(s) 905, 1249
CviAII CATG 2 cut(s) 501, 1180
CviQI GTAC 2 cut(s) 905, 1249
DdeI CTNAG 5 cut(s) 8, 180, 785, 1120, 1361
DpnI GATC 6 cut(s) 6, 278, 348, 354, 783, 1202
DpnII GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco130I CCWWGG 3 cut(s) 311, 587, 1042
Eco147I AGGCCT 1 cut(s) 1047
Eco24I GRGCYC 1 cut(s) 1395
Eco57I CTGAAG 5 cut(s) 375, 446, 884, 1283, 1302
Eco72I CACGTG 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 1 cut(s) 997
EcoT14I CCWWGG 3 cut(s) 311, 587, 1042
EcoT38I GRGCYC 1 cut(s) 1395
ErhI CCWWGG 3 cut(s) 311, 587, 1042
Esp3I CGTCTC 2 cut(s) 182, 1071
FaeI CATG 2 cut(s) 504, 1183
FalI AAGNNNNNCTT 2 cut(s) 1196, 1228
FaqI GGGAC 3 cut(s) 125, 537, 605
FatI CATG 2 cut(s) 500, 1179
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 996, 1037
FriOI GRGCYC 1 cut(s) 1395
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 1307
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 801, 1047
HapII CCGG 2 cut(s) 1133, 1294
HgaI GACGC 1 cut(s) 493
Hin1II CATG 2 cut(s) 504, 1183
HindIII AAGCTT 2 cut(s) 476, 536
HinfI GANTC 9 cut(s) 161, 175, 497, 697, 758, 874, 949, 1108, 1228
HpaII CCGG 2 cut(s) 1133, 1294
HphI GGTGA 3 cut(s) 827, 1147, 1175
Hpy166II GTNNAC 4 cut(s) 38, 594, 706, 717
Hpy188I TCNGA 8 cut(s) 174, 281, 346, 394, 696, 744, 1302, 1354
Hpy8I GTNNAC 4 cut(s) 38, 594, 706, 717
Hpy99I CGWCG 1 cut(s) 1333
HpyAV CCTTC 4 cut(s) 79, 83, 399, 1132
HpyCH4III ACNGT 4 cut(s) 302, 727, 917, 1378
HpyCH4IV ACGT 4 cut(s) 360, 641, 1080, 1331
HpyCH4V TGCA 7 cut(s) 241, 594, 731, 839, 864, 1092, 1335
HpyF10VI GCNNNNNNNGC 6 cut(s) 484, 535, 994, 1003, 1195, 1303
HpyF3I CTNAG 5 cut(s) 8, 180, 785, 1120, 1361
HpySE526I ACGT 4 cut(s) 360, 641, 1080, 1331
Hsp92II CATG 2 cut(s) 504, 1183
KroI GCCGGC 1 cut(s) 1293
KroNI GCCGGC 1 cut(s) 1295
Kzo9I GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
LmnI GCTCC 1 cut(s) 1398
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 2 cut(s) 913, 1133
MaeI CTAG 1 cut(s) 1307
MaeII ACGT 4 cut(s) 360, 641, 1080, 1331
MaeIII GTNAC 2 cut(s) 792, 1276
MalI GATC 6 cut(s) 6, 278, 348, 354, 783, 1202
MboI GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
MboII GAAGA 8 cut(s) 192, 470, 879, 883, 890, 1030, 1249, 1283
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 596, 1395
MluCI AATT 7 cut(s) 247, 377, 452, 751, 1012, 1157, 1316
MlyI GAGTC 3 cut(s) 491, 868, 943
MmeI TCCRAC 3 cut(s) 309, 915, 1366
MnlI CCTC 9 cut(s) 453, 556, 619, 1058, 1096, 1107, 1296, 1370, 1406
MroNI GCCGGC 1 cut(s) 1293
MseI TTAA 2 cut(s) 480, 956
MslI CAYNNNNRTG 2 cut(s) 653, 1330
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 2 cut(s) 1133, 1294
MspR9I CCNGG 1 cut(s) 999
MvaI CCWGG 1 cut(s) 999
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 6 cut(s) 484, 535, 994, 1003, 1195, 1303
NaeI GCCGGC 1 cut(s) 1295
NdeII GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
NgoMIV GCCGGC 1 cut(s) 1293
NlaIII CATG 2 cut(s) 504, 1183
NlaIV GGNNCC 1 cut(s) 1394
NspV TTCGAA 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 653
PceI AGGCCT 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 285
PdiI GCCGGC 1 cut(s) 1295
PfeI GAWTC 6 cut(s) 161, 175, 697, 758, 1108, 1228
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 3 cut(s) 491, 868, 943
PmaCI CACGTG 1 cut(s) 361
PmlI CACGTG 1 cut(s) 361
PpsI GAGTC 3 cut(s) 491, 868, 943
Ppu21I YACGTR 1 cut(s) 361
PsiI TTATAA 2 cut(s) 851, 1145
Psp1406I AACGTT 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 997
PspCI CACGTG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 997
PspN4I GGNNCC 1 cut(s) 1394
PspPI GGNCC 1 cut(s) 799
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 906, 1250
RsaNI GTAC 2 cut(s) 905, 1249
RseI CAYNNNNRTG 2 cut(s) 653, 1330
SaqAI TTAA 2 cut(s) 480, 956
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 6 cut(s) 4, 276, 346, 352, 781, 1200
Sau96I GGNCC 1 cut(s) 799
SchI GAGTC 3 cut(s) 491, 868, 943
ScrFI CCNGG 1 cut(s) 999
SduI GDGCHC 2 cut(s) 596, 1395
SfaNI GCATC 2 cut(s) 913, 1133
SfuI TTCGAA 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 653, 1330
SmlI CTYRAG 6 cut(s) 403, 479, 560, 629, 1007, 1232
SmoI CTYRAG 6 cut(s) 403, 479, 560, 629, 1007, 1232
Sse9I AATT 7 cut(s) 247, 377, 452, 751, 1012, 1157, 1316
SseBI AGGCCT 1 cut(s) 1047
SsiI CCGC 2 cut(s) 121, 336
SspI AATATT 1 cut(s) 936
SspMI CTAG 1 cut(s) 1307
StuI AGGCCT 1 cut(s) 1047
StyD4I CCNGG 1 cut(s) 997
StyI CCWWGG 3 cut(s) 311, 587, 1042
TaaI ACNGT 4 cut(s) 302, 727, 917, 1378
TaiI ACGT 4 cut(s) 363, 644, 1083, 1334
TaqI TCGA 6 cut(s) 110, 756, 780, 963, 1328, 1382
TasI AATT 7 cut(s) 247, 377, 452, 751, 1012, 1157, 1316
TatI WGTACW 1 cut(s) 1248
TfiI GAWTC 6 cut(s) 161, 175, 697, 758, 1108, 1228
Tru1I TTAA 2 cut(s) 480, 956
Tru9I TTAA 2 cut(s) 480, 956
TscAI CASTG 3 cut(s) 420, 730, 1177
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 174, 1314
TspGWI ACGGA 2 cut(s) 206, 389
TspRI CASTG 3 cut(s) 420, 730, 1177
Vha464I CTTAAG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 592
XapI RAATTY 5 cut(s) 377, 452, 751, 1012, 1157
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.